Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4413

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4411 and PfGW456L13_4412 are separated by 21 nucleotidesPfGW456L13_4412 and PfGW456L13_4413 are separated by 121 nucleotidesPfGW456L13_4413 and PfGW456L13_4414 overlap by 44 nucleotides PfGW456L13_4411 - Putative two-component system sensor kinase, at 4,924,521 to 4,925,864 _4411 PfGW456L13_4412 - Nitroreductase family protein, at 4,925,886 to 4,926,452 _4412 PfGW456L13_4413 - Potassium uptake protein TrkH, at 4,926,574 to 4,928,028 _4413 PfGW456L13_4414 - Transcriptional regulator, AraC family, at 4,927,985 to 4,929,013 _4414 Position (kb) 4926 4927 4928 4929Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4925.670 kb on + strand, within PfGW456L13_4411at 4925.670 kb on + strand, within PfGW456L13_4411at 4925.670 kb on + strand, within PfGW456L13_4411at 4925.670 kb on + strand, within PfGW456L13_4411at 4925.671 kb on - strand, within PfGW456L13_4411at 4925.671 kb on - strand, within PfGW456L13_4411at 4925.671 kb on - strand, within PfGW456L13_4411at 4925.671 kb on - strand, within PfGW456L13_4411at 4925.671 kb on - strand, within PfGW456L13_4411at 4925.671 kb on - strand, within PfGW456L13_4411at 4925.671 kb on - strand, within PfGW456L13_4411at 4925.697 kb on + strand, within PfGW456L13_4411at 4925.851 kb on + strandat 4925.879 kb on + strandat 4925.879 kb on + strandat 4925.879 kb on + strandat 4925.971 kb on + strand, within PfGW456L13_4412at 4925.971 kb on + strand, within PfGW456L13_4412at 4926.035 kb on - strand, within PfGW456L13_4412at 4926.051 kb on - strand, within PfGW456L13_4412at 4926.080 kb on - strandat 4926.481 kb on + strandat 4926.482 kb on - strandat 4926.486 kb on + strandat 4926.486 kb on + strandat 4926.486 kb on + strandat 4926.487 kb on - strandat 4926.487 kb on - strandat 4926.487 kb on - strandat 4926.492 kb on + strandat 4926.492 kb on + strandat 4926.492 kb on + strandat 4926.492 kb on + strandat 4926.492 kb on + strandat 4926.492 kb on + strandat 4926.492 kb on + strandat 4926.492 kb on + strandat 4926.492 kb on + strandat 4926.492 kb on + strandat 4926.493 kb on - strandat 4926.493 kb on - strandat 4926.493 kb on - strandat 4926.493 kb on - strandat 4926.493 kb on - strandat 4926.493 kb on - strandat 4926.515 kb on + strandat 4926.516 kb on - strandat 4926.516 kb on - strandat 4926.516 kb on - strandat 4926.535 kb on + strandat 4926.536 kb on - strandat 4926.536 kb on - strandat 4926.536 kb on - strandat 4926.536 kb on - strandat 4926.556 kb on - strandat 4926.793 kb on + strand, within PfGW456L13_4413at 4926.793 kb on + strand, within PfGW456L13_4413at 4926.793 kb on + strand, within PfGW456L13_4413at 4926.793 kb on + strand, within PfGW456L13_4413at 4926.793 kb on + strand, within PfGW456L13_4413at 4926.793 kb on + strand, within PfGW456L13_4413at 4926.793 kb on + strand, within PfGW456L13_4413at 4926.793 