Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_563

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_561 and PfGW456L13_562 are separated by 108 nucleotidesPfGW456L13_562 and PfGW456L13_563 are separated by 28 nucleotidesPfGW456L13_563 and PfGW456L13_564 overlap by 4 nucleotides PfGW456L13_561 - Outer membrane receptor proteins, mostly Fe transport, at 659,456 to 659,776 _561 PfGW456L13_562 - Holliday junction resolvasome, helicase subunit, at 659,885 to 660,202 _562 PfGW456L13_563 - FIG00953248: hypothetical protein, at 660,231 to 660,551 _563 PfGW456L13_564 - FIG00953482: hypothetical protein, at 660,548 to 662,509 _564 Position (kb) 660 661Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 659.359 kb on + strandat 659.359 kb on + strandat 659.359 kb on + strandat 659.359 kb on + strandat 659.360 kb on - strandat 659.362 kb on + strandat 659.362 kb on + strandat 659.363 kb on - strandat 659.363 kb on - strandat 659.363 kb on - strandat 659.452 kb on - strandat 659.452 kb on - strandat 659.547 kb on + strand, within PfGW456L13_561at 659.547 kb on + strand, within PfGW456L13_561at 659.547 kb on + strand, within PfGW456L13_561at 659.547 kb on + strand, within PfGW456L13_561at 659.547 kb on + strand, within PfGW456L13_561at 659.547 kb on + strand, within PfGW456L13_561at 659.547 kb on + strand, within PfGW456L13_561at 659.548 kb on - strand, within PfGW456L13_561at 659.548 kb on - strand, within PfGW456L13_561at 659.551 kb on + strand, within PfGW456L13_561at 659.592 kb on + strand, within PfGW456L13_561at 659.593 kb on - strand, within PfGW456L13_561at 659.774 kb on + strandat 659.774 kb on + strandat 659.774 kb on + strandat 659.835 kb on - strandat 659.926 kb on + strand, within PfGW456L13_562at 659.926 kb on + strand, within PfGW456L13_562at 659.926 kb on + strand, within PfGW456L13_562at 659.936 kb on + strand, within PfGW456L13_562at 659.936 kb on + strand, within PfGW456L13_562at 659.958 kb on - strand, within PfGW456L13_562at 659.958 kb on - strand, within PfGW456L13_562at 659.958 kb on - strand, within PfGW456L13_562at 660.132 kb on - strand, within PfGW456L13_562at 660.200 kb on + strandat 660.200 kb on + strandat 660.200 kb on + strandat 660.200 kb on + strandat 660.200 kb on + strandat 660.200 kb on + strandat 660.200 kb on + strandat 660.201 kb on - strandat 660.201 kb on - strandat 660.204 kb on + strandat 660.204 kb on + strandat 660.204 kb on + strandat 660.204 kb on + strandat 660.204 kb on + strandat 660.205 kb on - strandat 660.205 kb on - strandat 660.205 kb on - strandat 660.205 kb on - strandat 660.259 kb on + strandat 660.259 kb on + strandat 660.259 kb on + strandat 660.259 kb on + strandat 660.259 kb on + strandat 660.259 kb on + strandat 660.259 kb on + strandat 660.259 kb on + strandat 660.259 kb on + strandat 660.260 kb on - strandat 660.260 kb on - strandat 660.260 kb on - strandat 660.260 kb on - strandat 660.260 kb on - strandat 660.260 kb on - strandat 660.260 kb on - strandat 660.260 kb on - strandat 660.260 kb on - strandat 660.260 kb on - strandat 660.260 kb on - strandat 660.296 kb on + strand, within PfGW456L13_563at 660.296 kb on + strand, within