Experiment: KB with Ampicillin 0.775 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1253 and Psyr_1254 overlap by 13 nucleotides Psyr_1254 and Psyr_1255 are separated by 110 nucleotides Psyr_1255 and Psyr_1256 are separated by 69 nucleotides
Psyr_1253: Psyr_1253 - 2-keto-4-methylthiobutyrate aminotransferase apoenzyme, at 1,409,314 to 1,410,462
_1253
Psyr_1254: Psyr_1254 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase, at 1,410,450 to 1,411,241
_1254
Psyr_1255: Psyr_1255 - conserved hypothetical protein, at 1,411,352 to 1,411,789
_1255
Psyr_1256: Psyr_1256 - carboxyphosphonoenolpyruvate phosphonomutase, at 1,411,859 to 1,412,728
_1256
Position (kb) 1411
1412 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1410.365 kb on - strand at 1410.449 kb on + strand at 1410.449 kb on + strand at 1410.450 kb on - strand at 1410.450 kb on - strand at 1410.460 kb on + strand at 1410.461 kb on - strand at 1410.461 kb on - strand at 1410.461 kb on - strand at 1410.653 kb on + strand, within Psyr_1254 at 1410.653 kb on + strand, within Psyr_1254 at 1410.654 kb on - strand, within Psyr_1254 at 1410.654 kb on - strand, within Psyr_1254 at 1410.654 kb on - strand, within Psyr_1254 at 1410.654 kb on - strand, within Psyr_1254 at 1410.654 kb on - strand, within Psyr_1254 at 1410.661 kb on + strand, within Psyr_1254 at 1410.662 kb on - strand, within Psyr_1254 at 1410.687 kb on - strand, within Psyr_1254 at 1410.687 kb on - strand, within Psyr_1254 at 1410.687 kb on - strand, within Psyr_1254 at 1410.786 kb on + strand, within Psyr_1254 at 1410.831 kb on + strand, within Psyr_1254 at 1410.831 kb on + strand, within Psyr_1254 at 1410.831 kb on + strand, within Psyr_1254 at 1410.832 kb on - strand, within Psyr_1254 at 1410.880 kb on + strand, within Psyr_1254 at 1410.880 kb on + strand, within Psyr_1254 at 1410.898 kb on - strand, within Psyr_1254 at 1410.954 kb on + strand, within Psyr_1254 at 1410.954 kb on + strand, within Psyr_1254 at 1410.954 kb on + strand, within Psyr_1254 at 1410.955 kb on - strand, within Psyr_1254 at 1410.955 kb on - strand, within Psyr_1254 at 1410.955 kb on - strand, within Psyr_1254 at 1411.032 kb on + strand, within Psyr_1254 at 1411.032 kb on + strand, within Psyr_1254 at 1411.032 kb on + strand, within Psyr_1254 at 1411.032 kb on + strand, within Psyr_1254 at 1411.032 kb on + strand, within Psyr_1254 at 1411.032 kb on + strand, within Psyr_1254 at 1411.032 kb on + strand, within Psyr_1254 at 1411.032 kb on + strand, within Psyr_1254 at 1411.032 kb on + strand, within Psyr_1254 at 1411.032 kb on + strand, within Psyr_1254 at 1411.032 kb on + strand, within Psyr_1254 at 1411.032 kb