kb on + strand, within PfGW456L13_4413at 4926.793 kb on + strand, within PfGW456L13_4413at 4926.793 kb on + strand, within PfGW456L13_4413at 4926.794 kb on - strand, within PfGW456L13_4413at 4926.794 kb on - strand, within PfGW456L13_4413at 4926.794 kb on - strand, within PfGW456L13_4413at 4926.794 kb on - strand, within PfGW456L13_4413at 4926.794 kb on - strand, within PfGW456L13_4413at 4926.794 kb on - strand, within PfGW456L13_4413at 4926.794 kb on - strand, within PfGW456L13_4413at 4926.794 kb on - strand, within PfGW456L13_4413at 4926.794 kb on - strand, within PfGW456L13_4413at 4926.794 kb on - strand, within PfGW456L13_4413at 4926.794 kb on - strand, within PfGW456L13_4413at 4926.794 kb on - strand, within PfGW456L13_4413at 4926.794 kb on - strand, within PfGW456L13_4413at 4926.794 kb on - strand, within PfGW456L13_4413at 4926.871 kb on + strand, within PfGW456L13_4413at 4926.872 kb on - strand, within PfGW456L13_4413at 4926.872 kb on - strand, within PfGW456L13_4413at 4927.138 kb on + strand, within PfGW456L13_4413at 4927.138 kb on + strand, within PfGW456L13_4413at 4927.339 kb on + strand, within PfGW456L13_4413at 4927.339 kb on + strand, within PfGW456L13_4413at 4927.339 kb on + strand, within PfGW456L13_4413at 4927.339 kb on + strand, within PfGW456L13_4413at 4927.339 kb on + strand, within PfGW456L13_4413at 4927.339 kb on + strand, within PfGW456L13_4413at 4927.340 kb on - strand, within PfGW456L13_4413at 4927.340 kb on - strand, within PfGW456L13_4413at 4927.444 kb on + strand, within PfGW456L13_4413at 4927.445 kb on - strand, within PfGW456L13_4413at 4927.445 kb on - strand, within PfGW456L13_4413at 4927.582 kb on + strand, within PfGW456L13_4413at 4927.654 kb on + strand, within PfGW456L13_4413at 4927.654 kb on + strand, within PfGW456L13_4413at 4927.654 kb on + strand, within PfGW456L13_4413at 4927.654 kb on + strand, within PfGW456L13_4413at 4927.654 kb on + strand, within PfGW456L13_4413at 4927.654 kb on + strand, within PfGW456L13_4413at 4927.654 kb on + strand, within PfGW456L13_4413at 4927.655 kb on - strand, within PfGW456L13_4413at 4927.655 kb on - strand, within PfGW456L13_4413at 4927.655 kb on - strand, within PfGW456L13_4413at 4927.655 kb on - strand, within PfGW456L13_4413at 4927.655 kb on - strand, within PfGW456L13_4413at 4927.655 kb on - strand, within PfGW456L13_4413at 4927.655 kb on - strand, within PfGW456L13_4413at 4927.655 kb on - strand, within PfGW456L13_4413at 4927.655 kb on - strand, within PfGW456L13_4413at 4927.677 kb on + strandat 4927.717 kb on + strand, within PfGW456L13_4413at 4927.718 kb on - strand, within PfGW456L13_4413at 4927.718 kb on - strand, within PfGW456L13_4413at 4928.004 kb on + strandat 4928.136 kb on + strand, within PfGW456L13_4414at 4928.136 kb on + strand, within PfGW456L13_4414at 4928.137 kb on - strand, within PfGW456L13_4414at 4928.137 kb on - strand, within PfGW456L13_4414at 4928.137 kb