Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4417

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4415 and PfGW456L13_4416 are separated by 27 nucleotidesPfGW456L13_4416 and PfGW456L13_4417 are separated by 147 nucleotidesPfGW456L13_4417 and PfGW456L13_4418 are separated by 134 nucleotidesPfGW456L13_4418 and PfGW456L13_4419 are separated by 77 nucleotides PfGW456L13_4415 - FIG027190: Putative transmembrane protein, at 4,929,206 to 4,929,517 _4415 PfGW456L13_4416 - Metal-dependent phosphohydrolase, HD subdomain, at 4,929,545 to 4,930,135 _4416 PfGW456L13_4417 - Ser/Thr protein phosphatase family protein, UDP-2,3-diacylglucosamine hydrolase (EC 3.6.1.-) homolog, at 4,930,283 to 4,931,098 _4417 PfGW456L13_4418 - Transcriptional regulator, AraC family, at 4,931,233 to 4,931,991 _4418 PfGW456L13_4419 - Permeases of the drug/metabolite transporter (DMT) superfamily, at 4,932,069 to 4,932,962 _4419 Position (kb) 4930 4931 4932Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4929.291 kb on + strand, within PfGW456L13_4415at 4929.292 kb on - strand, within PfGW456L13_4415at 4929.316 kb on + strand, within PfGW456L13_4415at 4929.455 kb on + strand, within PfGW456L13_4415at 4929.455 kb on + strand, within PfGW456L13_4415at 4929.455 kb on + strand, within PfGW456L13_4415at 4929.455 kb on + strand, within PfGW456L13_4415at 4929.455 kb on + strand, within PfGW456L13_4415at 4929.455 kb on + strand, within PfGW456L13_4415at 4929.456 kb on - strand, within PfGW456L13_4415at 4929.456 kb on - strand, within PfGW456L13_4415at 4929.456 kb on - strand, within PfGW456L13_4415at 4929.456 kb on - strand, within PfGW456L13_4415at 4929.456 kb on - strand, within PfGW456L13_4415at 4929.456 kb on - strand, within PfGW456L13_4415at 4929.456 kb on - strand, within PfGW456L13_4415at 4929.456 kb on - strand, within PfGW456L13_4415at 4929.456 kb on - strand, within PfGW456L13_4415at 4929.456 kb on - strand, within PfGW456L13_4415at 4929.456 kb on - strand, within PfGW456L13_4415at 4929.456 kb on - strand, within PfGW456L13_4415at 4929.456 kb on - strand, within PfGW456L13_4415at 4929.482 kb on + strand, within PfGW456L13_4415at 4929.515 kb on + strandat 4929.515 kb on + strandat 4929.516 kb on - strandat 4929.627 kb on - strand, within PfGW456L13_4416at 4929.764 kb on + strand, within PfGW456L13_4416at 4929.764 kb on + strand, within PfGW456L13_4416at 4929.764 kb on + strand, within PfGW456L13_4416at 4929.764 kb on + strand, within PfGW456L13_4416at 4929.764 kb on + strand, within PfGW456L13_4416at 4929.764 kb on + strand, within PfGW456L13_4416at 4929.764 kb on + strand, within PfGW456L13_4416at 4929.764 kb on + strand, within PfGW456L13_4416at 4929.764 kb on + strand, within PfGW456L13_4416at 4929.764 kb on + strand, within PfGW456L13_4416at 4929.764 kb on + strand, within PfGW456L13_4416at 4929.764 kb on + strand, within PfGW456L13_4416at 4929.765 kb on - strand, within PfGW456L13_4416at 4929.765 kb on - strand, within PfGW456L13_4416at 4929.765 kb on - strand, within PfGW456L13_4416at 4929.812 kb on + strand, within PfGW456L13_4416at 4929.812 kb on + strand, within PfGW456L13_4416at 4929.812 kb on + strand, within PfGW456L13_4416at 4929.812 kb on + strand, within PfGW456L13_4416at 4929.812 kb on + strand, within PfGW456L13_4416at 4929.813 kb on - strand, within PfGW456L13_4416at 4929.813 