Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1370

Experiment: Glycerol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_1369 and PfGW456L13_1370 are separated by 217 nucleotidesPfGW456L13_1370 and PfGW456L13_1371 are separated by 209 nucleotides PfGW456L13_1369 - Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-), at 1,513,396 to 1,514,562 _1369 PfGW456L13_1370 - FIG00957593: hypothetical protein, at 1,514,780 to 1,514,944 _1370 PfGW456L13_1371 - DNA polymerase III delta subunit (EC 2.7.7.7), at 1,515,154 to 1,516,191 _1371 Position (kb) 1514 1515Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1513.861 kb on + strand, within PfGW456L13_1369at 1513.861 kb on + strand, within PfGW456L13_1369at 1513.861 kb on + strand, within PfGW456L13_1369at 1513.861 kb on + strand, within PfGW456L13_1369at 1513.861 kb on + strand, within PfGW456L13_1369at 1513.862 kb on - strand, within PfGW456L13_1369at 1513.862 kb on - strand, within PfGW456L13_1369at 1513.862 kb on - strand, within PfGW456L13_1369at 1513.862 kb on - strand, within PfGW456L13_1369at 1513.862 kb on - strand, within PfGW456L13_1369at 1513.862 kb on - strand, within PfGW456L13_1369at 1513.865 kb on + strand, within PfGW456L13_1369at 1513.865 kb on + strand, within PfGW456L13_1369at 1513.865 kb on + strand, within PfGW456L13_1369at 1513.865 kb on + strand, within PfGW456L13_1369at 1513.865 kb on + strand, within PfGW456L13_1369at 1513.865 kb on + strand, within PfGW456L13_1369at 1513.865 kb on + strand, within PfGW456L13_1369at 1513.865 kb on + strand, within PfGW456L13_1369at 1513.865 kb on + strand, within PfGW456L13_1369at 1513.865 kb on + strand, within PfGW456L13_1369at 1513.865 kb on + strand, within PfGW456L13_1369at 1513.866 kb on - strand, within PfGW456L13_1369at 1513.866 kb on - strand, within PfGW456L13_1369at 1513.866 kb on - strand, within PfGW456L13_1369at 1513.866 kb on - strand, within PfGW456L13_1369at 1513.866 kb on - strand, within PfGW456L13_1369at 1513.866 kb on - strand, within PfGW456L13_1369at 1513.866 kb on - strand, within PfGW456L13_1369at 1513.937 kb on + strand, within PfGW456L13_1369at 1513.937 kb on + strand, within PfGW456L13_1369at 1513.938 kb on - strand, within PfGW456L13_1369at 1514.024 kb on + strand, within PfGW456L13_1369at 1514.024 kb on + strand, within PfGW456L13_1369at 1514.024 kb on + strand, within PfGW456L13_1369at 1514.024 kb on + strand, within PfGW456L13_1369at 1514.024 kb on + strand, within PfGW456L13_1369at 1514.024 kb on + strand, within PfGW456L13_1369at 1514.024 kb on + strand, within PfGW456L13_1369at 1514.024 kb on + strand, within PfGW456L13_1369at 1514.024 kb on + strand, within PfGW456L13_1369at 1514.024 kb on + strand, within PfGW456L13_1369at 1514.024 kb on + strand, within PfGW456L13_1369at 1514.025 kb on - strand, within PfGW456L13_1369at 1514.025 kb on - strand, within PfGW456L13_1369at 1514.025 kb on - strand, within PfGW456L13_1369at 1514.025 kb on - strand, within PfGW456L13_1369at 1514.025 kb on - strand, within PfGW456L13_1369at 1514.025 kb on - strand, within PfGW456L13_1369at 1514.025 kb on - strand, within PfGW456L13_1369at 1514.165 kb on + strand, within PfGW456L13_1369at 1514.166 kb on - strand, within PfGW456L13_1369at 1514.363 kb on + strand, within PfGW456L13_1369at 1514.364 kb on - strand, within PfGW456L13_1369at 1514.686 kb on + strandat 1514.686 kb on + strandat 1514.686 kb on + strandat 1514.686 kb on + strandat 1514.687 kb on - strandat 1514.687 kb on - strandat 1514.687 kb on - strandat 1514.687 kb on - strandat 1514.687 kb on - strandat 1514.735 kb on + strandat 1514.735 kb on + strandat 1514.746 kb on + strandat 