on - strand, within PfGW456L13_4414at 4928.137 kb on - strand, within PfGW456L13_4414at 4928.175 kb on + strand, within PfGW456L13_4414at 4928.227 kb on + strand, within PfGW456L13_4414at 4928.379 kb on + strand, within PfGW456L13_4414at 4928.380 kb on - strand, within PfGW456L13_4414at 4928.476 kb on - strand, within PfGW456L13_4414at 4928.515 kb on + strand, within PfGW456L13_4414at 4928.516 kb on - strand, within PfGW456L13_4414at 4928.516 kb on - strand, within PfGW456L13_4414at 4928.516 kb on - strand, within PfGW456L13_4414at 4928.517 kb on + strand, within PfGW456L13_4414at 4928.517 kb on + strand, within PfGW456L13_4414at 4928.517 kb on + strand, within PfGW456L13_4414at 4928.517 kb on + strand, within PfGW456L13_4414at 4928.518 kb on - strand, within PfGW456L13_4414at 4928.543 kb on - strand, within PfGW456L13_4414at 4928.575 kb on + strand, within PfGW456L13_4414at 4928.576 kb on - strand, within PfGW456L13_4414at 4928.576 kb on - strand, within PfGW456L13_4414at 4928.682 kb on + strand, within PfGW456L13_4414at 4928.739 kb on + strand, within PfGW456L13_4414

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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4,925,670 + PfGW456L13_4411 0.85 -2.4
4,925,670 + PfGW456L13_4411 0.85 -0.0
4,925,670 + PfGW456L13_4411 0.85 -0.1
4,925,670 + PfGW456L13_4411 0.85 +0.9
4,925,671 - PfGW456L13_4411 0.86 +0.1
4,925,671 - PfGW456L13_4411 0.86 -0.7
4,925,671 - PfGW456L13_4411 0.86 +1.1
4,925,671 - PfGW456L13_4411 0.86 +0.6
4,925,671 - PfGW456L13_4411 0.86 +1.2
4,925,671 - PfGW456L13_4411 0.86 +0.0
4,925,671 - PfGW456L13_4411 0.86 +2.2
4,925,697 + PfGW456L13_4411 0.88 +0.3
4,925,851 + -2.3
4,925,879 + +0.6
4,925,879 + +0.9
4,925,879 + +1.2
4,925,971 + PfGW456L13_4412 0.15 +1.5
4,925,971 + PfGW456L13_4412 0.15 -1.8
4,926,035 - PfGW456L13_4412 0.26 -0.3
4,926,051 - PfGW456L13_4412 0.29 +1.1
4,926,080 - +0.5
4,926,481 + +0.2
4,926,482 - +0.8
4,926,486 + +1.1
4,926,486 + -2.4
4,926,486 + +0.1
4,926,487 - +0.9
4,926,487 - -0.3
4,926,487 - +0.6
4,926,492 + +1.1
4,926,492 + -2.6
4,926,492 + -0.3
4,926,492 + +1.6
4,926,492 + +0.6
4,926,492 + -0.9
4,926,492 + +0.6
4,926,492 + +0.7
4,926,492 + -0.2
4,926,492 + +1.3
4,926,493 - -1.5
4,926,493 - +0.3
4,926,493 - -0.1
4,926,493 - -1.1
4,926,493 - -1.0
4,926,493 - +1.1
4,926,515 + -0.7
4,926,516 - -3.3
4,926,516 - -0.2
4,926,516 - -1.2
4,926,535 + +0.7
4,926,536 - -1.7
4,926,536 - +0.7
4,926,536 - +1.1
4,926,536 - -3.2
4,926,556 - +1.6
4,926,793 + PfGW456L13_4413 0.15 +2.7
4,926,793 + PfGW456L13_4413 0.15 +2.0
4,926,793 + PfGW456L13_4413 0.15 -1.7
4,926,793 + PfGW456L13_4413 0.15 -2.3
4,926,793 + PfGW456L13_4413 0.15 -0.4
4,926,793 + PfGW456L13_4413 0.15 +2.0
4,926,793 + PfGW456L13_4413 0.15 +1.0
4,926,793 + PfGW456L13_4413 0.15 +1.0
4,926,793 + PfGW456L13_4413 0.15 +0.7
4,926,793 + PfGW456L13_4413 0.15 -0.0
4,926,794 - PfGW456L13_4413 0.15 +0.8
4,926,794 - PfGW456L13_4413 0.15 +2.6
