Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1148

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1147 and PfGW456L13_1148 are separated by 174 nucleotidesPfGW456L13_1148 and PfGW456L13_1149 overlap by 8 nucleotidesPfGW456L13_1149 and PfGW456L13_1150 overlap by 8 nucleotides PfGW456L13_1147 - Biotin synthase (EC 2.8.1.6), at 1,275,427 to 1,276,482 _1147 PfGW456L13_1148 - 8-amino-7-oxononanoate synthase (EC 2.3.1.47), at 1,276,657 to 1,277,835 _1148 PfGW456L13_1149 - Biotin synthesis protein BioH, at 1,277,828 to 1,278,559 _1149 PfGW456L13_1150 - Biotin synthesis protein BioC, at 1,278,552 to 1,279,364 _1150 Position (kb) 1276 1277 1278Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1275.779 kb on - strand, within PfGW456L13_1147at 1275.779 kb on - strand, within PfGW456L13_1147at 1275.889 kb on + strand, within PfGW456L13_1147at 1275.889 kb on + strand, within PfGW456L13_1147at 1275.889 kb on + strand, within PfGW456L13_1147at 1275.890 kb on - strand, within PfGW456L13_1147at 1275.890 kb on - strand, within PfGW456L13_1147at 1275.890 kb on - strand, within PfGW456L13_1147at 1275.892 kb on + strand, within PfGW456L13_1147at 1275.892 kb on + strand, within PfGW456L13_1147at 1275.892 kb on + strand, within PfGW456L13_1147at 1275.892 kb on + strand, within PfGW456L13_1147at 1275.892 kb on + strand, within PfGW456L13_1147at 1275.892 kb on + strand, within PfGW456L13_1147at 1275.892 kb on + strand, within PfGW456L13_1147at 1275.892 kb on + strand, within PfGW456L13_1147at 1275.892 kb on + strand, within PfGW456L13_1147at 1275.892 kb on + strand, within PfGW456L13_1147at 1275.892 kb on + strand, within PfGW456L13_1147at 1275.892 kb on + strand, within PfGW456L13_1147at 1275.892 kb on + strand, within PfGW456L13_1147at 1275.892 kb on + strand, within PfGW456L13_1147at 1275.892 kb on + strand, within PfGW456L13_1147at 1275.892 kb on + strand, within PfGW456L13_1147at 1275.893 kb on - strand, within PfGW456L13_1147at 1275.893 kb on - strand, within PfGW456L13_1147at 1275.893 kb on - strand, within PfGW456L13_1147at 1275.893 kb on - strand, within PfGW456L13_1147at 1275.893 kb on - strand, within PfGW456L13_1147at 1275.893 kb on - strand, within PfGW456L13_1147at 1275.893 kb on - strand, within PfGW456L13_1147at 1275.909 kb on + strand, within PfGW456L13_1147at 1275.909 kb on + strand, within PfGW456L13_1147at 1275.925 kb on + strand, within PfGW456L13_1147at 1275.926 kb on - strand, within PfGW456L13_1147at 1275.926 kb on - strand, within PfGW456L13_1147at 1275.952 kb on + strand, within PfGW456L13_1147at 1275.952 kb on + strand, within PfGW456L13_1147at 1275.953 kb on - strand, within PfGW456L13_1147at 1275.953 kb on - strand, within