1514.755 kb on + strandat 1514.756 kb on - strandat 1514.756 kb on - strandat 1514.796 kb on + strandat 1514.796 kb on + strandat 1514.797 kb on - strand, within PfGW456L13_1370at 1514.797 kb on - strand, within PfGW456L13_1370at 1514.797 kb on - strand, within PfGW456L13_1370at 1514.797 kb on - strand, within PfGW456L13_1370at 1514.839 kb on - strand, within PfGW456L13_1370at 1515.009 kb on + strandat 1515.009 kb on + strandat 1515.009 kb on + strandat 1515.010 kb on - strandat 1515.010 kb on - strandat 1515.010 kb on - strandat 1515.010 kb on - strandat 1515.018 kb on + strandat 1515.018 kb on + strandat 1515.018 kb on - strandat 1515.019 kb on - strandat 1515.019 kb on - strandat 1515.140 kb on + strandat 1515.141 kb on - strandat 1515.155 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
remove
1,513,861 + PfGW456L13_1369 0.40 -0.4
1,513,861 + PfGW456L13_1369 0.40 +0.7
1,513,861 + PfGW456L13_1369 0.40 +0.0
1,513,861 + PfGW456L13_1369 0.40 -0.2
1,513,861 + PfGW456L13_1369 0.40 +1.2
1,513,862 - PfGW456L13_1369 0.40 -0.2
1,513,862 - PfGW456L13_1369 0.40 +0.7
1,513,862 - PfGW456L13_1369 0.40 +0.1
1,513,862 - PfGW456L13_1369 0.40 +0.9
1,513,862 - PfGW456L13_1369 0.40 -0.0
1,513,862 - PfGW456L13_1369 0.40 -1.2
1,513,865 + PfGW456L13_1369 0.40 -0.7
1,513,865 + PfGW456L13_1369 0.40 -0.6
1,513,865 + PfGW456L13_1369 0.40 -0.1
1,513,865 + PfGW456L13_1369 0.40 -2.8
1,513,865 + PfGW456L13_1369 0.40 -0.6
1,513,865 + PfGW456L13_1369 0.40 +4.3
1,513,865 + PfGW456L13_1369 0.40 +1.1
1,513,865 + PfGW456L13_1369 0.40 -1.7
1,513,865 + PfGW456L13_1369 0.40 -0.1
1,513,865 + PfGW456L13_1369 0.40 -0.6
1,513,865 + PfGW456L13_1369 0.40 -3.0
1,513,866 - PfGW456L13_1369 0.40 -0.3
1,513,866 - PfGW456L13_1369 0.40 -1.2
1,513,866 - PfGW456L13_1369 0.40 +0.5
1,513,866 - PfGW456L13_1369 0.40 -0.1
1,513,866 - PfGW456L13_1369 0.40 +0.2
1,513,866 - PfGW456L13_1369 0.40 -0.1
1,513,866 - PfGW456L13_1369 0.40 +0.3
1,513,937 + PfGW456L13_1369 0.46 +2.8
1,513,937 + PfGW456L13_1369 0.46 -0.2
1,513,938 - PfGW456L13_1369 0.46 +0.6
1,514,024 + PfGW456L13_1369 0.54 +0.3
1,514,024 + PfGW456L13_1369 0.54 -0.2
1,514,024 + PfGW456L13_1369 0.54 -1.3
1,514,024 + PfGW456L13_1369 0.54 -3.1
1,514,024 + PfGW456L13_1369 0.54 +1.2
1,514,024 + PfGW456L13_1369 0.54 -2.6
1,514,024 + PfGW456L13_1369 0.54 -0.7
1,514,024 + PfGW456L13_1369 0.54 -1.3
1,514,024 + PfGW456L13_1369 0.54 -2.8
1,514,024 + PfGW456L13_1369 0.54 -3.3
1,514,024 + PfGW456L13_1369 0.54 +1.2
1,514,025 - PfGW456L13_1369 0.54 +1.7
1,514,025 - PfGW456L13_1369 0.54 -2.5
1,514,025 - PfGW456L13_1369 0.54 -1.5
1,514,025 - PfGW456L13_1369 0.54 -3.9
1,514,025 - PfGW456L13_1369 0.54 +0.3
1,514,025 - PfGW456L13_1369 0.54 -0.6
1,514,025 - PfGW456L13_1369 0.54 +0.7
1,514,165 + PfGW456L13_1369 0.66 -2.8
1,514,166 - PfGW456L13_1369 0.66 -1.5
1,514,363 + PfGW456L13_1369 0.83 +0.8
1,514,364 - PfGW456L13_1369 0.83 +0.1
1,514,686 + +1.0
1,514,686 + -2.1
1,514,686 + -0.8
1,514,686 + -0.1
1,514,687 - -0.8
1,514,687 - -0.2
1,514,687 - -1.5
1,514,687 - -0.8
1,514,687 - +1.8
1,514,735 + +0.2
1,514,735 + -2.3
1,514,746 + +1.0
1,514,755 + +2.7
1,514,756 - -1.0
1,514,756 - -2.3
1,514,796 + +0.3
1,514,796 + +1.2
1,514,797 - PfGW456L13_1370 0.10 -2.2
1,514,797 - PfGW456L13_1370 0.10 -1.1
1,514,797 - PfGW456L13_1370 0.10 -0.5
1,514,797 - PfGW456L13_1370 0.10 -1.5
1,514,839 - PfGW456L13_1370 0.36 -1.1
1,515,009 + -3.4
1,515,009 + -2.8
1,515,009 + +0.5
1,515,010 - +2.3
1,515,010 - -2.0
1,515,010 - +0.1
1,515,010 - +0.1
1,515,018 + +0.1
1,515,018 + -1.6
1,515,018 - +1.0
1,515,019 - -3.6
1,515,019 - +0.4
1,515,140 + +0.1
1,515,141 - -2.4
1,515,155 + +0.6

Or see this region's nucleotide sequence