4,926,794 - PfGW456L13_4413 0.15 -1.5
4,926,794 - PfGW456L13_4413 0.15 -3.0
4,926,794 - PfGW456L13_4413 0.15 +0.4
4,926,794 - PfGW456L13_4413 0.15 +1.9
4,926,794 - PfGW456L13_4413 0.15 -1.7
4,926,794 - PfGW456L13_4413 0.15 -0.4
4,926,794 - PfGW456L13_4413 0.15 -3.2
4,926,794 - PfGW456L13_4413 0.15 -0.7
4,926,794 - PfGW456L13_4413 0.15 -2.6
4,926,794 - PfGW456L13_4413 0.15 +0.1
4,926,794 - PfGW456L13_4413 0.15 +0.4
4,926,794 - PfGW456L13_4413 0.15 +0.5
4,926,871 + PfGW456L13_4413 0.20 +2.4
4,926,872 - PfGW456L13_4413 0.20 -1.9
4,926,872 - PfGW456L13_4413 0.20 -0.1
4,927,138 + PfGW456L13_4413 0.39 +1.4
4,927,138 + PfGW456L13_4413 0.39 +2.9
4,927,339 + PfGW456L13_4413 0.53 +0.8
4,927,339 + PfGW456L13_4413 0.53 +0.1
4,927,339 + PfGW456L13_4413 0.53 +1.5
4,927,339 + PfGW456L13_4413 0.53 +0.7
4,927,339 + PfGW456L13_4413 0.53 -0.3
4,927,339 + PfGW456L13_4413 0.53 -3.2
4,927,340 - PfGW456L13_4413 0.53 -0.7
4,927,340 - PfGW456L13_4413 0.53 -1.2
4,927,444 + PfGW456L13_4413 0.60 -1.4
4,927,445 - PfGW456L13_4413 0.60 +1.0
4,927,445 - PfGW456L13_4413 0.60 +0.8
4,927,582 + PfGW456L13_4413 0.69 +0.3
4,927,654 + PfGW456L13_4413 0.74 +0.7
4,927,654 + PfGW456L13_4413 0.74 -2.1
4,927,654 + PfGW456L13_4413 0.74 +0.6
4,927,654 + PfGW456L13_4413 0.74 -0.3
4,927,654 + PfGW456L13_4413 0.74 +3.0
4,927,654 + PfGW456L13_4413 0.74 -0.5
4,927,654 + PfGW456L13_4413 0.74 -1.3
4,927,655 - PfGW456L13_4413 0.74 +1.5
4,927,655 - PfGW456L13_4413 0.74 -2.3
4,927,655 - PfGW456L13_4413 0.74 +0.3
4,927,655 - PfGW456L13_4413 0.74 -1.6
4,927,655 - PfGW456L13_4413 0.74 -2.4
4,927,655 - PfGW456L13_4413 0.74 -3.5
4,927,655 - PfGW456L13_4413 0.74 +2.6
4,927,655 - PfGW456L13_4413 0.74 +1.1
4,927,655 - PfGW456L13_4413 0.74 +0.4
4,927,677 + +2.3
4,927,717 + PfGW456L13_4413 0.79 +0.5
4,927,718 - PfGW456L13_4413 0.79 +1.2
4,927,718 - PfGW456L13_4413 0.79 +1.2
4,928,004 + -0.4
4,928,136 + PfGW456L13_4414 0.15 +2.4
4,928,136 + PfGW456L13_4414 0.15 +0.6
4,928,137 - PfGW456L13_4414 0.15 +0.5
4,928,137 - PfGW456L13_4414 0.15 +0.0
4,928,137 - PfGW456L13_4414 0.15 -1.6
4,928,137 - PfGW456L13_4414 0.15 -0.3
4,928,175 + PfGW456L13_4414 0.18 +0.9
4,928,227 + PfGW456L13_4414 0.24 -2.1
4,928,379 + PfGW456L13_4414 0.38 -3.0
4,928,380 - PfGW456L13_4414 0.38 -0.5
4,928,476 - PfGW456L13_4414 0.48 +0.1
4,928,515 + PfGW456L13_4414 0.52 -0.9
4,928,516 - PfGW456L13_4414 0.52 -0.2
4,928,516 - PfGW456L13_4414 0.52 -2.3
4,928,516 - PfGW456L13_4414 0.52 +0.8
4,928,517 + PfGW456L13_4414 0.52 -0.0
4,928,517 + PfGW456L13_4414 0.52 -2.6
4,928,517 + PfGW456L13_4414 0.52 -0.1
4,928,517 + PfGW456L13_4414 0.52 -0.1
4,928,518 - PfGW456L13_4414 0.52 +2.0
4,928,543 - PfGW456L13_4414 0.54 +0.8
4,928,575 + PfGW456L13_4414 0.57 -0.0
4,928,576 - PfGW456L13_4414 0.57 -1.7
4,928,576 - PfGW456L13_4414 0.57 -0.3
4,928,682 + PfGW456L13_4414 0.68 -0.8
4,928,739 + PfGW456L13_4414 0.73 -0.2

Or see this region's nucleotide sequence