PfGW456L13_1147at 1275.953 kb on - strand, within PfGW456L13_1147at 1275.979 kb on + strand, within PfGW456L13_1147at 1275.980 kb on - strand, within PfGW456L13_1147at 1275.980 kb on - strand, within PfGW456L13_1147at 1275.980 kb on - strand, within PfGW456L13_1147at 1275.980 kb on - strand, within PfGW456L13_1147at 1276.422 kb on + strandat 1276.423 kb on - strandat 1276.423 kb on - strandat 1276.423 kb on - strandat 1276.465 kb on + strandat 1276.465 kb on + strandat 1276.786 kb on - strand, within PfGW456L13_1148at 1276.795 kb on + strand, within PfGW456L13_1148at 1276.795 kb on + strand, within PfGW456L13_1148at 1276.796 kb on - strand, within PfGW456L13_1148at 1276.796 kb on - strand, within PfGW456L13_1148at 1276.896 kb on + strand, within PfGW456L13_1148at 1276.896 kb on + strand, within PfGW456L13_1148at 1276.896 kb on + strand, within PfGW456L13_1148at 1276.896 kb on + strand, within PfGW456L13_1148at 1276.896 kb on + strand, within PfGW456L13_1148at 1276.896 kb on + strand, within PfGW456L13_1148at 1276.897 kb on - strand, within PfGW456L13_1148at 1276.897 kb on - strand, within PfGW456L13_1148at 1276.897 kb on - strand, within PfGW456L13_1148at 1276.897 kb on - strand, within PfGW456L13_1148at 1276.897 kb on - strand, within PfGW456L13_1148at 1276.975 kb on + strand, within PfGW456L13_1148at 1276.976 kb on - strand, within PfGW456L13_1148at 1276.976 kb on - strand, within PfGW456L13_1148at 1276.976 kb on - strand, within PfGW456L13_1148at 1276.976 kb on - strand, within PfGW456L13_1148at 1276.976 kb on - strand, within PfGW456L13_1148at 1277.022 kb on + strand, within PfGW456L13_1148at 1277.022 kb on + strand, within PfGW456L13_1148at 1277.098 kb on + strand, within PfGW456L13_1148at 1277.099 kb on - strand, within PfGW456L13_1148at 1277.154 kb on + strand, within PfGW456L13_1148at 1277.154 kb on + strand, within PfGW456L13_1148at 1277.154 kb on + strand, within PfGW456L13_1148at 1277.154 kb on + strand, within PfGW456L13_1148at 1277.154 kb on + strand, within PfGW456L13_1148at 1277.155 kb on - strand, within PfGW456L13_1148at 1277.155 kb on - strand, within PfGW456L13_1148at 1277.440 kb on + strand, within PfGW456L13_1148at 1277.440 kb on + strand, within PfGW456L13_1148at 1277.440 kb on + strand, within PfGW456L13_1148at 1277.440 kb on + strand, within PfGW456L13_1148at 1277.441 kb on - strand, within PfGW456L13_1148at 1277.441 kb on - strand, within PfGW456L13_1148at 1277.441 kb on - strand, within PfGW456L13_1148at 1277.441 kb on - strand, within PfGW456L13_1148at 1277.441 kb on - strand, within PfGW456L13_1148at 1277.446 kb on + strand, within PfGW456L13_1148at 1277.446 kb on + strand, within PfGW456L13_1148at 1277.446 kb on + strand, within