Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0864

Experiment: KB with Ampicillin 0.775 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0862 and Psyr_0863 are separated by 227 nucleotidesPsyr_0863 and Psyr_0864 are separated by 108 nucleotidesPsyr_0864 and Psyr_0865 are separated by 267 nucleotides Psyr_0862: Psyr_0862 - Acyltransferase 3, at 981,424 to 983,445 _0862 Psyr_0863: Psyr_0863 - PhnA protein, at 983,673 to 984,047 _0863 Psyr_0864: Psyr_0864 - Protein of unknown function DUF393, at 984,156 to 984,587 _0864 Psyr_0865: Psyr_0865 - General substrate transporter:Major facilitator superfamily, at 984,855 to 986,063 _0865 Position (kb) 984 985Strain fitness (log2 ratio) -2 -1 0 1at 983.257 kb on + strandat 983.257 kb on + strandat 983.257 kb on + strandat 983.258 kb on - strandat 983.258 kb on - strandat 983.258 kb on - strandat 983.258 kb on - strandat 983.258 kb on - strandat 983.258 kb on - strandat 983.463 kb on + strandat 983.463 kb on + strandat 983.463 kb on + strandat 983.463 kb on + strandat 983.463 kb on + strandat 983.464 kb on - strandat 983.464 kb on - strandat 983.464 kb on - strandat 983.464 kb on - strandat 983.481 kb on - strandat 983.497 kb on - strandat 983.497 kb on - strandat 983.497 kb on - strandat 983.497 kb on - strandat 983.497 kb on - strandat 983.501 kb on - strandat 983.529 kb on + strandat 983.530 kb on - strandat 983.530 kb on - strandat 983.577 kb on + strandat 983.577 kb on + strandat 983.578 kb on - strandat 983.578 kb on - strandat 983.666 kb on - strandat 983.666 kb on - strandat 983.667 kb on + strandat 983.667 kb on + strandat 983.667 kb on + strandat 983.667 kb on + strandat 983.667 kb on + strandat 983.668 kb on - strandat 983.668 kb on - strandat 983.680 kb on + strandat 983.742 kb on + strand, within Psyr_0863at 983.748 kb on + strand, within Psyr_0863at 983.748 kb on + strand, within Psyr_0863at 983.748 kb on + strand, within Psyr_0863at 983.748 kb on + strand, within Psyr_0863at 983.748 kb on + strand, within Psyr_0863at 983.748 kb on + strand, within Psyr_0863at 983.749 kb on - strand, within Psyr_0863at 983.749 kb on - strand, within Psyr_0863at 983.749 kb on - strand, within Psyr_0863at 983.749 kb on - strand, within Psyr_0863at 984.067 kb on + strandat 984.178 kb on - strandat 984.353 kb on + strand, within Psyr_0864at 984.354 kb on - strand, within Psyr_0864at 984.489 kb on + strand, within Psyr_0864at 984.490 kb on - strand, within Psyr_0864at 984.490 kb on - strand, within Psyr_0864at 984.490 kb on - strand, within Psyr_0864at 984.490 kb on - strand, within Psyr_0864at 984.605 kb on + strandat 984.606 kb on - strandat 984.652 kb on + strandat 984.692 kb on + strandat 984.781 kb on + strandat 984.781 kb on + strandat 984.782 kb on - strandat 984.860 kb on - strandat 984.935 kb on + strandat 984.969 kb on - strandat 984.969 kb on - strandat 985.026 kb on + strand, within Psyr_0865at 985.026 kb on + strand, within Psyr_0865at 985.026 kb on + strand, within Psyr_0865at 985.026 kb on + strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.310 kb on - strand, within Psyr_0865at 985.396 kb on + strand, within Psyr_0865at 985.501 kb on - strand, within Psyr_0865at 985.501 kb on - strand, within Psyr_0865at 985.501 kb on - strand, within Psyr_0865at 985.501 kb on - strand, within Psyr_0865at 985.542 kb on + strand, within Psyr_0865at 985.542 kb on + strand, within Psyr_0865at 985.543 kb on - strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ampicillin 0.775 ug/ml
