Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1807

Experiment: Glycerol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_1806 and PfGW456L13_1807 overlap by 7 nucleotidesPfGW456L13_1807 and PfGW456L13_1808 are separated by 228 nucleotides PfGW456L13_1806 - Nitrogen regulation protein NR(I), at 1,987,637 to 1,988,971 _1806 PfGW456L13_1807 - C4-dicarboxylate transport sensor protein, at 1,988,965 to 1,990,731 _1807 PfGW456L13_1808 - Fumarate hydratase class I, aerobic (EC 4.2.1.2), at 1,990,960 to 1,992,483 _1808 Position (kb) 1988 1989 1990 1991Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1988.006 kb on + strand, within PfGW456L13_1806at 1988.006 kb on + strand, within PfGW456L13_1806at 1988.007 kb on - strand, within PfGW456L13_1806at 1988.007 kb on - strand, within PfGW456L13_1806at 1988.007 kb on - strand, within PfGW456L13_1806at 1988.042 kb on + strand, within PfGW456L13_1806at 1988.042 kb on + strand, within PfGW456L13_1806at 1988.043 kb on - strand, within PfGW456L13_1806at 1988.043 kb on - strand, within PfGW456L13_1806at 1988.680 kb on - strand, within PfGW456L13_1806at 1988.714 kb on + strand, within PfGW456L13_1806at 1988.715 kb on - strand, within PfGW456L13_1806at 1988.715 kb on - strand, within PfGW456L13_1806at 1988.715 kb on - strand, within PfGW456L13_1806at 1989.079 kb on + strandat 1989.200 kb on - strand, within PfGW456L13_1807at 1989.200 kb on - strand, within PfGW456L13_1807at 1989.200 kb on - strand, within PfGW456L13_1807at 1989.527 kb on + strand, within PfGW456L13_1807at 1989.527 kb on + strand, within PfGW456L13_1807at 1989.527 kb on + strand, within PfGW456L13_1807at 1989.527 kb on + strand, within PfGW456L13_1807at 1989.527 kb on + strand, within PfGW456L13_1807at 1989.527 kb on + strand, within PfGW456L13_1807at 1989.527 kb on + strand, within PfGW456L13_1807at 1989.528 kb on - strand, within PfGW456L13_1807at 1989.528 kb on - strand, within PfGW456L13_1807at 1989.528 kb on - strand, within PfGW456L13_1807at 1989.528 kb on - strand, within PfGW456L13_1807at 1989.709 kb on + strand, within PfGW456L13_1807at 1989.709 kb on + strand, within PfGW456L13_1807at 1989.710 kb on - strand, within PfGW456L13_1807at 1989.892 kb on - strand, within PfGW456L13_1807at 1989.917 kb on + strand, within PfGW456L13_1807at 1989.918 kb on - strand, within PfGW456L13_1807at 1989.918 kb on - strand, within PfGW456L13_1807at 1990.111 kb on + strand, within PfGW456L13_1807at 1990.112 kb on - strand, within PfGW456L13_1807at 1990.247 kb on + strand, within PfGW456L13_1807at 1990.280 kb on + strand, within PfGW456L13_1807at 1990.280 kb on + strand, within PfGW456L13_1807at 1990.320 kb on - strand, within PfGW456L13_1807at 1990.320 kb on - strand, within PfGW456L13_1807at 1990.320 kb on - strand, within PfGW456L13_1807at 1990.334 kb on + strand, within PfGW456L13_1807at 1990.334 kb on + strand, within PfGW456L13_1807at 1990.334 kb on + strand, within PfGW456L13_1807at 1990.335 kb on - strand, within PfGW456L13_1807at 1990.349 kb on + strand, within PfGW456L13_1807at 1990.349 kb on + strand, within PfGW456L13_1807at 1990.349 kb on + strand, within PfGW456L13_1807at 1990.350 kb on - strand, within PfGW456L13_1807at 1990.350 kb on - strand, within PfGW456L13_1807at 1990.350 kb on - strand, within PfGW456L13_1807at 1990.350 kb on - strand, within PfGW456L13_1807at 1990.350 kb on - strand, within PfGW456L13_1807at 1990.350 kb on - strand, within PfGW456L13_1807at 1990.350 kb on - strand, within PfGW456L13_1807at 1990.350 kb on - strand, within PfGW456L13_1807at 1990.350 kb on - strand, within PfGW456L13_1807at 1990.564 kb on - strandat 1990.580 kb on + strandat 1990.580 kb on + strandat 1990.694 kb on + strandat 1990.694 kb on + strandat 1990.694 kb on + strandat 1990.694 kb on + strandat 1990.694 kb on + strandat 1990.694 kb on + strandat 1990.695 kb on - strandat 1990.695 kb on - strandat 1990.695 kb on - strandat 1990.695 kb on - strandat 1990.695 kb on - strandat 