on + strand, within Psyr_1254 at 1411.032 kb on + strand, within Psyr_1254 at 1411.032 kb on + strand, within Psyr_1254 at 1411.033 kb on - strand, within Psyr_1254 at 1411.033 kb on - strand, within Psyr_1254 at 1411.033 kb on - strand, within Psyr_1254 at 1411.033 kb on - strand, within Psyr_1254 at 1411.033 kb on - strand, within Psyr_1254 at 1411.033 kb on - strand, within Psyr_1254 at 1411.033 kb on - strand, within Psyr_1254 at 1411.033 kb on - strand, within Psyr_1254 at 1411.033 kb on - strand, within Psyr_1254 at 1411.080 kb on + strand, within Psyr_1254 at 1411.080 kb on + strand, within Psyr_1254 at 1411.081 kb on - strand, within Psyr_1254 at 1411.189 kb on - strand at 1411.229 kb on + strand at 1411.229 kb on + strand at 1411.229 kb on + strand at 1411.230 kb on - strand at 1411.239 kb on + strand at 1411.307 kb on - strand at 1411.307 kb on - strand at 1411.315 kb on + strand at 1411.315 kb on + strand at 1411.315 kb on + strand at 1411.315 kb on + strand at 1411.315 kb on + strand at 1411.315 kb on + strand at 1411.315 kb on + strand at 1411.315 kb on + strand at 1411.315 kb on + strand at 1411.315 kb on + strand at 1411.315 kb on + strand at 1411.316 kb on - strand at 1411.316 kb on - strand at 1411.316 kb on - strand at 1411.316 kb on - strand at 1411.316 kb on - strand at 1411.316 kb on - strand at 1411.316 kb on - strand at 1411.316 kb on - strand at 1411.316 kb on - strand at 1411.316 kb on - strand at 1411.316 kb on - strand at 1411.334 kb on + strand at 1411.335 kb on - strand at 1411.536 kb on + strand, within Psyr_1255 at 1411.537 kb on - strand, within Psyr_1255 at 1411.537 kb on - strand, within Psyr_1255 at 1411.662 kb on + strand, within Psyr_1255 at 1411.895 kb on + strand at 1411.895 kb on + strand at 1411.895 kb on + strand at 1411.895 kb on + strand at 1411.895 kb on + strand at 1411.895 kb on + strand at 1411.895 kb on + strand at 1411.895 kb on + strand at 1411.895 kb on + strand at 1411.896 kb on - strand at 1411.896 kb on - strand at 1411.896 kb on - strand at 1411.896 kb on - strand at 1411.899 kb on + strand at 1411.899 kb on + strand at 1411.899 kb on + strand at 1411.899 kb on + strand at 1411.900 kb on - strand at 1411.900 kb on - strand at 1411.900 kb on - strand at 1411.915 kb on + strand at 1411.915 kb on + strand at 1411.915 kb on + strand at 1411.915 kb on + strand at 1411.916 kb on - strand at 1411.917 kb on + strand at 1411.917 kb on + strand at 1411.917 kb on + strand at 1411.917 kb on + strand at 1411.917 kb on + strand at 1411.917 kb on + strand at 1411.917 kb on + strand at 1411.917 kb on + strand at 1411.917 kb on + strand at 1411.918 kb on - strand at 