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983,257 + -1.2
983,257 + -0.3
983,257 + +0.5
983,258 - -0.1
983,258 - +1.1
983,258 - +0.5
983,258 - +1.3
983,258 - -0.5
983,258 - +0.2
983,463 + +0.9
983,463 + +1.5
983,463 + -1.4
983,463 + -0.2
983,463 + +0.6
983,464 - -0.2
983,464 - +0.5
983,464 - -0.3
983,464 - -0.0
983,481 - -0.2
983,497 - +0.7
983,497 - +0.9
983,497 - -0.5
983,497 - -1.6
983,497 - +0.9
983,501 - +0.5
983,529 + -0.3
983,530 - +0.5
983,530 - +0.3
983,577 + +0.4
983,577 + +0.6
983,578 - -0.1
983,578 - +0.9
983,666 - +0.5
983,666 - -1.8
983,667 + -0.1
983,667 + -0.1
983,667 + -0.3
983,667 + +1.6
983,667 + -0.1
983,668 - -0.2
983,668 - +1.1
983,680 + +0.5
983,742 + Psyr_0863 0.18 +0.9
983,748 + Psyr_0863 0.20 +0.4
983,748 + Psyr_0863 0.20 +1.2
983,748 + Psyr_0863 0.20 +0.3
983,748 + Psyr_0863 0.20 +0.2
983,748 + Psyr_0863 0.20 +0.3
983,748 + Psyr_0863 0.20 +0.9
983,749 - Psyr_0863 0.20 -1.3
983,749 - Psyr_0863 0.20 -0.7
983,749 - Psyr_0863 0.20 +0.9
983,749 - Psyr_0863 0.20 +1.3
984,067 + -1.0
984,178 - -0.4
984,353 + Psyr_0864 0.46 -0.7
984,354 - Psyr_0864 0.46 +1.6
984,489 + Psyr_0864 0.77 -0.1
984,490 - Psyr_0864 0.77 +0.5
984,490 - Psyr_0864 0.77 -0.6
984,490 - Psyr_0864 0.77 -0.1
984,490 - Psyr_0864 0.77 +1.2
984,605 + -0.1
984,606 - -1.4
984,652 + -0.0
984,692 + -0.1
984,781 + -0.3
984,781 + +0.2
984,782 - +0.1
984,860 - +0.9
984,935 + -0.4
984,969 - -0.1
984,969 - +1.5
985,026 + Psyr_0865 0.14 -2.1
985,026 + Psyr_0865 0.14 +0.6
985,026 + Psyr_0865 0.14 +0.4
985,026 + Psyr_0865 0.14 -0.3
985,027 - Psyr_0865 0.14 +0.4
985,027 - Psyr_0865 0.14 +0.5
985,027 - Psyr_0865 0.14 +0.1
985,027 - Psyr_0865 0.14 -0.1
985,027 - Psyr_0865 0.14 -1.2
985,027 - Psyr_0865 0.14 +0.5
985,027 - Psyr_0865 0.14 +0.2
985,310 - Psyr_0865 0.38 -0.2
985,396 + Psyr_0865 0.45 -0.5
985,501 - Psyr_0865 0.53 -1.1
985,501 - Psyr_0865 0.53 +0.4
985,501 - Psyr_0865 0.53 +0.9
985,501 - Psyr_0865 0.53 -0.0
985,542 + Psyr_0865 0.57 -0.4
985,542 + Psyr_0865 0.57 -0.3
985,543 - Psyr_0865 0.57 -0.4
985,548 + Psyr_0865 0.57 +0.1
985,548 + Psyr_0865 0.57 +0.5
985,548 + Psyr_0865 0.57 +0.2
985,548 + Psyr_0865 0.57 -1.6
985,548 + Psyr_0865 0.57 -0.9
985,548 + Psyr_0865 0.57 +1.2
985,549 - Psyr_0865 0.57 +1.1
985,549 - Psyr_0865 0.57 +0.4
985,549 - Psyr_0865 0.57 +0.2
985,549 - Psyr_0865 0.57 +0.1
985,549 - Psyr_0865 0.57 +0.4
985,549 - Psyr_0865 0.57 +0.2
985,549 - Psyr_0865 0.57 -0.3
985,549 - Psyr_0865 0.57 +0.2
985,549 - Psyr_0865 0.57 +0.4
985,549 - Psyr_0865 0.57 +1.0
985,549 - Psyr_0865 0.57 -0.1
985,549 - Psyr_0865 0.57 +1.2
985,549 - Psyr_0865 0.57 -1.8
985,549 - Psyr_0865 0.57 -1.4
985,549 - Psyr_0865 0.57 +0.4

Or see this region's nucleotide sequence