Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS21645

Experiment: D-Glucose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C)
4,877,291	+		PFLU_RS21640	0.23	+0.6
4,877,291	+		PFLU_RS21640	0.23	-1.5
4,877,292	-		PFLU_RS21640	0.23	-2.5
4,877,292	-		PFLU_RS21640	0.23	-1.3
4,877,292	-		PFLU_RS21640	0.23	-2.4
4,877,292	-		PFLU_RS21640	0.23	+0.2
4,877,292	-		PFLU_RS21640	0.23	-1.9
4,877,565	+		PFLU_RS21640	0.47	+1.4
4,877,565	+		PFLU_RS21640	0.47	+0.6
4,877,565	+		PFLU_RS21640	0.47	-2.0
4,877,566	-		PFLU_RS21640	0.47	-0.0
4,877,566	-		PFLU_RS21640	0.47	-0.5
4,877,566	-		PFLU_RS21640	0.47	+0.7
4,877,585	+		PFLU_RS21640	0.49	+0.2
4,877,585	+		PFLU_RS21640	0.49	+1.1
4,877,962	-		PFLU_RS21640	0.82	+1.0
4,878,002	+		PFLU_RS21640	0.85	+0.1
4,878,222	+				-0.3
4,878,223	-				-0.9
4,878,480	-		PFLU_RS21645	0.12	-0.1
4,878,480	-		PFLU_RS21645	0.12	-0.5
4,878,689	+		PFLU_RS21645	0.21	-0.3
4,878,689	+		PFLU_RS21645	0.21	-2.8
4,878,689	+		PFLU_RS21645	0.21	-0.8
4,878,689	+		PFLU_RS21645	0.21	+1.5
4,878,690	-		PFLU_RS21645	0.21	-2.1
4,878,690	-		PFLU_RS21645	0.21	-2.1
4,878,690	-		PFLU_RS21645	0.21	-1.1
4,878,690	-		PFLU_RS21645	0.21	-0.9
4,878,812	+		PFLU_RS21645	0.27	-0.9
4,878,812	+		PFLU_RS21645	0.27	-1.6
4,878,812	+		PFLU_RS21645	0.27	-2.0
4,878,812	+		PFLU_RS21645	0.27	-0.7
4,878,812	+		PFLU_RS21645	0.27	-0.5
4,878,812	+		PFLU_RS21645	0.27	-3.3
4,878,813	-		PFLU_RS21645	0.27	+0.1
4,878,813	-		PFLU_RS21645	0.27	-2.2
4,878,813	-		PFLU_RS21645	0.27	-3.2
4,878,813	-		PFLU_RS21645	0.27	-1.7
4,878,813	-		PFLU_RS21645	0.27	-0.5
4,878,813	-		PFLU_RS21645	0.27	-0.3
4,878,813	-		PFLU_RS21645	0.27	+1.5
4,880,281	+				-2.4
4,880,281	+				-1.2
4,880,281	+				-0.9
4,880,281	+				+0.5
4,880,281	+				-1.9
4,880,281	+				-3.5
4,880,282	-				-0.4
4,880,282	-				-2.1
4,880,282	-				+0.6
4,880,287	-				-2.9
4,880,389	+				-2.1
4,880,389	+				-1.7
4,880,390	-				-1.3
4,880,446	+				-1.5
4,880,446	+				-0.3
4,880,446	+				+1.9
4,880,446	+				-0.5
4,880,447	-				+1.8
4,880,447	-				-0.1
4,880,447	-				-1.1
4,880,447	-				+0.5
4,880,447	-				-0.4
4,880,447	-				-0.1
4,880,454	+				+0.1
4,880,455	-				-1.2
4,880,455	-				+0.9
4,880,455	-				-0.3
4,880,475	+				+0.4
4,880,475	+				-1.2
4,880,475	+				-2.6
4,880,475	+				+0.3
4,880,475	+				-2.2
4,880,475	+				+0.6
4,880,475	+				+0.8
4,880,475	+				+0.2
4,880,475	+				-1.3
4,880,475	+				+0.3
4,880,475	+				+3.2
4,880,475	+				-1.0
4,880,475	+				+1.1
4,880,476	-				-1.7
4,880,476	-				+1.1
4,880,476	-				+0.4
4,880,476	-				+0.3
4,880,476	-				+0.2
4,880,476	-				-0.4
4,880,476	-				+1.1
4,880,476	-				-0.5
4,880,476	-				-1.8
4,880,476	-				-0.8
4,880,476	-				+0.7