1411.918 kb on - strand at 1411.918 kb on - strand at 1411.918 kb on - strand at 1411.918 kb on - strand at 1411.918 kb on - strand at 1411.918 kb on - strand at 1411.992 kb on + strand, within Psyr_1256 at 1411.992 kb on + strand, within Psyr_1256 at 1411.992 kb on + strand, within Psyr_1256 at 1411.992 kb on + strand, within Psyr_1256 at 1411.993 kb on - strand, within Psyr_1256 at 1411.993 kb on - strand, within Psyr_1256 at 1412.016 kb on + strand, within Psyr_1256 at 1412.016 kb on + strand, within Psyr_1256 at 1412.017 kb on - strand, within Psyr_1256 at 1412.033 kb on + strand, within Psyr_1256 at 1412.033 kb on + strand, within Psyr_1256 at 1412.033 kb on + strand, within Psyr_1256 at 1412.034 kb on - strand, within Psyr_1256 at 1412.034 kb on - strand, within Psyr_1256 at 1412.034 kb on - strand, within Psyr_1256 at 1412.375 kb on - strand, within Psyr_1256 at 1412.375 kb on - strand, within Psyr_1256 at 1412.437 kb on + strand, within Psyr_1256 at 1412.597 kb on + strand, within Psyr_1256 at 1412.597 kb on + strand, within Psyr_1256 at 1412.598 kb on - strand, within Psyr_1256 at 1412.598 kb on - strand, within Psyr_1256 at 1412.598 kb on - strand, within Psyr_1256 at 1412.762 kb on + strand at 1412.777 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ampicillin 0.775 ug/ml remove 1,410,365 - +0.0 1,410,449 + -0.0 1,410,449 + +0.3 1,410,450 - +0.7 1,410,450 - -0.6 1,410,460 + +1.0 1,410,461 - -0.0 1,410,461 - +0.1 1,410,461 - +0.2 1,410,653 + Psyr_1254 0.26 -0.1 1,410,653 + Psyr_1254 0.26 -0.2 1,410,654 - Psyr_1254 0.26 -0.0 1,410,654 - Psyr_1254 0.26 +0.4 1,410,654 - Psyr_1254 0.26 +0.4 1,410,654 - Psyr_1254 0.26 -0.6 1,410,654 - Psyr_1254 0.26 +0.6 1,410,661 + Psyr_1254 0.27 +0.2 1,410,662 - Psyr_1254 0.27 -1.8 1,410,687 - Psyr_1254 0.30 -1.1 1,410,687 - Psyr_1254 0.30 -0.0 1,410,687 - Psyr_1254 0.30 +0.2 1,410,786 + Psyr_1254 0.42 +0.2 1,410,831 + Psyr_1254 0.48 +0.6 1,410,831 + Psyr_1254 0.48 -0.5 1,410,831 + Psyr_1254 0.48 -1.3 1,410,832 - Psyr_1254 0.48 -1.3 1,410,880 + Psyr_1254 0.54 +1.1 1,410,880 + Psyr_1254 0.54 -0.7 1,410,898 - Psyr_1254 0.57 -0.1 1,410,954 + Psyr_1254 0.64 +0.1 1,410,954 + Psyr_1254 0.64 -2.3 1,410,954 + Psyr_1254 0.64 -0.8 1,410,955 - Psyr_1254 0.64 -0.1 1,410,955 - Psyr_1254 0.64 -0.6 1,410,955 - Psyr_1254 0.64 -1.5 1,411,032 + Psyr_1254 0.73 -1.0 1,411,032 + Psyr_1254 0.73 +1.3 1,411,032 + Psyr_1254 0.73 -0.5 1,411,032 + Psyr_1254 0.73 +0.2 1,411,032 + Psyr_1254 0.73 -0.1 1,411,032 + Psyr_1254 0.73 +0.5 1,411,032 + Psyr_1254 0.73 +0.3 1,411,032 + Psyr_1254 0.73 +0.3 1,411,032 + Psyr_1254 0.73 +0.1 1,411,032 + Psyr_1254 0.73 +0.4 1,411,032 + Psyr_1254 0.73 -1.9 