kb on - strand, within PfGW456L13_4416at 4929.813 kb on - strand, within PfGW456L13_4416at 4929.813 kb on - strand, within PfGW456L13_4416at 4929.813 kb on - strand, within PfGW456L13_4416at 4929.813 kb on - strand, within PfGW456L13_4416at 4929.906 kb on - strand, within PfGW456L13_4416at 4929.906 kb on - strand, within PfGW456L13_4416at 4929.906 kb on - strand, within PfGW456L13_4416at 4929.908 kb on + strand, within PfGW456L13_4416at 4929.908 kb on + strand, within PfGW456L13_4416at 4929.908 kb on + strand, within PfGW456L13_4416at 4929.909 kb on - strand, within PfGW456L13_4416at 4929.909 kb on - strand, within PfGW456L13_4416at 4929.909 kb on - strand, within PfGW456L13_4416at 4929.909 kb on - strand, within PfGW456L13_4416at 4929.909 kb on - strand, within PfGW456L13_4416at 4929.909 kb on - strand, within PfGW456L13_4416at 4929.909 kb on - strand, within PfGW456L13_4416at 4929.909 kb on - strand, within PfGW456L13_4416at 4929.909 kb on - strand, within PfGW456L13_4416at 4929.909 kb on - strand, within PfGW456L13_4416at 4929.909 kb on - strand, within PfGW456L13_4416at 4929.909 kb on - strand, within PfGW456L13_4416at 4929.909 kb on - strand, within PfGW456L13_4416at 4930.001 kb on + strand, within PfGW456L13_4416at 4930.001 kb on + strand, within PfGW456L13_4416at 4930.001 kb on + strand, within PfGW456L13_4416at 4930.002 kb on - strand, within PfGW456L13_4416at 4930.002 kb on - strand, within PfGW456L13_4416at 4930.002 kb on - strand, within PfGW456L13_4416at 4930.029 kb on - strand, within PfGW456L13_4416at 4930.100 kb on + strandat 4930.100 kb on + strandat 4930.100 kb on + strandat 4930.100 kb on + strandat 4930.101 kb on - strandat 4930.264 kb on + strandat 4930.264 kb on + strandat 4930.264 kb on + strandat 4930.265 kb on - strandat 4930.265 kb on - strandat 4930.350 kb on + strandat 4930.350 kb on + strandat 4930.423 kb on - strand, within PfGW456L13_4417at 4930.423 kb on - strand, within PfGW456L13_4417at 4930.569 kb on + strand, within PfGW456L13_4417at 4930.569 kb on + strand, within PfGW456L13_4417at 4930.569 kb on + strand, within PfGW456L13_4417at 4930.593 kb on + strand, within PfGW456L13_4417at 4930.593 kb on + strand, within PfGW456L13_4417at 4930.651 kb on - strand, within PfGW456L13_4417at 4930.718 kb on + strand, within PfGW456L13_4417at 4930.836 kb on + strand, within PfGW456L13_4417at 4930.836 kb on + strand, within PfGW456L13_4417at 4930.836 kb on + strand, within PfGW456L13_4417at 4930.836 kb on + strand, within PfGW456L13_4417at 4930.837 kb on - strand, within PfGW456L13_4417at 4930.837 kb on - strand, within PfGW456L13_4417at 4930.837 kb on - strand, within PfGW456L13_4417at 4930.837 kb on - strand, within PfGW456L13_4417at 4930.837 kb on - strand, within PfGW456L13_4417at 4930.837 kb on - strand, within PfGW456L13_4417at 4930.908 kb on + strand, within PfGW456L13_4417at 4930.908 kb on + strand, within PfGW456L13_4417at 4930.908 kb on + strand, within PfGW456L13_4417at 4930.908 kb on + strand, within PfGW456L13_4417at 4930.908 kb on + strand, within PfGW456L13_4417at 4930.908 kb on + strand, within PfGW456L13_4417at 4930.909 kb on - strand, within PfGW456L13_4417at 4930.909 kb on - strand, within PfGW456L13_4417at 4930.909 kb on - strand, within PfGW456L13_4417at 4930.909 kb on - strand, within PfGW456L13_4417at 4930.909 kb on - strand, within