PfGW456L13_1148at 1277.446 kb on + strand, within PfGW456L13_1148at 1277.446 kb on + strand, within PfGW456L13_1148at 1277.446 kb on + strand, within PfGW456L13_1148at 1277.446 kb on + strand, within PfGW456L13_1148at 1277.446 kb on + strand, within PfGW456L13_1148at 1277.446 kb on + strand, within PfGW456L13_1148at 1277.446 kb on + strand, within PfGW456L13_1148at 1277.446 kb on + strand, within PfGW456L13_1148at 1277.447 kb on - strand, within PfGW456L13_1148at 1277.447 kb on - strand, within PfGW456L13_1148at 1277.447 kb on - strand, within PfGW456L13_1148at 1277.447 kb on - strand, within PfGW456L13_1148at 1277.447 kb on - strand, within PfGW456L13_1148at 1277.447 kb on - strand, within PfGW456L13_1148at 1277.447 kb on - strand, within PfGW456L13_1148at 1277.447 kb on - strand, within PfGW456L13_1148at 1277.447 kb on - strand, within PfGW456L13_1148at 1277.447 kb on - strand, within PfGW456L13_1148at 1277.447 kb on - strand, within PfGW456L13_1148at 1277.447 kb on - strand, within PfGW456L13_1148at 1277.447 kb on - strand, within PfGW456L13_1148at 1277.447 kb on - strand, within PfGW456L13_1148at 1277.447 kb on - strand, within PfGW456L13_1148at 1277.447 kb on - strand, within PfGW456L13_1148at 1277.447 kb on - strand, within PfGW456L13_1148at 1277.447 kb on - strand, within PfGW456L13_1148at 1277.768 kb on + strandat 1277.768 kb on + strandat 1277.768 kb on + strandat 1277.768 kb on + strandat 1277.768 kb on + strandat 1277.768 kb on + strandat 1277.769 kb on - strandat 1277.769 kb on - strandat 1277.774 kb on + strandat 1277.774 kb on + strandat 1277.774 kb on + strandat 1277.774 kb on + strandat 1277.774 kb on + strandat 1277.774 kb on + strandat 1277.774 kb on + strandat 1277.774 kb on + strandat 1277.774 kb on + strandat 1277.775 kb on - strandat 1277.775 kb on - strandat 1277.775 kb on - strandat 1277.775 kb on - strandat 1277.775 kb on - strandat 1277.775 kb on - strandat 1277.775 kb on - strandat 1277.775 kb on - strandat 1277.775 kb on - strandat 1277.775 kb on - strandat 1278.562 kb on + strandat 1278.562 kb on + strandat 1278.563 kb on - strandat 1278.563 kb on - strandat 1278.607 kb on + strandat 1278.607 kb on + strandat 1278.608 kb on - strandat 1278.639 kb on + strand, within PfGW456L13_1150at 1278.639 kb on + strand, within PfGW456L13_1150at 1278.639 kb on + strand, within PfGW456L13_1150at 1278.640 kb on - strand, within PfGW456L13_1150at 1278.640 kb on - strand, within PfGW456L13_1150at 1278.640 kb on - strand, within PfGW456L13_1150at 1278.640 kb on - strand, within PfGW456L13_1150

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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1,275,779 - PfGW456L13_1147 0.33 -2.2