1,411,032 + Psyr_1254 0.73 -0.6 1,411,032 + Psyr_1254 0.73 +0.9 1,411,032 + Psyr_1254 0.73 -0.1 1,411,033 - Psyr_1254 0.74 -0.1 1,411,033 - Psyr_1254 0.74 +0.9 1,411,033 - Psyr_1254 0.74 -1.7 1,411,033 - Psyr_1254 0.74 -0.1 1,411,033 - Psyr_1254 0.74 +0.4 1,411,033 - Psyr_1254 0.74 -0.1 1,411,033 - Psyr_1254 0.74 +0.5 1,411,033 - Psyr_1254 0.74 -0.5 1,411,033 - Psyr_1254 0.74 -1.0 1,411,080 + Psyr_1254 0.80 +0.7 1,411,080 + Psyr_1254 0.80 +0.4 1,411,081 - Psyr_1254 0.80 +1.4 1,411,189 - +2.3 1,411,229 + +0.3 1,411,229 + +0.6 1,411,229 + -1.1 1,411,230 - -2.7 1,411,239 + +0.3 1,411,307 - +0.2 1,411,307 - +0.6 1,411,315 + +0.6 1,411,315 + -1.0 1,411,315 + +0.2 1,411,315 + -0.4 1,411,315 + -0.0 1,411,315 + +1.3 1,411,315 + +0.3 1,411,315 + +0.5 1,411,315 + -0.2 1,411,315 + -2.1 1,411,315 + +1.0 1,411,316 - -0.3 1,411,316 - +0.5 1,411,316 - +0.9 1,411,316 - -0.1 1,411,316 - -1.5 1,411,316 - -0.8 1,411,316 - -0.4 1,411,316 - -1.7 1,411,316 - -0.8 1,411,316 - -0.7 1,411,316 - -0.3 1,411,334 + -0.1 1,411,335 - +1.4 1,411,536 + Psyr_1255 0.42 -1.2 1,411,537 - Psyr_1255 0.42 -1.9 1,411,537 - Psyr_1255 0.42 -0.1 1,411,662 + Psyr_1255 0.71 +2.3 1,411,895 + -0.7 1,411,895 + -0.4 1,411,895 + -0.5 1,411,895 + -0.1 1,411,895 + +0.4 1,411,895 + +0.2 1,411,895 + +0.4 1,411,895 + -2.8 1,411,895 + +0.0 1,411,896 - +0.4 1,411,896 - +0.0 1,411,896 - +0.0 1,411,896 - +0.1 1,411,899 + +0.9 1,411,899 + +1.2 1,411,899 + -1.5 1,411,899 + +0.7 1,411,900 - +0.6 1,411,900 - +0.9 1,411,900 - +1.2 1,411,915 + -0.6 1,411,915 + +0.5 1,411,915 + -0.1 1,411,915 + +0.7 1,411,916 - -0.1 1,411,917 + +0.1 1,411,917 + -0.5 1,411,917 + +0.9 1,411,917 + -1.5 1,411,917 + -0.1 1,411,917 + +0.9 1,411,917 + +0.6 1,411,917 + +1.3 1,411,917 + +0.3 1,411,918 - +0.2 1,411,918 - +2.6 1,411,918 - +1.3 1,411,918 - -0.6 1,411,918 - -1.5 1,411,918 - +0.3 1,411,918 - +0.4 1,411,992 + Psyr_1256 0.15 -0.8 1,411,992 + Psyr_1256 0.15 -0.5 1,411,992 + Psyr_1256 0.15 +1.3 1,411,992 + Psyr_1256 0.15 +0.0 1,411,993 - Psyr_1256 0.15 +0.9 1,411,993 - Psyr_1256 0.15 -1.5 1,412,016 + Psyr_1256 0.18 +0.2 1,412,016 + Psyr_1256 0.18 -0.1 1,412,017 - Psyr_1256 0.18 +0.6 1,412,033 + Psyr_1256 0.20 -0.1 1,412,033 + Psyr_1256 0.20 -0.4 1,412,033 + Psyr_1256 0.20 -0.7 1,412,034 - Psyr_1256 0.20 +0.2 1,412,034 - Psyr_1256 0.20 -0.1 1,412,034 - Psyr_1256 0.20 -0.3 1,412,375 - Psyr_1256 0.59 -0.3 1,412,375 - Psyr_1256 0.59 -2.0 1,412,437 + Psyr_1256 0.66 -0.1 1,412,597 + Psyr_1256 0.85 +0.1 1,412,597 + Psyr_1256 0.85 +0.1 1,412,598 - Psyr_1256 0.85 -2.3 1,412,598 - Psyr_1256 0.85 -0.1 1,412,598 - Psyr_1256 0.85 -0.1 1,412,762 + +0.5 1,412,777 + -0.6
Or see this region's nucleotide sequence