Experiment: D-Fructose carbon 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_03037 and PFR28_03038 are separated by 83 nucleotides PFR28_03038 and PFR28_03039 are separated by 505 nucleotides PFR28_03039 and PFR28_03040 are separated by 56 nucleotides PFR28_03040 and PFR28_03041 are separated by 21 nucleotides
PFR28_03037: PFR28_03037 - Acyl-coenzyme A dehydrogenase, at 3,538,773 to 3,541,220
_03037
PFR28_03038: PFR28_03038 - hypothetical protein, at 3,541,304 to 3,541,711
_03038
PFR28_03039: PFR28_03039 - Type 3 secretion system secretin, at 3,542,217 to 3,543,440
_03039
PFR28_03040: PFR28_03040 - hypothetical protein, at 3,543,497 to 3,544,207
_03040
PFR28_03041: PFR28_03041 - hypothetical protein, at 3,544,229 to 3,544,498
_03041
Position (kb) 3542
3543
3544 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 3541.244 kb on + strand at 3541.244 kb on + strand at 3541.245 kb on - strand at 3541.265 kb on + strand at 3541.265 kb on + strand at 3541.266 kb on - strand at 3541.266 kb on - strand at 3541.266 kb on - strand at 3541.267 kb on + strand at 3541.267 kb on + strand at 3541.268 kb on - strand at 3541.268 kb on - strand at 3541.268 kb on - strand at 3541.268 kb on - strand at 3541.268 kb on - strand at 3541.268 kb on - strand at 3541.298 kb on + strand at 3541.298 kb on + strand at 3541.298 kb on + strand at 3541.298 kb on + strand at 3541.299 kb on - strand at 3541.299 kb on - strand at 3541.299 kb on - strand at 3541.299 kb on - strand at 3541.299 kb on - strand at 3541.299 kb on - strand at 3541.470 kb on - strand, within PFR28_03038 at 3541.470 kb on - strand, within PFR28_03038 at 3541.470 kb on - strand, within PFR28_03038 at 3541.503 kb on + strand, within PFR28_03038 at 3541.503 kb on + strand, within PFR28_03038 at 3541.503 kb on + strand, within PFR28_03038 at 3541.503 kb on + strand, within PFR28_03038 at 3541.503 kb on + strand, within PFR28_03038 at 3541.503 kb on + strand, within PFR28_03038 at 3541.503 kb on + strand, within PFR28_03038 at 3541.503 kb on + strand, within PFR28_03038 at 3541.503 kb on + strand, within PFR28_03038 at 3541.503 kb on + strand, within PFR28_03038 at 3541.503 kb on + strand, within PFR28_03038 at 3541.503 kb on + strand, within PFR28_03038 at 3541.503 kb on + strand, within PFR28_03038 at 3541.503 kb on + strand, within PFR28_03038 at 3541.504 kb on - strand, within PFR28_03038 at 3541.504 kb on - strand, within PFR28_03038 at 3541.504 kb on - strand, within PFR28_03038 at 3541.504 kb on - strand, within PFR28_03038 at 3541.504 kb on - strand, within PFR28_03038 at 3541.504 kb on - strand, within PFR28_03038 at 3541.504 kb on - strand, within PFR28_03038 at 3541.504 kb on - strand, within PFR28_03038 at 3541.504 kb on - strand, within PFR28_03038 at 3541.504 kb on - strand, within PFR28_03038 at 3541.504 kb on - strand, within PFR28_03038 at 3541.504 kb on - strand, within PFR28_03038 at 3541.504 kb on - strand, within PFR28_03038 at 3541.504 kb on - strand, within PFR28_03038 at 3541.530 kb on + strand, within PFR28_03038 at 3541.530 kb on + strand, within PFR28_03038 at 3541.530 kb on + strand, within PFR28_03038 at 3541.531 kb on - strand, within PFR28_03038 at 3541.531 kb on - strand, within PFR28_03038 at 3541.551 kb on - strand, within PFR28_03038 at 3541.574 kb on + strand, within PFR28_03038 at 3541.574 kb on + strand, within PFR28_03038 at 3541.574 kb on + strand, within PFR28_03038 at 3541.574 kb on + strand, within PFR28_03038 at 3541.574 kb on + strand, within PFR28_03038 at 3541.574 kb on + strand, within PFR28_03038 at 3541.574 kb on + strand, within PFR28_03038 at 3541.574 kb on + strand, within PFR28_03038 at 3541.574 kb on + strand, within PFR28_03038 at 3541.575 kb on - strand, within PFR28_03038 at 3541.575 kb on - strand, within PFR28_03038 at 3541.575 kb on - strand, within PFR28_03038 at 3541.575 kb on - strand, within PFR28_03038 at 3541.575 kb on - strand, within PFR28_03038 at 3541.575 kb on - strand, within PFR28_03038 at 3541.575 kb on - strand, within PFR28_03038 at 3541.575 kb on - strand, within PFR28_03038 at 3541.575 kb on - strand, within PFR28_03038 at 3541.575 kb on - strand, within PFR28_03038 at 3541.601 kb on + strand, within PFR28_03038 at 3541.763 kb on + strand at 3541.764 kb on - strand at 3541.928 kb on + strand at 3541.929 kb on - strand at 3541.929 kb on - strand at 3541.929 kb on - strand at 3541.929 kb on - strand at 3541.937 kb on + strand at 3541.937 kb on + strand at 3541.937 kb on + strand at 3541.938 kb on - strand at 3542.159 kb on + strand at 3542.160 kb on - strand at 3542.160 kb on - strand at 3542.160 kb on - strand at 3542.186 kb on + strand at 3542.186 kb on + strand at 3542.216 kb on + strand at 3542.216 kb on + strand at 3542.216 kb on + strand at 3542.216 kb on + strand at 3542.217 kb on - strand at 3542.217 kb on - strand at 3542.217 kb on - strand at 3542.223 kb on + strand at 3542.223 kb on + strand at 3542.240 kb on + strand at 3542.242 kb on + strand at 3542.243 kb on - strand at 3542.243 kb on - strand at 3542.253 kb on - strand at 3542.847 kb on + strand, within PFR28_03039 at 3542.847 kb on + strand, within PFR28_03039 at 3542.847 kb on + strand, within PFR28_03039 at 3542.847 kb on + strand, within PFR28_03039 at 3542.848 kb on - strand, within PFR28_03039 at 3542.848 kb on - strand, within PFR28_03039 at 3542.848 kb on - strand, within PFR28_03039 at 3542.848 kb on - strand, within PFR28_03039 at 3542.964 kb on + strand, within PFR28_03039 at 3542.965 kb on - strand, within PFR28_03039 at 3542.965 kb on - strand, within PFR28_03039 at 3542.965 kb on - strand, within PFR28_03039 at 3542.965 kb on - strand, within PFR28_03039 at 3543.366 kb on + strand at 3543.366 kb on + strand at 3543.366 kb on + strand at 3543.366 kb on + strand at 3543.367 kb on - strand at 3543.391 kb on - strand at 3543.391 kb on - strand at 3543.391 kb on - strand at 3543.391 kb on - strand at 3543.391 kb on - strand at 3543.650 kb on + strand, within PFR28_03040 at 3543.651 kb on - strand, within PFR28_03040 at 3543.651 kb on - strand, within PFR28_03040 at 3543.758 kb on + strand, within PFR28_03040 at 3543.759 kb on - strand, within PFR28_03040 at 3543.759 kb on - strand, within PFR28_03040 at 3543.759 kb on - strand, within PFR28_03040 at 3543.759 kb on - strand, within PFR28_03040 at 3543.920 kb on + strand, within PFR28_03040 at 3543.921 kb on - strand, within PFR28_03040 at 3544.029 kb on - strand, within PFR28_03040 at 3544.177 kb on - strand at 3544.205 kb on + strand at 3544.205 kb on + strand at 3544.205 kb on + strand at 3544.205 kb on + strand at 3544.206 kb on - strand at 3544.206 kb on - strand at 3544.206 kb on - strand at 3544.206 kb on - strand at 3544.206 kb on - strand at 3544.344 kb on + strand, within PFR28_03041 at 3544.345 kb on - strand, within PFR28_03041 at 3544.429 kb on + strand, within PFR28_03041 at 3544.430 kb on - strand, within PFR28_03041 at 3544.430 kb on - strand, within PFR28_03041 at 3544.430 kb on - strand, within PFR28_03041 at 3544.439 kb on + strand, within PFR28_03041
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose carbon 10 mM remove 3,541,244 + -1.1 3,541,244 + -0.3 3,541,245 - -0.8 3,541,265 + -0.6 3,541,265 + -1.6 3,541,266 - +0.5 3,541,266 - -0.3 3,541,266 - +0.9 3,541,267 + -0.3 3,541,267 + +0.2 3,541,268 - -0.2 3,541,268 - +0.3 3,541,268 - -0.7 3,541,268 - +0.8 3,541,268 - +0.4 3,541,268 - +1.3 3,541,298 + -0.7 3,541,298 + +0.1 3,541,298 + +0.7 3,541,298 + -0.0 3,541,299 - -0.1 3,541,299 - +0.5 3,541,299 - +1.0 3,541,299 - -0.1 3,541,299 - +0.5 3,541,299 - +0.3 3,541,470 - PFR28_03038 0.41 +0.1 3,541,470 - PFR28_03038 0.41 +0.0 3,541,470 - PFR28_03038 0.41 -0.1 3,541,503 + PFR28_03038 0.49 +0.0 3,541,503 + PFR28_03038 0.49 +0.0 3,541,503 + PFR28_03038 0.49 -1.1 3,541,503 + PFR28_03038 0.49 +1.1 3,541,503 + PFR28_03038 0.49 +0.1 3,541,503 + PFR28_03038 0.49 -0.3 3,541,503 + PFR28_03038 0.49 -0.5 3,541,503 + PFR28_03038 0.49 +0.1 3,541,503 + PFR28_03038 0.49 +1.2 3,541,503 + PFR28_03038 0.49 -0.2 3,541,503 + PFR28_03038 0.49 +0.8 3,541,503 + PFR28_03038 0.49 -0.0 3,541,503 + PFR28_03038 0.49 -0.2 3,541,503 + PFR28_03038 0.49 -0.3 3,541,504 - PFR28_03038 0.49 +0.3 3,541,504 - PFR28_03038 0.49 +0.8 3,541,504 - PFR28_03038 0.49 +0.6 3,541,504 - PFR28_03038 0.49 -1.0 3,541,504 - PFR28_03038 0.49 -0.5 3,541,504 - PFR28_03038 0.49 -1.0 3,541,504 - PFR28_03038 0.49 +0.2 3,541,504 - PFR28_03038 0.49 -2.1 3,541,504 - PFR28_03038 0.49 +0.6 3,541,504 - PFR28_03038 0.49 -0.8 3,541,504 - PFR28_03038 0.49 +0.3 3,541,504 - PFR28_03038 0.49 -1.1 3,541,504 - PFR28_03038 0.49 -0.6 3,541,504 - PFR28_03038 0.49 -0.2 3,541,530 + PFR28_03038 0.55 +0.3 3,541,530 + PFR28_03038 0.55 +0.5 3,541,530 + PFR28_03038 0.55 -0.2 3,541,531 - PFR28_03038 0.56 -0.3 3,541,531 - PFR28_03038 0.56 +0.2 3,541,551 - PFR28_03038 0.61 +0.3 3,541,574 + PFR28_03038 0.66 +0.6 3,541,574 + PFR28_03038 0.66 -0.6 3,541,574 + PFR28_03038 0.66 +0.3 3,541,574 + PFR28_03038 0.66 -0.1 3,541,574 + PFR28_03038 0.66 +0.1 3,541,574 + PFR28_03038 0.66 -0.7 3,541,574 + PFR28_03038 0.66 -1.5 3,541,574 + PFR28_03038 0.66 +1.0 3,541,574 + PFR28_03038 0.66 -1.8 3,541,575 - PFR28_03038 0.66 +0.4 3,541,575 - PFR28_03038 0.66 -0.6 3,541,575 - PFR28_03038 0.66 -0.6 3,541,575 - PFR28_03038 0.66 -1.0 3,541,575 - PFR28_03038 0.66 -1.4 3,541,575 - PFR28_03038 0.66 +0.4 3,541,575 - PFR28_03038 0.66 +0.0 3,541,575 - PFR28_03038 0.66 +0.0 3,541,575 - PFR28_03038 0.66 -0.1 3,541,575 - PFR28_03038 0.66 -2.7 3,541,601 + PFR28_03038 0.73 -1.0 3,541,763 + +0.0 3,541,764 - +0.6 3,541,928 + -0.3 3,541,929 - -0.1 3,541,929 - +0.7 3,541,929 - -0.6 3,541,929 - -0.1 3,541,937 + -0.1 3,541,937 + -1.7 3,541,937 + +0.9 3,541,938 - +0.7 3,542,159 + +0.1 3,542,160 - +0.9 3,542,160 - -2.3 3,542,160 - +0.8 3,542,186 + -0.6 3,542,186 + -0.3 3,542,216 + -0.7 3,542,216 + +1.6 3,542,216 + +0.0 3,542,216 + +0.0 3,542,217 - +0.2 3,542,217 - +0.7 3,542,217 - -0.3 3,542,223 + +0.0 3,542,223 + -0.5 3,542,240 + -0.0 3,542,242 + +1.1 3,542,243 - -0.8 3,542,243 - +0.1 3,542,253 - -1.3 3,542,847 + PFR28_03039 0.51 +1.1 3,542,847 + PFR28_03039 0.51 -0.8 3,542,847 + PFR28_03039 0.51 +0.3 3,542,847 + PFR28_03039 0.51 -0.2 3,542,848 - PFR28_03039 0.52 -0.9 3,542,848 - PFR28_03039 0.52 -0.2 3,542,848 - PFR28_03039 0.52 -0.3 3,542,848 - PFR28_03039 0.52 -0.4 3,542,964 + PFR28_03039 0.61 -0.3 3,542,965 - PFR28_03039 0.61 -1.0 3,542,965 - PFR28_03039 0.61 +0.3 3,542,965 - PFR28_03039 0.61 -0.1 3,542,965 - PFR28_03039 0.61 -1.1 3,543,366 + -0.0 3,543,366 + -0.3 3,543,366 + +2.0 3,543,366 + -1.1 3,543,367 - +0.2 3,543,391 - -0.4 3,543,391 - +0.4 3,543,391 - +0.5 3,543,391 - +0.1 3,543,391 - +0.1 3,543,650 + PFR28_03040 0.22 -0.3 3,543,651 - PFR28_03040 0.22 +0.8 3,543,651 - PFR28_03040 0.22 +0.8 3,543,758 + PFR28_03040 0.37 +0.1 3,543,759 - PFR28_03040 0.37 -0.4 3,543,759 - PFR28_03040 0.37 -0.2 3,543,759 - PFR28_03040 0.37 -0.7 3,543,759 - PFR28_03040 0.37 +0.4 3,543,920 + PFR28_03040 0.59 +0.1 3,543,921 - PFR28_03040 0.60 -1.3 3,544,029 - PFR28_03040 0.75 -0.7 3,544,177 - -0.5 3,544,205 + +0.3 3,544,205 + +1.1 3,544,205 + +0.3 3,544,205 + -0.1 3,544,206 - +2.9 3,544,206 - +0.3 3,544,206 - +0.3 3,544,206 - +0.6 3,544,206 - -1.0 3,544,344 + PFR28_03041 0.43 +0.7 3,544,345 - PFR28_03041 0.43 +0.4 3,544,429 + PFR28_03041 0.74 +1.3 3,544,430 - PFR28_03041 0.74 +0.8 3,544,430 - PFR28_03041 0.74 +0.6 3,544,430 - PFR28_03041 0.74 +0.0 3,544,439 + PFR28_03041 0.78 +0.2
Or see this region's nucleotide sequence