4,880,476	-				+1.5
4,880,476	-				-2.1
4,880,476	-				-1.7
4,880,476	-				-2.7
4,880,476	-				-1.4
4,880,476	-				-0.1
4,880,476	-				-1.4
4,880,476	-				-0.2
4,880,476	-				+0.0
4,880,476	-				+0.5
4,880,476	-				-0.3
4,880,476	-				+0.1
4,880,476	-				-0.3
4,880,495	+				+0.9
4,880,495	+				-2.7
4,880,495	+				-0.5
4,880,495	+				-2.3
4,880,495	+				-0.1
4,880,496	-				-0.2
4,880,496	-				+0.7
4,880,496	-				-0.5
4,880,496	-				+0.3
4,880,496	-				+0.5
4,880,496	-				+0.0
4,880,496	-				-0.7
4,880,496	-				+0.1
4,880,627	+		PFLU_RS21650	0.23	+1.6
4,880,627	+		PFLU_RS21650	0.23	+1.5
4,880,627	+		PFLU_RS21650	0.23	+0.2
4,880,627	+		PFLU_RS21650	0.23	+1.0
4,880,628	-		PFLU_RS21650	0.23	+0.2
4,880,628	-		PFLU_RS21650	0.23	-1.3
4,880,628	-		PFLU_RS21650	0.23	-0.1
4,880,628	-		PFLU_RS21650	0.23	-0.1
4,880,628	-		PFLU_RS21650	0.23	+0.1
4,880,628	-		PFLU_RS21650	0.23	-2.4
4,880,710	+		PFLU_RS21650	0.34	-0.4
4,880,711	-		PFLU_RS21650	0.34	+0.2
4,880,962	+		PFLU_RS21650	0.66	+0.0
4,880,962	+		PFLU_RS21650	0.66	-0.3
4,880,962	+		PFLU_RS21650	0.66	+0.5
4,880,962	+		PFLU_RS21650	0.66	+0.7
4,880,962	+		PFLU_RS21650	0.66	-1.1
4,880,962	+		PFLU_RS21650	0.66	+0.5
4,880,962	+		PFLU_RS21650	0.66	-2.4
4,880,962	+		PFLU_RS21650	0.66	-0.2
4,880,962	+		PFLU_RS21650	0.66	-0.6
4,880,962	+		PFLU_RS21650	0.66	+2.3
4,880,963	-		PFLU_RS21650	0.66	+1.5
4,880,963	-		PFLU_RS21650	0.66	+1.6
4,880,963	-		PFLU_RS21650	0.66	-1.3
4,880,963	-		PFLU_RS21650	0.66	-1.5
4,880,963	-		PFLU_RS21650	0.66	+1.0
4,880,963	-		PFLU_RS21650	0.66	-1.5
4,880,963	-		PFLU_RS21650	0.66	-0.5
4,880,963	-		PFLU_RS21650	0.66	+1.0
4,880,963	-		PFLU_RS21650	0.66	+1.0
4,880,963	-		PFLU_RS21650	0.66	-0.1
4,881,017	+		PFLU_RS21650	0.72	-2.0
4,881,017	+		PFLU_RS21650	0.72	+0.7
4,881,017	+		PFLU_RS21650	0.72	+1.1
4,881,018	-		PFLU_RS21650	0.73	+0.9
4,881,018	-		PFLU_RS21650	0.73	-1.3
4,881,018	-		PFLU_RS21650	0.73	+0.2
4,881,018	-		PFLU_RS21650	0.73	-1.7
4,881,018	-		PFLU_RS21650	0.73	-0.1
4,881,085	+		PFLU_RS21650	0.81	+1.5
4,881,085	+		PFLU_RS21650	0.81	+1.8
4,881,086	-		PFLU_RS21650	0.81	-0.9
4,881,124	-		PFLU_RS21650	0.86	+0.3
4,881,124	-		PFLU_RS21650	0.86	-2.4
4,881,124	-		PFLU_RS21650	0.86	+1.8
4,881,224	+				+0.1
4,881,225	-				+0.8
4,881,233	+				-1.9
4,881,233	+				+1.5
4,881,233	+				-0.2
4,881,233	+				+0.3
4,881,233	+				+0.8
4,881,233	+				+1.5
4,881,233	+				-0.5
4,881,234	-				-1.1
4,881,234	-				+1.5
4,881,234	-				+1.7
4,881,234	-				-0.3
4,881,234	-				+2.1
4,881,253	+				-0.3
4,881,325	+		PFLU_RS21655	0.19	-1.3
4,881,326	-		PFLU_RS21655	0.19	-1.1
4,881,409	-		PFLU_RS21655	0.41	-2.6
4,881,409	-		PFLU_RS21655	0.41	-1.7
4,881,409	-		PFLU_RS21655	0.41	-1.2