Experiment: KB with Ampicillin 0.775 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1034 and Psyr_1035 are separated by 61 nucleotides Psyr_1035 and Psyr_1036 are separated by 264 nucleotides Psyr_1036 and Psyr_1037 are separated by 898 nucleotides
Psyr_1034: Psyr_1034 - Phosphate-starvation-inducible E, at 1,168,417 to 1,168,905
_1034
Psyr_1035: Psyr_1035 - lipoprotein, putative, at 1,168,967 to 1,169,299
_1035
Psyr_1036: Psyr_1036 - conserved hypothetical protein, at 1,169,564 to 1,169,896
_1036
Psyr_1037: Psyr_1037 - ribosomal subunit interface protein, putative, at 1,170,795 to 1,171,223
_1037
Position (kb) 1169
1170 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1168.618 kb on + strand, within Psyr_1034 at 1168.618 kb on + strand, within Psyr_1034 at 1168.618 kb on + strand, within Psyr_1034 at 1168.619 kb on - strand, within Psyr_1034 at 1168.619 kb on - strand, within Psyr_1034 at 1168.619 kb on - strand, within Psyr_1034 at 1168.619 kb on - strand, within Psyr_1034 at 1168.619 kb on - strand, within Psyr_1034 at 1168.619 kb on - strand, within Psyr_1034 at 1168.619 kb on - strand, within Psyr_1034 at 1168.619 kb on - strand, within Psyr_1034 at 1168.648 kb on + strand, within Psyr_1034 at 1168.648 kb on + strand, within Psyr_1034 at 1168.649 kb on - strand, within Psyr_1034 at 1168.687 kb on + strand, within Psyr_1034 at 1168.687 kb on + strand, within Psyr_1034 at 1168.687 kb on + strand, within Psyr_1034 at 1168.687 kb on + strand, within Psyr_1034 at 1168.687 kb on + strand, within Psyr_1034 at 1168.687 kb on + strand, within Psyr_1034 at 1168.687 kb on + strand, within Psyr_1034 at 1168.687 kb on + strand, within Psyr_1034 at 1168.687 kb on + strand, within Psyr_1034 at 1168.687 kb on + strand, within Psyr_1034 at 1168.687 kb on + strand, within Psyr_1034 at 1168.688 kb on - strand, within Psyr_1034 at 1168.688 kb on - strand, within Psyr_1034 at 1168.688 kb on - strand, within Psyr_1034 at 1168.688 kb on - strand, within Psyr_1034 at 1168.688 kb on - strand, within Psyr_1034 at 1168.688 kb on - strand, within Psyr_1034 at 1168.688 kb on - strand, within Psyr_1034 at 1168.688 kb on - strand, within Psyr_1034 at 1168.688 kb on - strand, within Psyr_1034 at 1168.765 kb on + strand, within Psyr_1034 at 1168.765 kb on + strand, within Psyr_1034 at 1168.765 kb on + strand, within Psyr_1034 at 1168.766 kb on - strand, within Psyr_1034 at 1168.766 kb on - strand, within Psyr_1034 at 1168.825 kb on + strand, within Psyr_1034 at 1168.825 kb on + strand, within Psyr_1034 at 1168.825 kb on + strand, within Psyr_1034 at 1168.825 kb on + strand, within Psyr_1034 at 1168.825 kb on + strand, within Psyr_1034 at 1168.825 kb on + strand, within Psyr_1034 at 1168.826 kb on - strand, within Psyr_1034 at 1168.832 kb on - strand, within Psyr_1034 at 1168.908 kb on + strand at 1168.908 kb on + strand at 1168.908 kb on + strand at 1168.909 kb on - strand at 1168.952 kb on + strand at 1168.953 kb on - strand at 1168.953 kb on - strand at 1168.954 kb on + strand at 1168.954 kb on + strand at 1168.954 kb on + strand at 1168.954 kb on + strand at 1168.954 kb on + strand at 1168.954 kb on + strand at 1168.955 kb on - strand