PfGW456L13_4417at 4930.956 kb on + strand, within PfGW456L13_4417at 4930.957 kb on - strand, within PfGW456L13_4417at 4930.957 kb on - strand, within PfGW456L13_4417at 4930.957 kb on - strand, within PfGW456L13_4417at 4930.957 kb on - strand, within PfGW456L13_4417at 4930.957 kb on - strand, within PfGW456L13_4417at 4930.957 kb on - strand, within PfGW456L13_4417at 4930.975 kb on - strand, within PfGW456L13_4417at 4931.045 kb on + strandat 4931.046 kb on - strandat 4931.143 kb on + strandat 4931.203 kb on - strandat 4931.203 kb on - strandat 4931.261 kb on - strandat 4931.261 kb on - strandat 4931.364 kb on - strand, within PfGW456L13_4418at 4931.678 kb on - strand, within PfGW456L13_4418at 4931.678 kb on - strand, within PfGW456L13_4418at 4931.707 kb on + strand, within PfGW456L13_4418at 4931.815 kb on + strand, within PfGW456L13_4418at 4931.815 kb on + strand, within PfGW456L13_4418at 4931.815 kb on + strand, within PfGW456L13_4418at 4931.815 kb on + strand, within PfGW456L13_4418at 4931.816 kb on - strand, within PfGW456L13_4418at 4931.816 kb on - strand, within PfGW456L13_4418at 4931.816 kb on - strand, within PfGW456L13_4418at 4931.816 kb on - strand, within PfGW456L13_4418at 4931.816 kb on - strandat 4931.990 kb on - strandat 4931.990 kb on - strandat 4931.990 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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4,929,291 + PfGW456L13_4415 0.27 -3.7
4,929,292 - PfGW456L13_4415 0.28 -4.1
4,929,316 + PfGW456L13_4415 0.35 -1.3
4,929,455 + PfGW456L13_4415 0.80 +0.3
4,929,455 + PfGW456L13_4415 0.80 +0.2
4,929,455 + PfGW456L13_4415 0.80 -0.9
4,929,455 + PfGW456L13_4415 0.80 -1.7
4,929,455 + PfGW456L13_4415 0.80 -1.4
4,929,455 + PfGW456L13_4415 0.80 +1.2
4,929,456 - PfGW456L13_4415 0.80 +0.8
4,929,456 - PfGW456L13_4415 0.80 +1.1
4,929,456 - PfGW456L13_4415 0.80 -0.1
4,929,456 - PfGW456L13_4415 0.80 +0.8
4,929,456 - PfGW456L13_4415 0.80 -3.1
4,929,456 - PfGW456L13_4415 0.80 -3.8
4,929,456 - PfGW456L13_4415 0.80 -0.1
4,929,456 - PfGW456L13_4415 0.80 +0.3
4,929,456 - PfGW456L13_4415 0.80 -0.5
4,929,456 - PfGW456L13_4415 0.80 +0.9
4,929,456 - PfGW456L13_4415 0.80 +1.4
4,929,456 - PfGW456L13_4415 0.80 -0.3
4,929,456 - PfGW456L13_4415 0.80 -0.0
4,929,482 + PfGW456L13_4415 0.88 -0.1
4,929,515 + -0.2
4,929,515 + +1.4
4,929,516 - +0.3
4,929,627 - PfGW456L13_4416 0.14 -1.6
4,929,764 + PfGW456L13_4416 0.37 -2.7
4,929,764 + PfGW456L13_4416 0.37 +0.9
4,929,764 + PfGW456L13_4416 0.37 -0.9
4,929,764 + PfGW456L13_4416 0.37 +0.3
4,929,764 + PfGW456L13_4416 0.37 +0.3
4,929,764 + PfGW456L13_4416 0.37 -3.9
4,929,764 + PfGW456L13_4416 0.37 -0.4
4,929,764 + PfGW456L13_4416 0.37 +1.1
4,929,764 + PfGW456L13_4416 0.37 +0.1
4,929,764 + PfGW456L13_4416 0.37 +0.5
4,929,764 + PfGW456L13_4416 0.37 +1.2
4,929,764 + PfGW456L13_4416 0.37 -0.4
4,929,765 - PfGW456L13_4416 0.37 +1.6
4,929,765 - PfGW456L13_4416 0.37 +0.3
4,929,765 - PfGW456L13_4416 0.37 -0.3
4,929,812 + PfGW456L13_4416 0.45 +1.2
4,929,812 + PfGW456L13_4416 0.45 -0.3
4,929,812 + PfGW456L13_4416 0.45 +0.6
4,929,812 + PfGW456L13_4416 0.45 +0.9
4,929,812 + PfGW456L13_4416 0.45 -2.9
4,929,813 - PfGW456L13_4416 0.45 -0.1
4,929,813 - PfGW456L13_4416 0.45 +0.1
4,929,813 - PfGW456L13_4416 0.45 +0.5
4,929,813 - PfGW456L13_4416 0.45 -1.9
4,929,813 - PfGW456L13_4416 0.45 +0.2
4,929,813 - PfGW456L13_4416 0.45 +0.3