1,275,779 - PfGW456L13_1147 0.33 -3.5
1,275,889 + PfGW456L13_1147 0.44 -3.0
1,275,889 + PfGW456L13_1147 0.44 -3.1
1,275,889 + PfGW456L13_1147 0.44 -3.9
1,275,890 - PfGW456L13_1147 0.44 -1.4
1,275,890 - PfGW456L13_1147 0.44 -2.0
1,275,890 - PfGW456L13_1147 0.44 -2.9
1,275,892 + PfGW456L13_1147 0.44 -2.8
1,275,892 + PfGW456L13_1147 0.44 -3.0
1,275,892 + PfGW456L13_1147 0.44 -3.1
1,275,892 + PfGW456L13_1147 0.44 -2.0
1,275,892 + PfGW456L13_1147 0.44 -3.5
1,275,892 + PfGW456L13_1147 0.44 -4.7
1,275,892 + PfGW456L13_1147 0.44 -2.8
1,275,892 + PfGW456L13_1147 0.44 -4.2
1,275,892 + PfGW456L13_1147 0.44 -3.0
1,275,892 + PfGW456L13_1147 0.44 -3.3
1,275,892 + PfGW456L13_1147 0.44 -5.1
1,275,892 + PfGW456L13_1147 0.44 -3.1
1,275,892 + PfGW456L13_1147 0.44 -2.4
1,275,892 + PfGW456L13_1147 0.44 -0.4
1,275,892 + PfGW456L13_1147 0.44 -2.4
1,275,892 + PfGW456L13_1147 0.44 -3.2
1,275,893 - PfGW456L13_1147 0.44 -1.4
1,275,893 - PfGW456L13_1147 0.44 -2.4
1,275,893 - PfGW456L13_1147 0.44 -1.8
1,275,893 - PfGW456L13_1147 0.44 -1.8
1,275,893 - PfGW456L13_1147 0.44 -2.8
1,275,893 - PfGW456L13_1147 0.44 -3.6
1,275,893 - PfGW456L13_1147 0.44 -3.6
1,275,909 + PfGW456L13_1147 0.46 -0.7
1,275,909 + PfGW456L13_1147 0.46 -3.9
1,275,925 + PfGW456L13_1147 0.47 -3.5
1,275,926 - PfGW456L13_1147 0.47 -3.3
1,275,926 - PfGW456L13_1147 0.47 -3.8
1,275,952 + PfGW456L13_1147 0.50 -2.5
1,275,952 + PfGW456L13_1147 0.50 -2.6
1,275,953 - PfGW456L13_1147 0.50 -2.1
1,275,953 - PfGW456L13_1147 0.50 -3.1
1,275,953 - PfGW456L13_1147 0.50 -1.7
1,275,979 + PfGW456L13_1147 0.52 -3.7
1,275,980 - PfGW456L13_1147 0.52 -1.2
1,275,980 - PfGW456L13_1147 0.52 -1.0
1,275,980 - PfGW456L13_1147 0.52 -0.4
1,275,980 - PfGW456L13_1147 0.52 -3.1
1,276,422 + +0.2
1,276,423 - -2.0
1,276,423 - -3.7
1,276,423 - -2.7
1,276,465 + +0.5
1,276,465 + +0.0
1,276,786 - PfGW456L13_1148 0.11 -2.3
1,276,795 + PfGW456L13_1148 0.12 -3.5
1,276,795 + PfGW456L13_1148 0.12 -0.3
1,276,796 - PfGW456L13_1148 0.12 -3.0
1,276,796 - PfGW456L13_1148 0.12 -1.3
1,276,896 + PfGW456L13_1148 0.20 -2.5
1,276,896 + PfGW456L13_1148 0.20 -1.7
1,276,896 + PfGW456L13_1148 0.20 -3.4
1,276,896 + PfGW456L13_1148 0.20 -2.3
1,276,896 + PfGW456L13_1148 0.20 -4.6
1,276,896 + PfGW456L13_1148 0.20 -4.2
1,276,897 - PfGW456L13_1148 0.20 -2.5
1,276,897 - PfGW456L13_1148 0.20 -1.7
1,276,897 - PfGW456L13_1148 0.20 -2.9
1,276,897 - PfGW456L13_1148 0.20 -1.0
1,276,897 - PfGW456L13_1148 0.20 -3.6
1,276,975 + PfGW456L13_1148 0.27 -2.5
1,276,976 - PfGW456L13_1148 0.27 -3.7
1,276,976 - PfGW456L13_1148 0.27 -2.7
1,276,976 - PfGW456L13_1148 0.27 -3.8
1,276,976 - PfGW456L13_1148 0.27 -3.4
1,276,976 - PfGW456L13_1148 0.27 -2.3
1,277,022 + PfGW456L13_1148 0.31 -3.5
