Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4872

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4869 and PfGW456L13_4870 are separated by 51 nucleotidesPfGW456L13_4870 and PfGW456L13_4871 are separated by 8 nucleotidesPfGW456L13_4871 and PfGW456L13_4872 are separated by 34 nucleotidesPfGW456L13_4872 and PfGW456L13_4873 are separated by 101 nucleotides PfGW456L13_4869 - Chaperone protein HscA, at 5,434,176 to 5,436,038 _4869 PfGW456L13_4870 - Chaperone protein HscB, at 5,436,090 to 5,436,611 _4870 PfGW456L13_4871 - Iron binding protein IscA for iron-sulfur cluster assembly, at 5,436,620 to 5,436,943 _4871 PfGW456L13_4872 - Iron-sulfur cluster assembly scaffold protein IscU, at 5,436,978 to 5,437,364 _4872 PfGW456L13_4873 - Cysteine desulfurase (EC 2.8.1.7), IscS subfamily, at 5,437,466 to 5,438,680 _4873 Position (kb) 5436 5437 5438Strain fitness (log2 ratio) -1 0 1 2at 5436.092 kb on - strandat 5436.956 kb on - strandat 5437.408 kb on - strandat 5437.408 kb on - strandat 5437.408 kb on - strandat 5437.437 kb on - strandat 5437.468 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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5,436,092 - -0.3
5,436,956 - +2.0
5,437,408 - -1.6
5,437,408 - +2.0
5,437,408 - -0.3
5,437,437 - +1.2
5,437,468 - -0.2

Or see this region's nucleotide sequence