Experiment: KB with Ampicillin 0.775 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1315 and Psyr_1316 are separated by 79 nucleotides Psyr_1316 and Psyr_1317 are separated by 59 nucleotides Psyr_1317 and Psyr_1318 are separated by 395 nucleotides
Psyr_1315: Psyr_1315 - lipoprotein, putative, at 1,493,117 to 1,493,437
_1315
Psyr_1316: Psyr_1316 - OmpA/MotB, at 1,493,517 to 1,494,299
_1316
Psyr_1317: Psyr_1317 - conserved hypothetical protein, at 1,494,359 to 1,494,757
_1317
Psyr_1318: Psyr_1318 - Phosphoenolpyruvate carboxylase, at 1,495,153 to 1,497,789
_1318
Position (kb) 1494
1495 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1493.518 kb on + strand at 1493.564 kb on + strand at 1493.565 kb on - strand at 1493.565 kb on - strand at 1493.639 kb on - strand, within Psyr_1316 at 1493.639 kb on - strand, within Psyr_1316 at 1493.639 kb on - strand, within Psyr_1316 at 1493.667 kb on + strand, within Psyr_1316 at 1493.680 kb on - strand, within Psyr_1316 at 1493.680 kb on - strand, within Psyr_1316 at 1493.731 kb on + strand, within Psyr_1316 at 1493.732 kb on - strand, within Psyr_1316 at 1493.732 kb on - strand, within Psyr_1316 at 1493.759 kb on - strand, within Psyr_1316 at 1493.857 kb on + strand, within Psyr_1316 at 1493.857 kb on + strand, within Psyr_1316 at 1493.858 kb on - strand, within Psyr_1316 at 1493.858 kb on - strand, within Psyr_1316 at 1494.061 kb on + strand, within Psyr_1316 at 1494.302 kb on + strand at 1494.303 kb on - strand at 1494.303 kb on - strand at 1494.303 kb on - strand at 1494.315 kb on + strand at 1494.350 kb on - strand at 1494.350 kb on - strand at 1494.510 kb on + strand, within Psyr_1317 at 1494.510 kb on + strand, within Psyr_1317 at 1494.511 kb on - strand, within Psyr_1317 at 1494.511 kb on - strand, within Psyr_1317 at 1494.511 kb on - strand, within Psyr_1317 at 1494.511 kb on - strand, within Psyr_1317 at 1494.677 kb on - strand, within Psyr_1317 at 1494.833 kb on + strand at 1494.833 kb on + strand at 1494.866 kb on - strand at 1494.866 kb on - strand at 1494.872 kb on + strand at 1494.901 kb on + strand at 1494.901 kb on + strand at 1494.910 kb on + strand at 1494.914 kb on + strand at 1494.914 kb on + strand at 1494.914 kb on + strand at 1494.915 kb on - strand at 1494.915 kb on - strand at 1494.915 kb on - strand at 1494.915 kb on - strand at 1494.918 kb on + strand at 1494.963 kb on + strand at 1494.963 kb on + strand at 1494.964 kb on - strand at 1494.977 kb on + strand at 1494.977 kb on + strand at 1494.977 kb on + strand at 1494.977 kb on + strand at 1494.977 kb on + strand at 1494.978 kb on - strand at 1494.978 kb on - strand at 1494.978 kb on - strand at 1495.093 kb on + strand at 1495.216 kb on - strand at 1495.470 kb on - strand, within Psyr_1318 at 1495.609 kb on + strand, within Psyr_1318 at 1495.610 kb on - strand, within Psyr_1318 at 1495.659 kb on + strand, within Psyr_1318 at 1495.659 kb on + strand, within Psyr_1318 at 1495.680 kb on + strand, within Psyr_1318 at 1495.680 kb on + strand, within Psyr_1318 at 1495.680 kb on + strand, within Psyr_1318 at 1495.680 kb on + strand, within Psyr_1318 at 1495.681 kb on - strand, within Psyr_1318 at 1495.681 kb on - strand, within Psyr_1318 at 1495.681 kb on - strand, within Psyr_1318
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ampicillin 0.775 ug/ml remove 1,493,518 + +0.9 1,493,564 + +1.0 1,493,565 - +0.0 1,493,565 - +0.2 1,493,639 - Psyr_1316 0.16 -0.1 1,493,639 - Psyr_1316 0.16 -0.8 1,493,639 - Psyr_1316 0.16 +0.6 1,493,667 + Psyr_1316 0.19 +0.9 1,493,680 - Psyr_1316 0.21 -0.8 1,493,680 - Psyr_1316 0.21 +0.0 1,493,731 + Psyr_1316 0.27 +0.4 1,493,732 - Psyr_1316 0.27 +0.3 1,493,732 - Psyr_1316 0.27 +0.3 1,493,759 - Psyr_1316 0.31 -0.1 1,493,857 + Psyr_1316 0.43 +0.4 1,493,857 + Psyr_1316 0.43 +0.4 1,493,858 - Psyr_1316 0.44 +0.5 1,493,858 - Psyr_1316 0.44 -0.4 1,494,061 + Psyr_1316 0.69 -0.1 1,494,302 + +0.8 1,494,303 - +0.4 1,494,303 - +0.1 1,494,303 - +0.1 1,494,315 + -0.5 1,494,350 - +0.9 1,494,350 - -1.0 1,494,510 + Psyr_1317 0.38 +1.9 1,494,510 + Psyr_1317 0.38 -1.0 1,494,511 - Psyr_1317 0.38 -0.4 1,494,511 - Psyr_1317 0.38 -1.6 1,494,511 - Psyr_1317 0.38 +0.1 1,494,511 - Psyr_1317 0.38 -0.4 1,494,677 - Psyr_1317 0.80 -0.3 1,494,833 + +0.2 1,494,833 + -1.0 1,494,866 - +0.2 1,494,866 - +0.6 1,494,872 + -0.2 1,494,901 + -0.4 1,494,901 + -0.8 1,494,910 + +1.2 1,494,914 + +0.5 1,494,914 + +1.5 1,494,914 + -0.2 1,494,915 - +0.7 1,494,915 - +0.6 1,494,915 - +0.2 1,494,915 - -0.1 1,494,918 + +0.6 1,494,963 + -0.0 1,494,963 + -0.0 1,494,964 - +0.7 1,494,977 + -2.0 1,494,977 + +0.1 1,494,977 + +0.0 1,494,977 + +0.4 1,494,977 + -0.5 1,494,978 - -2.3 1,494,978 - -0.1 1,494,978 - +1.3 1,495,093 + -2.1 1,495,216 - +1.4 1,495,470 - Psyr_1318 0.12 +1.1 1,495,609 + Psyr_1318 0.17 +0.4 1,495,610 - Psyr_1318 0.17 +0.6 1,495,659 + Psyr_1318 0.19 -0.6 1,495,659 + Psyr_1318 0.19 +0.1 1,495,680 + Psyr_1318 0.20 +1.2 1,495,680 + Psyr_1318 0.20 -1.1 1,495,680 + Psyr_1318 0.20 +0.9 1,495,680 + Psyr_1318 0.20 -1.6 1,495,681 - Psyr_1318 0.20 -0.7 1,495,681 - Psyr_1318 0.20 +0.0 1,495,681 - Psyr_1318 0.20 -0.3
Or see this region's nucleotide sequence