PfGW456L13_563at 660.296 kb on + strand, within PfGW456L13_563at 660.296 kb on + strand, within PfGW456L13_563at 660.296 kb on + strand, within PfGW456L13_563at 660.296 kb on + strand, within PfGW456L13_563at 660.296 kb on + strand, within PfGW456L13_563at 660.296 kb on + strand, within PfGW456L13_563at 660.296 kb on + strand, within PfGW456L13_563at 660.297 kb on - strand, within PfGW456L13_563at 660.297 kb on - strand, within PfGW456L13_563at 660.297 kb on - strand, within PfGW456L13_563at 660.297 kb on - strand, within PfGW456L13_563at 660.297 kb on - strand, within PfGW456L13_563at 660.297 kb on - strand, within PfGW456L13_563at 660.297 kb on - strand, within PfGW456L13_563at 660.297 kb on - strand, within PfGW456L13_563at 660.297 kb on - strand, within PfGW456L13_563at 660.297 kb on - strand, within PfGW456L13_563at 660.297 kb on - strand, within PfGW456L13_563at 660.297 kb on - strand, within PfGW456L13_563at 660.297 kb on - strand, within PfGW456L13_563at 660.297 kb on - strand, within PfGW456L13_563at 660.314 kb on + strand, within PfGW456L13_563at 660.314 kb on + strand, within PfGW456L13_563at 660.315 kb on - strand, within PfGW456L13_563at 660.315 kb on - strand, within PfGW456L13_563at 660.315 kb on - strand, within PfGW456L13_563at 660.317 kb on + strand, within PfGW456L13_563at 660.317 kb on + strand, within PfGW456L13_563at 660.318 kb on - strand, within PfGW456L13_563at 660.318 kb on - strand, within PfGW456L13_563at 660.318 kb on - strand, within PfGW456L13_563at 660.368 kb on + strand, within PfGW456L13_563at 660.368 kb on + strand, within PfGW456L13_563at 660.368 kb on + strand, within PfGW456L13_563at 660.368 kb on + strand, within PfGW456L13_563at 660.368 kb on + strand, within PfGW456L13_563at 660.368 kb on + strand, within PfGW456L13_563at 660.368 kb on + strand, within PfGW456L13_563at 660.369 kb on - strand, within PfGW456L13_563at 660.369 kb on - strand, within PfGW456L13_563at 660.369 kb on - strand, within PfGW456L13_563at 660.369 kb on - strand, within PfGW456L13_563at 660.369 kb on - strand, within PfGW456L13_563at 660.369 kb on - strand, within PfGW456L13_563at 660.369 kb on - strand, within PfGW456L13_563at 660.369 kb on - strand, within PfGW456L13_563at 660.369 kb on - strand, within PfGW456L13_563at 660.369 kb on - strand, within PfGW456L13_563at 660.624 kb on + strandat 660.624 kb on + strandat 660.624 kb on + strandat 660.624 kb on + strandat 660.624 kb on + strandat 660.624 kb on + strandat 660.625 kb on - strandat 660.625 kb on - strandat 660.625 kb on - strandat 660.625 kb on - strandat 660.932 kb on + strand, within PfGW456L13_564at 660.933 kb on - strand, within PfGW456L13_564at 660.933 kb on - strand, within PfGW456L13_564at 660.933 kb on - strand, within PfGW456L13_564at 660.933 kb on - strand, within PfGW456L13_564at 661.106 kb on + strand, within PfGW456L13_564at 661.106 kb on + strand, within PfGW456L13_564at 661.106 kb on + strand, within PfGW456L13_564at 661.106 kb on + strand, within PfGW456L13_564at 661.106 kb on + strand, within PfGW456L13_564at 661.106 kb on + strand, within PfGW456L13_564at 661.106 kb on + strand, within PfGW456L13_564at 