4,929,906 - PfGW456L13_4416 0.61 -0.4
4,929,906 - PfGW456L13_4416 0.61 -0.7
4,929,906 - PfGW456L13_4416 0.61 -0.0
4,929,908 + PfGW456L13_4416 0.61 -0.0
4,929,908 + PfGW456L13_4416 0.61 -0.6
4,929,908 + PfGW456L13_4416 0.61 -1.1
4,929,909 - PfGW456L13_4416 0.62 +0.5
4,929,909 - PfGW456L13_4416 0.62 -1.5
4,929,909 - PfGW456L13_4416 0.62 +2.0
4,929,909 - PfGW456L13_4416 0.62 +0.5
4,929,909 - PfGW456L13_4416 0.62 +0.6
4,929,909 - PfGW456L13_4416 0.62 +1.4
4,929,909 - PfGW456L13_4416 0.62 +1.2
4,929,909 - PfGW456L13_4416 0.62 +0.6
4,929,909 - PfGW456L13_4416 0.62 -0.3
4,929,909 - PfGW456L13_4416 0.62 +0.3
4,929,909 - PfGW456L13_4416 0.62 +1.0
4,929,909 - PfGW456L13_4416 0.62 +0.2
4,929,909 - PfGW456L13_4416 0.62 +1.2
4,930,001 + PfGW456L13_4416 0.77 +0.4
4,930,001 + PfGW456L13_4416 0.77 -1.0
4,930,001 + PfGW456L13_4416 0.77 -0.7
4,930,002 - PfGW456L13_4416 0.77 -1.1
4,930,002 - PfGW456L13_4416 0.77 -1.2
4,930,002 - PfGW456L13_4416 0.77 -1.7
4,930,029 - PfGW456L13_4416 0.82 -0.7
4,930,100 + -0.8
4,930,100 + +0.8
4,930,100 + +1.3
4,930,100 + -3.8
4,930,101 - +0.4
4,930,264 + -1.0
4,930,264 + +0.1
4,930,264 + -1.9
4,930,265 - +0.6
4,930,265 - +1.1
4,930,350 + -0.0
4,930,350 + +1.3
4,930,423 - PfGW456L13_4417 0.17 +0.4
4,930,423 - PfGW456L13_4417 0.17 -1.5
4,930,569 + PfGW456L13_4417 0.35 +0.9
4,930,569 + PfGW456L13_4417 0.35 +0.7
4,930,569 + PfGW456L13_4417 0.35 -0.4
4,930,593 + PfGW456L13_4417 0.38 -0.1
4,930,593 + PfGW456L13_4417 0.38 -2.1
4,930,651 - PfGW456L13_4417 0.45 -0.5
4,930,718 + PfGW456L13_4417 0.53 +0.9
4,930,836 + PfGW456L13_4417 0.68 -2.0
4,930,836 + PfGW456L13_4417 0.68 +1.1
4,930,836 + PfGW456L13_4417 0.68 +2.0
4,930,836 + PfGW456L13_4417 0.68 +0.9
4,930,837 - PfGW456L13_4417 0.68 -3.2
4,930,837 - PfGW456L13_4417 0.68 +1.2
4,930,837 - PfGW456L13_4417 0.68 -3.0
4,930,837 - PfGW456L13_4417 0.68 +0.7
4,930,837 - PfGW456L13_4417 0.68 +2.5
4,930,837 - PfGW456L13_4417 0.68 -3.2
4,930,908 + PfGW456L13_4417 0.77 -1.5
4,930,908 + PfGW456L13_4417 0.77 -0.5
4,930,908 + PfGW456L13_4417 0.77 +0.7
4,930,908 + PfGW456L13_4417 0.77 +0.3
4,930,908 + PfGW456L13_4417 0.77 +0.4
4,930,908 + PfGW456L13_4417 0.77 -1.0
4,930,909 - PfGW456L13_4417 0.77 +1.3
4,930,909 - PfGW456L13_4417 0.77 +1.9
4,930,909 - PfGW456L13_4417 0.77 -0.1
4,930,909 - PfGW456L13_4417 0.77 +0.5
4,930,909 - PfGW456L13_4417 0.77 -1.3
4,930,956 + PfGW456L13_4417 0.82 +0.1
4,930,957 - PfGW456L13_4417 0.83 -1.1
4,930,957 - PfGW456L13_4417 0.83 +1.8
4,930,957 - PfGW456L13_4417 0.83 +1.1
4,930,957 - PfGW456L13_4417 0.83 -1.1
4,930,957 - PfGW456L13_4417 0.83 +0.6
4,930,957 - PfGW456L13_4417 0.83 +0.8
4,930,975 - PfGW456L13_4417 0.85 +1.4
4,931,045 + -2.3
4,931,046 - +1.3
4,931,143 + -0.3
4,931,203 - -2.5
4,931,203 - -0.3
4,931,261 - +0.8
4,931,261 - +1.2
4,931,364 - PfGW456L13_4418 0.17 -1.5
4,931,678 - PfGW456L13_4418 0.59 -2.1
4,931,678 - PfGW456L13_4418 0.59 +0.6
4,931,707 + PfGW456L13_4418 0.62 +1.7
4,931,815 + PfGW456L13_4418 0.77 -0.7
4,931,815 + PfGW456L13_4418 0.77 +0.2
4,931,815 + PfGW456L13_4418 0.77 +0.8
4,931,815 + PfGW456L13_4418 0.77 +0.1
4,931,816 - PfGW456L13_4418 0.77 -1.4
4,931,816 - PfGW456L13_4418 0.77 -0.7
4,931,816 - PfGW456L13_4418 0.77 +1.7
4,931,816 - PfGW456L13_4418 0.77 -0.9
4,931,816 - +1.1
4,931,990 - -2.6
4,931,990 - +1.0
4,931,990 - -0.0

Or see this region's nucleotide sequence