at 1168.955 kb on - strand at 1168.955 kb on - strand at 1168.955 kb on - strand at 1169.034 kb on + strand, within Psyr_1035 at 1169.034 kb on + strand, within Psyr_1035 at 1169.034 kb on + strand, within Psyr_1035 at 1169.034 kb on + strand, within Psyr_1035 at 1169.034 kb on + strand, within Psyr_1035 at 1169.035 kb on - strand, within Psyr_1035 at 1169.035 kb on - strand, within Psyr_1035 at 1169.035 kb on - strand, within Psyr_1035 at 1169.035 kb on - strand, within Psyr_1035 at 1169.035 kb on - strand, within Psyr_1035 at 1169.035 kb on - strand, within Psyr_1035 at 1169.035 kb on - strand, within Psyr_1035 at 1169.035 kb on - strand, within Psyr_1035 at 1169.035 kb on - strand, within Psyr_1035 at 1169.035 kb on - strand, within Psyr_1035 at 1169.120 kb on + strand, within Psyr_1035 at 1169.120 kb on + strand, within Psyr_1035 at 1169.120 kb on + strand, within Psyr_1035 at 1169.120 kb on + strand, within Psyr_1035 at 1169.121 kb on - strand, within Psyr_1035 at 1169.121 kb on - strand, within Psyr_1035 at 1169.121 kb on - strand, within Psyr_1035 at 1169.121 kb on - strand, within Psyr_1035 at 1169.124 kb on + strand, within Psyr_1035 at 1169.124 kb on + strand, within Psyr_1035 at 1169.124 kb on + strand, within Psyr_1035 at 1169.124 kb on + strand, within Psyr_1035 at 1169.124 kb on + strand, within Psyr_1035 at 1169.124 kb on + strand, within Psyr_1035 at 1169.124 kb on + strand, within Psyr_1035 at 1169.125 kb on - strand, within Psyr_1035 at 1169.125 kb on - strand, within Psyr_1035 at 1169.125 kb on - strand, within Psyr_1035 at 1169.125 kb on - strand, within Psyr_1035 at 1169.199 kb on + strand, within Psyr_1035 at 1169.199 kb on + strand, within Psyr_1035 at 1169.199 kb on + strand, within Psyr_1035 at 1169.199 kb on + strand, within Psyr_1035 at 1169.199 kb on + strand, within Psyr_1035 at 1169.200 kb on - strand, within Psyr_1035 at 1169.200 kb on - strand, within Psyr_1035 at 1169.200 kb on - strand, within Psyr_1035 at 1169.200 kb on - strand, within Psyr_1035 at 1169.231 kb on + strand, within Psyr_1035 at 1169.231 kb on + strand, within Psyr_1035 at 1169.291 kb on + strand at 1169.291 kb on + strand at 1169.291 kb on + strand at 1169.291 kb on + strand at 1169.292 kb on - strand at 1169.292 kb on - strand at 1169.292 kb on - strand at 1169.292 kb on - strand at 1169.295 kb on + strand at 1169.295 kb on + strand at 1169.295 kb on + strand at 1169.295 kb on + strand at 1169.295 kb on + strand at 1169.295 kb on + strand at 1169.296 kb on - strand at 1169.296 kb on - strand at 1169.296 kb on - strand at 1169.296 kb on - strand at 1169.296 kb on - strand at 1169.296 kb on - strand at 1169.296 kb on - strand at 1169.296 kb on - strand at 1169.296 kb on - strand at 1169.296 kb on - strand at 1169.296 kb on - strand at 1169.384 kb on + strand at 1169.385 kb on - strand at 1169.385 kb on - strand at 1169.394 kb on + strand at 1169.394 kb on + strand at 1169.394 kb on + strand at 1169.394 kb on + strand at 1169.394 kb on + strand at 1169.394 kb on + strand at 1169.394 kb on + strand at 1169.394 kb on + strand at 1169.394 kb on + strand at 1169.394 kb on + strand at 1169.394 kb on + strand at 1169.394 kb on + strand at 1169.395 kb on - strand at 1169.395 kb on - strand at 1169.395 kb on - strand at 1169.395 kb on - strand at 1169.395 kb on - strand at 1169.395 kb on - strand at 1169.395 kb on - strand at 1169.395 kb on - strand at 1169.395 kb on - strand at 1169.395 kb on - strand at 1169.395 kb on - strand at 1169.401 kb on - strand at 1169.401 kb on - strand at 1169.433 kb on + strand at 1169.437 kb on + strand at 1169.437 kb on + strand at 1169.437 kb on + strand at 1169.437 kb on + strand at 1169.437 kb on + strand at 1169.437 kb on + strand at 1169.438 kb on - strand at 1169.438 kb on - strand at 1169.438 kb on - strand at 1169.438 kb on - strand at 1169.504 kb on + strand at 1169.505 kb on - strand at 1169.505 kb on - strand at 1169.717 kb on + strand, within Psyr_1036 at 1169.717 kb on + strand, within Psyr_1036 at 1169.718 kb on - strand, within Psyr_1036 at 1169.718 kb on - strand, within Psyr_1036 at 1169.923 kb on + strand at 1169.924 kb on - strand at 1169.924 kb on - strand at 1169.940 kb on - strand at 1170.049 kb on + strand at 1170.114 kb on + strand at 1170.117 kb on + strand at 1170.117 kb on + strand at 1170.117 kb on + strand at 1170.143 kb on + strand at 1170.162 kb on + strand at 1170.162 kb on + strand at 1170.453 kb on + strand at 1170.453 kb on + strand at 1170.453 kb on + strand at 1170.454 kb on - strand at 1170.571 kb on + strand at 1170.680 kb on - strand at 1170.680 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ampicillin 0.775 ug/ml remove 1,168,618 + Psyr_1034 0.41 +0.3 1,168,618 + Psyr_1034 0.41 +0.7 1,168,618 + Psyr_1034 0.41 +0.2 1,168,619 - Psyr_1034 0.41 -1.6 1,168,619 - Psyr_1034 0.41 -0.4 1,168,619 - Psyr_1034 0.41 -0.4 1,168,619 - Psyr_1034 0.41 +0.2 1,168,619 - Psyr_1034 0.41 +0.9 1,168,619 - Psyr_1034 0.41 +0.4 1,168,619 - Psyr_1034 0.41 +0.9 1,168,619 - Psyr_1034 0.41 -0.2 1,168,648 + Psyr_1034 0.47 -0.3 1,168,648 + Psyr_1034 0.47 +0.4 1,168,649 - Psyr_1034 0.47 +0.5 1,168,687 + Psyr_1034 0.55 -0.7 1,168,687 + Psyr_1034 0.55 -1.1 1,168,687 + Psyr_1034 0.55 -0.7 1,168,687 + Psyr_1034 0.55 +0.4 1,168,687 + Psyr_1034 0.55 +0.2 1,168,687 + Psyr_1034 0.55 -0.1 1,168,687 + Psyr_1034 0.55 -0.8 1,168,687 + Psyr_1034 0.55 +2.7 1,168,687 + Psyr_1034 0.55 -0.0 1,168,687 + Psyr_1034 0.55 -1.1 1,168,687 + Psyr_1034 0.55 -0.3 1,168,688 - Psyr_1034 0.55 +0.5 1,168,688 - Psyr_1034 0.55 +0.1 1,168,688 - Psyr_1034 0.55 -0.5 1,168,688 - Psyr_1034 0.55 -0.3 1,168,688 - Psyr_1034 0.55 +1.9 1,168,688 - Psyr_1034 0.55 -0.7 1,168,688 - Psyr_1034 0.55 +0.5 1,168,688 - Psyr_1034 0.55 -0.7 1,168,688 - Psyr_1034 0.55 -1.3 1,168,765 + Psyr_1034 0.71 -0.1 1,168,765 + Psyr_1034 0.71 +0.3 1,168,765 + Psyr_1034 0.71 +0.0 1,168,766 - Psyr_1034 0.71 -1.2 1,168,766 - Psyr_1034 0.71 -0.5 1,168,825 + Psyr_1034 0.83 +0.1 1,168,825 + Psyr_1034 0.83 +0.4 1,168,825 + Psyr_1034 0.83 -0.6 1,168,825 + Psyr_1034 0.83 +0.2 1,168,825 + Psyr_1034 0.83 +0.6 1,168,825 + Psyr_1034 0.83 +0.3 1,168,826 - Psyr_1034 0.84 +0.2 1,168,832 - Psyr_1034 0.85 +0.4 1,168,908 + -2.1 1,168,908 + +1.3 1,168,908 + +0.0 1,168,909 - +0.3 1,168,952 + +0.0 1,168,953 - +1.3 1,168,953 - -0.9 1,168,954 + -0.2 1,168,954 + -0.0 1,168,954 + +0.6 1,168,954 + +0.3 1,168,954 + +0.4 1,168,954 + -0.1 1,168,955 - -0.9 1,168,955 - -0.3 1,168,955 - +1.9 1,168,955 - -2.1 1,169,034 + Psyr_1035 0.20 -0.1 1,169,034 + Psyr_1035 0.20 +1.3 1,169,034 + Psyr_1035 0.20 -0.2 1,169,034 + Psyr_1035 0.20 -0.8 1,169,034 + Psyr_1035 0.20 +0.3 1,169,035 - Psyr_1035 0.20 +0.7 1,169,035 - Psyr_1035 0.20 -0.5 1,169,035 - Psyr_1035 0.20 +2.0 1,169,035 - Psyr_1035 0.20 -0.7 1,169,035 - Psyr_1035 0.20 +0.3 1,169,035 - Psyr_1035 0.20 -0.1 1,169,035 - Psyr_1035 0.20 +0.7 1,169,035 - Psyr_1035 0.20 -0.9 1,169,035 - Psyr_1035 0.20 +0.5 1,169,035 - Psyr_1035 0.20 +1.4 1,169,120 + Psyr_1035 0.46 +2.5 1,169,120 + Psyr_1035 0.46 -0.4 1,169,120 + Psyr_1035 0.46 +0.2 1,169,120 + Psyr_1035 0.46 +1.9 1,169,121 - Psyr_1035 0.46 +0.6 1,169,121 - Psyr_1035 0.46 +1.1 1,169,121 - Psyr_1035 0.46 +0.8 1,169,121 - Psyr_1035 0.46 -0.3 1,169,124 + Psyr_1035 0.47 +0.5 1,169,124 + Psyr_1035 0.47 +0.0 1,169,124 + Psyr_1035 0.47 +0.4 1,169,124 + Psyr_1035 0.47 -0.3 1,169,124 + Psyr_1035 0.47 -0.1 1,169,124 + Psyr_1035 0.47 +0.9 1,169,124 + Psyr_1035 0.47 +0.7 1,169,125 - Psyr_1035 0.47 +0.1 1,169,125 - Psyr_1035 0.47 +0.7 1,169,125 - Psyr_1035 0.47 +0.2 1,169,125 - Psyr_1035 0.47 -0.2 1,169,199 + Psyr_1035 0.70 -0.8 1,169,199 + Psyr_1035 0.70 -0.7 1,169,199 + Psyr_1035 0.70 +0.2 1,169,199 + Psyr_1035 0.70 +1.5 1,169,199 + Psyr_1035 0.70 -0.3 1,169,200 - Psyr_1035 0.70 -0.0 1,169,200 - Psyr_1035 0.70 +0.5 1,169,200 - Psyr_1035 0.70 +0.8 1,169,200 - Psyr_1035 0.70 -0.4 1,169,231 + Psyr_1035 0.79 +1.1 1,169,231 + Psyr_1035 0.79 -0.2 1,169,291 + -1.4 1,169,291 + -0.0 1,169,291 + +0.2 1,169,291 + +0.1 1,169,292 - +0.0 1,169,292 - -0.3 1,169,292 - +1.4 1,169,292 - +0.3 1,169,295 + +0.3 1,169,295 + +0.7 1,169,295 + +0.1 1,169,295 + +0.3 1,169,295 + +0.1 1,169,295 + +0.0 1,169,296 - +1.3 1,169,296 - +1.5 1,169,296 - -1.1 1,169,296 - -0.3 1,169,296 - +0.2 1,169,296 - -1.0 1,169,296 - -0.2 1,169,296 - +0.0 1,169,296 - +1.6 1,169,296 - +0.6 1,169,296 - +1.2 1,169,384 + +1.5 1,169,385 - -0.2 1,169,385 - -0.1 1,169,394 + +1.2 1,169,394 + -1.8 1,169,394 + +0.1 1,169,394 + +0.1 1,169,394 + +1.1 1,169,394 + -0.2 1,169,394 + +0.1 1,169,394 + +0.3 1,169,394 + +0.9 1,169,394 + -2.6 1,169,394 + +0.9 1,169,394 + +0.9 1,169,395 - +0.9 1,169,395 - -0.6 1,169,395 - +0.5 1,169,395 - -0.2 1,169,395 - -1.1 1,169,395 - +0.2 1,169,395 - -1.5 1,169,395 - +0.1 1,169,395 - +0.0 1,169,395 - +0.5 1,169,395 - +0.7 1,169,401 - -0.8 1,169,401 - +0.3 1,169,433 + -1.1 1,169,437 + +1.0 1,169,437 + -0.4 1,169,437 + +0.5 1,169,437 + -0.1 1,169,437 + +1.1 1,169,437 + -0.7 1,169,438 - -0.1 1,169,438 - +2.5 1,169,438 - +0.5 1,169,438 - -0.8 1,169,504 + +0.1 1,169,505 - -1.3 1,169,505 - -1.3 1,169,717 + Psyr_1036 0.46 +0.8 1,169,717 + Psyr_1036 0.46 +2.2 1,169,718 - Psyr_1036 0.46 +1.5 1,169,718 - Psyr_1036 0.46 +0.2 1,169,923 + -0.5 1,169,924 - +0.2 1,169,924 - -0.0 1,169,940 - +0.0 1,170,049 + -0.5 1,170,114 + -0.2 1,170,117 + -0.2 1,170,117 + -1.3 1,170,117 + -0.6 1,170,143 + +0.9 1,170,162 + -0.4 1,170,162 + +0.5 1,170,453 + +1.7 1,170,453 + +0.4 1,170,453 + -0.6 1,170,454 - -1.5 1,170,571 + -1.2 1,170,680 - -0.9 1,170,680 - -1.2
Or see this region's nucleotide sequence