661.106 kb on + strand, within PfGW456L13_564at 661.106 kb on + strand, within PfGW456L13_564at 661.106 kb on + strand, within PfGW456L13_564at 661.106 kb on + strand, within PfGW456L13_564at 661.106 kb on + strand, within PfGW456L13_564at 661.107 kb on - strand, within PfGW456L13_564at 661.107 kb on - strand, within PfGW456L13_564at 661.107 kb on - strand, within PfGW456L13_564at 661.107 kb on - strand, within PfGW456L13_564at 661.107 kb on - strand, within PfGW456L13_564at 661.107 kb on - strand, within PfGW456L13_564at 661.107 kb on - strand, within PfGW456L13_564at 661.107 kb on - strand, within PfGW456L13_564at 661.107 kb on - strand, within PfGW456L13_564at 661.107 kb on - strand, within PfGW456L13_564at 661.107 kb on - strand, within PfGW456L13_564at 661.107 kb on - strand, within PfGW456L13_564at 661.110 kb on + strand, within PfGW456L13_564at 661.110 kb on + strand, within PfGW456L13_564at 661.111 kb on - strand, within PfGW456L13_564at 661.111 kb on - strand, within PfGW456L13_564at 661.169 kb on + strand, within PfGW456L13_564at 661.169 kb on + strand, within PfGW456L13_564at 661.169 kb on + strand, within PfGW456L13_564at 661.169 kb on + strand, within PfGW456L13_564at 661.169 kb on + strand, within PfGW456L13_564at 661.169 kb on + strand, within PfGW456L13_564at 661.170 kb on - strand, within PfGW456L13_564at 661.170 kb on - strand, within PfGW456L13_564at 661.170 kb on - strand, within PfGW456L13_564at 661.170 kb on - strand, within PfGW456L13_564at 661.170 kb on - strand, within PfGW456L13_564at 661.170 kb on - strand, within PfGW456L13_564at 661.170 kb on - strand, within PfGW456L13_564at 661.214 kb on + strand, within PfGW456L13_564at 661.214 kb on + strand, within PfGW456L13_564at 661.214 kb on + strand, within PfGW456L13_564at 661.215 kb on - strand, within PfGW456L13_564at 661.215 kb on - strand, within PfGW456L13_564at 661.215 kb on - strand, within PfGW456L13_564at 661.235 kb on + strand, within PfGW456L13_564at 661.235 kb on + strand, within PfGW456L13_564at 661.235 kb on + strandat 661.235 kb on + strand, within PfGW456L13_564at 661.236 kb on - strand, within PfGW456L13_564at 661.236 kb on - strand, within PfGW456L13_564at 661.260 kb on - strand, within PfGW456L13_564at 661.268 kb on + strand, within PfGW456L13_564at 661.269 kb on - strand, within PfGW456L13_564at 661.269 kb on - strand, within PfGW456L13_564at 661.269 kb on - strand, within PfGW456L13_564at 661.312 kb on + strand, within PfGW456L13_564at 661.313 kb on - strand, within PfGW456L13_564at 661.313 kb on - strand, within PfGW456L13_564at 661.391 kb on + strand, within PfGW456L13_564at 661.391 kb on + strand, within PfGW456L13_564at 661.391 kb on + strand, within PfGW456L13_564at 661.392 kb on - strand, within PfGW456L13_564at 661.392 kb on - strand, within PfGW456L13_564at 661.392 kb on - strand, within PfGW456L13_564at 661.392 kb on - strand, within PfGW456L13_564at 661.392 kb on - strand, within PfGW456L13_564at 661.403 kb on + strand, within PfGW456L13_564at 661.403 kb on + strand, within PfGW456L13_564at 661.404 kb on - strand, within PfGW456L13_564at 661.404 kb on - strand, within PfGW456L13_564

