Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2086

Experiment: Glycerol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_2084 and PfGW456L13_2085 overlap by 4 nucleotidesPfGW456L13_2085 and PfGW456L13_2086 overlap by 1 nucleotidesPfGW456L13_2086 and PfGW456L13_2087 are separated by 24 nucleotidesPfGW456L13_2087 and PfGW456L13_2088 overlap by 4 nucleotidesPfGW456L13_2088 and PfGW456L13_2089 overlap by 1 nucleotides PfGW456L13_2084 - MotA/TolQ/ExbB proton channel family protein, at 2,291,210 to 2,291,845 _2084 PfGW456L13_2085 - Biopolymer transport protein ExbD/TolR, at 2,291,842 to 2,292,270 _2085 PfGW456L13_2086 - Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130), at 2,292,270 to 2,293,280 _2086 PfGW456L13_2087 - FIG002473: Protein YcaR in KDO2-Lipid A biosynthesis cluster, at 2,293,305 to 2,293,490 _2087 PfGW456L13_2088 - 3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38), at 2,293,487 to 2,294,251 _2088 PfGW456L13_2089 - Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48), at 2,294,251 to 2,294,715 _2089 Position (kb) 2292 2293 2294Strain fitness (log2 ratio) -3 -2 -1 0 1at 2291.349 kb on + strand, within PfGW456L13_2084at 2291.662 kb on + strand, within PfGW456L13_2084at 2291.662 kb on + strand, within PfGW456L13_2084at 2291.718 kb on + strand, within PfGW456L13_2084at 2291.799 kb on + strandat 2291.799 kb on + strandat 2293.278 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
remove
2,291,349 + PfGW456L13_2084 0.22 -1.2
2,291,662 + PfGW456L13_2084 0.71 -2.8
2,291,662 + PfGW456L13_2084 0.71 -0.1
2,291,718 + PfGW456L13_2084 0.80 -1.8
2,291,799 + -1.2
2,291,799 + +1.3
2,293,278 + +0.1

Or see this region's nucleotide sequence