1990.695 kb on - strandat 1990.695 kb on - strandat 1990.695 kb on - strandat 1990.695 kb on - strandat 1990.695 kb on - strandat 1990.696 kb on + strandat 1990.696 kb on + strandat 1990.696 kb on + strandat 1990.696 kb on + strandat 1990.696 kb on + strandat 1990.740 kb on + strandat 1990.740 kb on + strandat 1990.741 kb on - strandat 1990.741 kb on - strandat 1990.741 kb on - strandat 1990.741 kb on - strandat 1990.751 kb on + strandat 1990.751 kb on + strandat 1990.769 kb on + strandat 1990.769 kb on + strandat 1990.770 kb on - strandat 1990.792 kb on + strandat 1990.792 kb on + strandat 1990.792 kb on + strandat 1990.793 kb on - strandat 1990.793 kb on - strandat 1990.793 kb on - strandat 1990.907 kb on + strandat 1990.961 kb on + strandat 1990.962 kb on - strandat 1990.972 kb on + strandat 1990.973 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
remove
1,988,006 + PfGW456L13_1806 0.28 +0.8
1,988,006 + PfGW456L13_1806 0.28 -1.0
1,988,007 - PfGW456L13_1806 0.28 -0.3
1,988,007 - PfGW456L13_1806 0.28 +0.0
1,988,007 - PfGW456L13_1806 0.28 +0.3
1,988,042 + PfGW456L13_1806 0.30 +0.1
1,988,042 + PfGW456L13_1806 0.30 -0.8
1,988,043 - PfGW456L13_1806 0.30 -3.3
1,988,043 - PfGW456L13_1806 0.30 -1.2
1,988,680 - PfGW456L13_1806 0.78 +0.1
1,988,714 + PfGW456L13_1806 0.81 +0.2
1,988,715 - PfGW456L13_1806 0.81 +0.1
1,988,715 - PfGW456L13_1806 0.81 +1.9
1,988,715 - PfGW456L13_1806 0.81 +0.1
1,989,079 + -3.0
1,989,200 - PfGW456L13_1807 0.13 +0.7
1,989,200 - PfGW456L13_1807 0.13 -0.5
1,989,200 - PfGW456L13_1807 0.13 -1.7
1,989,527 + PfGW456L13_1807 0.32 -0.3
1,989,527 + PfGW456L13_1807 0.32 -1.2
1,989,527 + PfGW456L13_1807 0.32 +0.8
1,989,527 + PfGW456L13_1807 0.32 -0.3
1,989,527 + PfGW456L13_1807 0.32 +0.2
1,989,527 + PfGW456L13_1807 0.32 +1.6
1,989,527 + PfGW456L13_1807 0.32 -0.5
1,989,528 - PfGW456L13_1807 0.32 +0.9
1,989,528 - PfGW456L13_1807 0.32 +1.1
1,989,528 - PfGW456L13_1807 0.32 -0.1
1,989,528 - PfGW456L13_1807 0.32 -3.8
1,989,709 + PfGW456L13_1807 0.42 -0.1
1,989,709 + PfGW456L13_1807 0.42 -0.2
1,989,710 - PfGW456L13_1807 0.42 -0.5
1,989,892 - PfGW456L13_1807 0.52 +1.5
1,989,917 + PfGW456L13_1807 0.54 -1.7
1,989,918 - PfGW456L13_1807 0.54 -1.0
1,989,918 - PfGW456L13_1807 0.54 +0.2
1,990,111 + PfGW456L13_1807 0.65 -0.4
1,990,112 - PfGW456L13_1807 0.65 -3.3
1,990,247 + PfGW456L13_1807 0.73 -0.8
1,990,280 + PfGW456L13_1807 0.74 +0.2
1,990,280 + PfGW456L13_1807 0.74 -1.0
1,990,320 - PfGW456L13_1807 0.77 -1.8
1,990,320 - PfGW456L13_1807 0.77 -0.2
1,990,320 - PfGW456L13_1807 0.77 +0.1
1,990,334 + PfGW456L13_1807 0.77 -0.8
1,990,334 + PfGW456L13_1807 0.77 +0.3
1,990,334 + PfGW456L13_1807 0.77 +0.6
1,990,335 - PfGW456L13_1807 0.78 +2.5
1,990,349 + PfGW456L13_1807 0.78 -1.5
1,990,349 + PfGW456L13_1807 0.78 -0.1
1,990,349 + PfGW456L13_1807 0.78 +1.0
1,990,350 - PfGW456L13_1807 0.78 +0.6
1,990,350 - PfGW456L13_1807 0.78 -3.1
1,990,350 - PfGW456L13_1807 0.78 +0.0
1,990,350 - PfGW456L13_1807 0.78 +1.7
1,990,350 - PfGW456L13_1807 0.78 -1.5
1,990,350 - PfGW456L13_1807 0.78 +1.7
1,990,350 - PfGW456L13_1807 0.78 +0.5
1,990,350 - PfGW456L13_1807 0.78 -2.2
1,990,350 - PfGW456L13_1807 0.78 -2.1
1,990,564 - +1.5
1,990,580 + +0.2
1,990,580 + +0.3
1,990,694 + -1.5
1,990,694 + -0.4
1,990,694 + +0.4
1,990,694 + +0.5
1,990,694 + +1.2
1,990,694 + +1.5
1,990,695 - -0.9
1,990,695 - -0.6
1,990,695 - -0.3
1,990,695 - -2.4
1,990,695 - -2.9
1,990,695 - +0.3
1,990,695 - +1.5
1,990,695 - +0.1
1,990,695 - +1.8
1,990,695 - +0.3
1,990,696 + -3.1
1,990,696 + +0.9
1,990,696 + -1.6
1,990,696 + +0.3
1,990,696 + +0.8
1,990,740 + -3.9
1,990,740 + +0.5
1,990,741 - -2.3
1,990,741 - +0.5
1,990,741 - +1.7
1,990,741 - +0.6
1,990,751 + -1.7
1,990,751 + +0.9
1,990,769 + -0.3
1,990,769 + -0.8
1,990,770 - -0.1
1,990,792 + -2.9
1,990,792 + +1.3
1,990,792 + +0.6
1,990,793 - +0.1
1,990,793 - +1.3
1,990,793 - +0.0
1,990,907 + -0.4
1,990,961 + -0.3
1,990,962 - -0.6
1,990,972 + -0.4
1,990,973 - +0.1

Or see this region's nucleotide sequence