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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659,359 + +0.9
659,359 + -1.8
659,359 + -0.2
659,359 + -0.4
659,360 - +1.3
659,362 + -0.7
659,362 + +1.7
659,363 - +0.1
659,363 - +1.0
659,363 - +1.0
659,452 - -1.1
659,452 - -1.5
659,547 + PfGW456L13_561 0.28 -0.7
659,547 + PfGW456L13_561 0.28 -0.9
659,547 + PfGW456L13_561 0.28 +0.6
659,547 + PfGW456L13_561 0.28 -1.8
659,547 + PfGW456L13_561 0.28 -0.4
659,547 + PfGW456L13_561 0.28 -0.4
659,547 + PfGW456L13_561 0.28 +1.8
659,548 - PfGW456L13_561 0.29 +1.0
659,548 - PfGW456L13_561 0.29 -0.8
659,551 + PfGW456L13_561 0.30 -0.1
659,592 + PfGW456L13_561 0.42 +0.8
659,593 - PfGW456L13_561 0.43 +0.2
659,774 + -3.1
659,774 + +0.9
659,774 + +1.4
659,835 - -0.8
659,926 + PfGW456L13_562 0.13 -0.0
659,926 + PfGW456L13_562 0.13 -0.1
659,926 + PfGW456L13_562 0.13 +0.6
659,936 + PfGW456L13_562 0.16 -2.7
659,936 + PfGW456L13_562 0.16 +1.2
659,958 - PfGW456L13_562 0.23 -0.8
659,958 - PfGW456L13_562 0.23 +0.6
659,958 - PfGW456L13_562 0.23 +0.4
660,132 - PfGW456L13_562 0.78 +0.4
660,200 + -0.6
660,200 + +1.3
660,200 + +1.1
660,200 + +0.2
660,200 + +0.1
660,200 + -0.6
660,200 + -0.4
660,201 - +0.8
660,201 - +0.8
660,204 + +1.1
660,204 + -1.1
660,204 + -3.6
660,204 + +0.1
660,204 + +0.6
660,205 - -2.2
660,205 - +0.3
660,205 - -2.2
660,205 - -0.2
660,259 + +0.3
660,259 + -1.4
660,259 + +1.2
660,259 + -0.7
660,259 + -0.8
660,259 + +0.4
660,259 + +0.9
660,259 + +1.0
660,259 + -0.2
660,260 - +0.9
660,260 - -2.9
660,260 - +0.5
660,260 - +0.7
660,260 - -1.0
660,260 - +0.2
660,260 - +0.4
660,260 - +2.1
660,260 - +0.8
660,260 - +0.8
660,260 - +0.0
660,296 + PfGW456L13_563 0.20 -0.6
660,296 + PfGW456L13_563 0.20 +1.1
660,296 + PfGW456L13_563 0.20 +1.7
660,296 + PfGW456L13_563 0.20 +1.2
660,296 + PfGW456L13_563 0.20 +0.7
660,296 + PfGW456L13_563 0.20 -0.8
660,296 + PfGW456L13_563 0.20 -3.1
660,296 + PfGW456L13_563 0.20 +0.6
660,296 + PfGW456L13_563 0.20 +0.6
660,297 - PfGW456L13_563 0.21 +0.9
660,297 - PfGW456L13_563 0.21 -3.2
660,297 - PfGW456L13_563 0.21 -1.4
660,297 - PfGW456L13_563 0.21 +0.1
660,297 - PfGW456L13_563 0.21 +1.1
660,297 - PfGW456L13_563 0.21 +1.1
660,297 - PfGW456L13_563 0.21 +0.6
660,297 - PfGW456L13_563 0.21 +0.5
660,297 - PfGW456L13_563 0.21 +1.5
660,297 - PfGW456L13_563 0.21 -0.3
660,297 - PfGW456L13_563 0.21 -1.5
660,297 - PfGW456L13_563 0.21 +0.1
660,297 - PfGW456L13_563 0.21 -2.7
660,297 - PfGW456L13_563 0.21 +2.5
660,314 + PfGW456L13_563 0.26 +0.2
660,314 + PfGW456L13_563 0.26 +0.7
660,315 - PfGW456L13_563 0.26 +1.1
660,315 - PfGW456L13_563 0.26 -0.9
660,315 - PfGW456L13_563 0.26 +1.1
660,317 + PfGW456L13_563 0.27 +1.6
660,317 + PfGW456L13_563 0.27 -3.6
660,318 - PfGW456L13_563 0.27 +1.6
660,318 - PfGW456L13_563 0.27 -1.8
660,318 - PfGW456L13_563 0.27 +0.9
660,368 + PfGW456L13_563 0.43 +0.9
660,368 + PfGW456L13_563 0.43 -0.6
660,368 + PfGW456L13_563 0.43 -1.4
660,368 + PfGW456L13_563 0.43 -2.0
660,368 + PfGW456L13_563 0.43 -0.0
660,368 + PfGW456L13_563 0.43 +0.7
660,368 + PfGW456L13_563 0.43 +0.4
660,369 - PfGW456L13_563 0.43 -0.3
660,369 - PfGW456L13_563 0.43 -0.2
660,369 - PfGW456L13_563 0.43 -2.8