1,277,022 + PfGW456L13_1148 0.31 -1.3
1,277,098 + PfGW456L13_1148 0.37 -0.7
1,277,099 - PfGW456L13_1148 0.37 -3.3
1,277,154 + PfGW456L13_1148 0.42 -2.7
1,277,154 + PfGW456L13_1148 0.42 -3.2
1,277,154 + PfGW456L13_1148 0.42 -3.4
1,277,154 + PfGW456L13_1148 0.42 -1.8
1,277,154 + PfGW456L13_1148 0.42 -0.4
1,277,155 - PfGW456L13_1148 0.42 -4.3
1,277,155 - PfGW456L13_1148 0.42 -2.1
1,277,440 + PfGW456L13_1148 0.66 -2.8
1,277,440 + PfGW456L13_1148 0.66 -2.8
1,277,440 + PfGW456L13_1148 0.66 -2.2
1,277,440 + PfGW456L13_1148 0.66 -2.5
1,277,441 - PfGW456L13_1148 0.66 -1.7
1,277,441 - PfGW456L13_1148 0.66 -3.6
1,277,441 - PfGW456L13_1148 0.66 -2.1
1,277,441 - PfGW456L13_1148 0.66 -2.6
1,277,441 - PfGW456L13_1148 0.66 -3.3
1,277,446 + PfGW456L13_1148 0.67 -3.5
1,277,446 + PfGW456L13_1148 0.67 -0.8
1,277,446 + PfGW456L13_1148 0.67 -3.0
1,277,446 + PfGW456L13_1148 0.67 -4.9
1,277,446 + PfGW456L13_1148 0.67 -2.6
1,277,446 + PfGW456L13_1148 0.67 -3.9
1,277,446 + PfGW456L13_1148 0.67 -1.7
1,277,446 + PfGW456L13_1148 0.67 -3.6
1,277,446 + PfGW456L13_1148 0.67 -2.2
1,277,446 + PfGW456L13_1148 0.67 -4.2
1,277,446 + PfGW456L13_1148 0.67 -3.8
1,277,447 - PfGW456L13_1148 0.67 -2.6
1,277,447 - PfGW456L13_1148 0.67 -3.8
1,277,447 - PfGW456L13_1148 0.67 -3.2
1,277,447 - PfGW456L13_1148 0.67 -2.1
1,277,447 - PfGW456L13_1148 0.67 -2.0
1,277,447 - PfGW456L13_1148 0.67 -3.2
1,277,447 - PfGW456L13_1148 0.67 -2.6
1,277,447 - PfGW456L13_1148 0.67 -1.4
1,277,447 - PfGW456L13_1148 0.67 -3.4
1,277,447 - PfGW456L13_1148 0.67 -2.0
1,277,447 - PfGW456L13_1148 0.67 -3.9
1,277,447 - PfGW456L13_1148 0.67 -3.8
1,277,447 - PfGW456L13_1148 0.67 -1.7
1,277,447 - PfGW456L13_1148 0.67 -3.2
1,277,447 - PfGW456L13_1148 0.67 -2.0
1,277,447 - PfGW456L13_1148 0.67 -3.0
1,277,447 - PfGW456L13_1148 0.67 -1.7
1,277,447 - PfGW456L13_1148 0.67 -2.4
1,277,768 + -2.9
1,277,768 + -3.6
1,277,768 + -1.8
1,277,768 + +0.6
1,277,768 + -3.8
1,277,768 + -2.0
1,277,769 - -2.8
1,277,769 - -2.8
1,277,774 + -3.1
1,277,774 + -4.5
1,277,774 + -3.0
1,277,774 + -3.1
1,277,774 + -3.8
1,277,774 + -3.8
1,277,774 + -3.5
1,277,774 + -3.9
1,277,774 + -2.8
1,277,775 - -2.2
1,277,775 - -4.1
1,277,775 - -2.6
1,277,775 - -1.5
1,277,775 - -2.6
1,277,775 - -2.1
1,277,775 - -3.8
1,277,775 - -3.8
1,277,775 - -3.5
1,277,775 - -1.4
1,278,562 + -2.8
1,278,562 + -2.6
1,278,563 - -3.7
1,278,563 - -3.3
1,278,607 + -3.4
1,278,607 + -1.2
1,278,608 - -3.0
1,278,639 + PfGW456L13_1150 0.11 -1.2
1,278,639 + PfGW456L13_1150 0.11 -2.5
1,278,639 + PfGW456L13_1150 0.11 -1.2
1,278,640 - PfGW456L13_1150 0.11 -3.0
1,278,640 - PfGW456L13_1150 0.11 -2.5
1,278,640 - PfGW456L13_1150 0.11 -2.4
1,278,640 - PfGW456L13_1150 0.11 -3.5

Or see this region's nucleotide sequence