660,369 - PfGW456L13_563 0.43 +1.4
660,369 - PfGW456L13_563 0.43 +0.3
660,369 - PfGW456L13_563 0.43 +1.8
660,369 - PfGW456L13_563 0.43 +0.4
660,369 - PfGW456L13_563 0.43 +0.6
660,369 - PfGW456L13_563 0.43 +0.1
660,369 - PfGW456L13_563 0.43 +0.2
660,624 + +0.3
660,624 + +0.1
660,624 + +1.3
660,624 + +0.1
660,624 + +0.3
660,624 + +0.6
660,625 - +0.2
660,625 - -0.4
660,625 - +2.5
660,625 - -0.4
660,932 + PfGW456L13_564 0.20 +0.6
660,933 - PfGW456L13_564 0.20 -0.8
660,933 - PfGW456L13_564 0.20 +0.8
660,933 - PfGW456L13_564 0.20 +0.3
660,933 - PfGW456L13_564 0.20 +0.2
661,106 + PfGW456L13_564 0.28 +1.7
661,106 + PfGW456L13_564 0.28 +1.5
661,106 + PfGW456L13_564 0.28 +0.5
661,106 + PfGW456L13_564 0.28 -0.0
661,106 + PfGW456L13_564 0.28 -2.4
661,106 + PfGW456L13_564 0.28 -0.9
661,106 + PfGW456L13_564 0.28 +1.7
661,106 + PfGW456L13_564 0.28 -2.1
661,106 + PfGW456L13_564 0.28 +0.7
661,106 + PfGW456L13_564 0.28 +1.0
661,106 + PfGW456L13_564 0.28 -0.5
661,106 + PfGW456L13_564 0.28 +1.5
661,107 - PfGW456L13_564 0.28 -2.7
661,107 - PfGW456L13_564 0.28 +0.3
661,107 - PfGW456L13_564 0.28 -2.4
661,107 - PfGW456L13_564 0.28 -2.4
661,107 - PfGW456L13_564 0.28 +1.1
661,107 - PfGW456L13_564 0.28 +0.4
661,107 - PfGW456L13_564 0.28 +1.7
661,107 - PfGW456L13_564 0.28 +0.5
661,107 - PfGW456L13_564 0.28 +0.1
661,107 - PfGW456L13_564 0.28 +1.2
661,107 - PfGW456L13_564 0.28 +0.7
661,107 - PfGW456L13_564 0.28 +0.5
661,110 + PfGW456L13_564 0.29 -3.1
661,110 + PfGW456L13_564 0.29 -0.6
661,111 - PfGW456L13_564 0.29 -0.8
661,111 - PfGW456L13_564 0.29 -2.1
661,169 + PfGW456L13_564 0.32 +1.7
661,169 + PfGW456L13_564 0.32 -1.0
661,169 + PfGW456L13_564 0.32 -0.1
661,169 + PfGW456L13_564 0.32 -1.7
661,169 + PfGW456L13_564 0.32 -0.4
661,169 + PfGW456L13_564 0.32 +2.8
661,170 - PfGW456L13_564 0.32 +0.0
661,170 - PfGW456L13_564 0.32 -0.0
661,170 - PfGW456L13_564 0.32 -1.7
661,170 - PfGW456L13_564 0.32 -0.9
661,170 - PfGW456L13_564 0.32 +0.5
661,170 - PfGW456L13_564 0.32 +0.9
661,170 - PfGW456L13_564 0.32 -1.9
661,214 + PfGW456L13_564 0.34 -0.6
661,214 + PfGW456L13_564 0.34 +1.0
661,214 + PfGW456L13_564 0.34 +0.2
661,215 - PfGW456L13_564 0.34 +0.6
661,215 - PfGW456L13_564 0.34 -0.1
661,215 - PfGW456L13_564 0.34 +1.2
661,235 + PfGW456L13_564 0.35 +1.2
661,235 + PfGW456L13_564 0.35 +0.9
661,235 + +0.2
661,235 + PfGW456L13_564 0.35 +0.8
661,236 - PfGW456L13_564 0.35 +0.0
661,236 - PfGW456L13_564 0.35 -2.8
661,260 - PfGW456L13_564 0.36 -0.1
661,268 + PfGW456L13_564 0.37 -2.4
661,269 - PfGW456L13_564 0.37 -1.5
661,269 - PfGW456L13_564 0.37 -0.2
661,269 - PfGW456L13_564 0.37 -0.5
661,312 + PfGW456L13_564 0.39 +1.9
661,313 - PfGW456L13_564 0.39 -2.1
661,313 - PfGW456L13_564 0.39 +1.6
661,391 + PfGW456L13_564 0.43 +0.4
661,391 + PfGW456L13_564 0.43 +1.6
661,391 + PfGW456L13_564 0.43 -0.2
661,392 - PfGW456L13_564 0.43 -2.8
661,392 - PfGW456L13_564 0.43 +0.9
661,392 - PfGW456L13_564 0.43 +1.4
661,392 - PfGW456L13_564 0.43 -2.0
661,392 - PfGW456L13_564 0.43 -3.5
661,403 + PfGW456L13_564 0.44 -0.8
661,403 + PfGW456L13_564 0.44 -4.0
661,404 - PfGW456L13_564 0.44 +0.4
661,404 - PfGW456L13_564 0.44 -2.9

Or see this region's nucleotide sequence