Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS06885

Experiment: D-Glucose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C)
1,539,482	+		PFLU_RS06875	0.53	+1.4
1,539,482	+		PFLU_RS06875	0.53	+0.7
1,539,482	+		PFLU_RS06875	0.53	+0.5
1,539,482	+		PFLU_RS06875	0.53	-0.1
1,539,482	+		PFLU_RS06875	0.53	+1.6
1,539,482	+		PFLU_RS06875	0.53	-0.5
1,539,483	-		PFLU_RS06875	0.53	+0.6
1,539,483	-		PFLU_RS06875	0.53	+0.6
1,539,525	+		PFLU_RS06875	0.57	-0.5
1,539,525	+		PFLU_RS06875	0.57	-0.4
1,539,525	+		PFLU_RS06875	0.57	-0.6
1,539,526	-		PFLU_RS06875	0.57	+1.0
1,539,526	-		PFLU_RS06875	0.57	-0.1
1,539,526	-		PFLU_RS06875	0.57	-0.5
1,539,526	-		PFLU_RS06875	0.57	+2.1
1,539,526	-		PFLU_RS06875	0.57	-0.5
1,539,534	+		PFLU_RS06875	0.58	+0.0
1,539,535	-		PFLU_RS06875	0.58	+0.4
1,539,621	+		PFLU_RS06875	0.66	-0.2
1,539,622	-		PFLU_RS06875	0.66	+0.5
1,539,622	-		PFLU_RS06875	0.66	-0.9
1,539,622	-		PFLU_RS06875	0.66	-1.5
1,539,622	-		PFLU_RS06875	0.66	-0.6
1,539,622	-		PFLU_RS06875	0.66	+0.4
1,539,622	-		PFLU_RS06875	0.66	+0.7
1,539,627	+		PFLU_RS06875	0.67	-1.0
1,539,628	-		PFLU_RS06875	0.67	+0.6
1,539,743	+		PFLU_RS06875	0.78	+0.1
1,539,744	-		PFLU_RS06875	0.78	-1.2
1,539,744	-		PFLU_RS06875	0.78	-0.3
1,539,747	+		PFLU_RS06875	0.78	-0.1
1,539,747	+		PFLU_RS06875	0.78	+0.3
1,539,747	+		PFLU_RS06875	0.78	-1.2
1,539,747	+		PFLU_RS06875	0.78	-0.4
1,539,747	+		PFLU_RS06875	0.78	-1.6
1,539,748	-		PFLU_RS06875	0.78	-0.1
1,539,748	-		PFLU_RS06875	0.78	+0.9
1,539,748	-		PFLU_RS06875	0.78	+1.3
1,539,748	-		PFLU_RS06875	0.78	-0.4
1,539,748	-		PFLU_RS06875	0.78	+1.2
1,539,748	-		PFLU_RS06875	0.78	-0.4
1,539,795	-		PFLU_RS06875	0.82	+0.7
1,539,904	+				+0.7
1,539,904	+				-1.3
1,539,905	-				+0.5
1,539,933	+				+0.1
1,539,934	-				+1.0
1,539,934	-				-0.5
1,539,934	-				-2.3
1,539,934	-				+0.4
1,540,095	-		PFLU_RS06880	0.37	+0.9
1,540,096	+		PFLU_RS06880	0.37	+1.3
1,540,096	+		PFLU_RS06880	0.37	-0.7
1,540,097	-		PFLU_RS06880	0.38	+1.8
1,540,109	+		PFLU_RS06880	0.41	+0.7
1,540,109	+		PFLU_RS06880	0.41	+0.2
1,540,110	-		PFLU_RS06880	0.42	+0.8
1,540,110	-		PFLU_RS06880	0.42	+0.5
1,540,124	+		PFLU_RS06880	0.46	-0.4
1,540,124	+		PFLU_RS06880	0.46	-0.4
1,540,124	+		PFLU_RS06880	0.46	+1.8
1,540,125	-		PFLU_RS06880	0.46	+1.3
1,540,125	-		PFLU_RS06880	0.46	+2.1
1,540,125	-		PFLU_RS06880	0.46	+0.1
1,540,125	-		PFLU_RS06880	0.46	+0.3
1,540,125	-		PFLU_RS06880	0.46	+0.9
1,540,160	+		PFLU_RS06880	0.58	+0.2
1,540,160	+		PFLU_RS06880	0.58	-0.7
1,540,160	+		PFLU_RS06880	0.58	+0.5
1,540,160	+		PFLU_RS06880	0.58	-2.6
1,540,160	+		PFLU_RS06880	0.58	-2.0
1,540,161	-		PFLU_RS06880	0.58	+0.9
1,540,161	-		PFLU_RS06880	0.58	+1.5
1,540,172	+		PFLU_RS06880	0.62	+0.1
1,540,172	+		PFLU_RS06880	0.62	-0.4
1,540,172	+		PFLU_RS06880	0.62	-2.2
1,540,172	+		PFLU_RS06880	0.62	+0.8
1,540,172	+		PFLU_RS06880	0.62	+3.0
1,540,172	+		PFLU_RS06880	0.62	-1.0
1,540,172	+		PFLU_RS06880	0.62	-0.1
1,540,172	+		PFLU_RS06880	0.62	+0.4
1,540,172	+		PFLU_RS06880	0.62	-0.1
1,540,172	+		PFLU_RS06880	0.62	+1.6
1,540,172	+		PFLU_RS06880	0.62	-1.2
1,540,172	+		PFLU_RS06880	0.62	-0.9
1,540,173	-		PFLU_RS06880	0.62	+1.5
1,540,173	-		PFLU_RS06880	0.62	+0.5
1,540,241	-		PFLU_RS06880	0.84	+1.1
1,540,289	+				-0.2
1,540,289	+				+0.3
1,540,289	+				+0.8
1,540,289	+				+0.8
1,540,289	+				-0.2
1,540,289	+				-2.0
1,540,289	+				-0.1
1,540,289	+				-1.8
1,540,289	+				-1.0
1,540,289	+				-2.5
1,540,290	-				-0.3
1,540,290	-				-0.6
1,540,290	-				+2.1
1,540,290	-				+0.3
1,540,292	+				+1.3
1,540,292	+				-2.3
1,540,292	+				+0.6
1,540,292	+				+0.6
1,540,293	-				+0.5
1,540,293	-				-0.6
1,540,293	-				-1.7
1,540,293	-				+0.6
1,540,317	+				+0.3
1,540,318	-				+1.2
1,540,318	-				-0.5
1,540,334	-				+1.5
1,540,334	-				-1.1
1,540,334	-				-1.4
1,540,367	+				-1.4
1,540,367	+				+1.9
1,540,406	+				-0.2
1,540,426	+				+1.1
1,540,426	+				+0.6
1,540,426	+				-1.0
1,540,426	+				-0.4
1,540,426	+				-0.4
1,540,426	+				+1.9
1,540,426	+				-1.6
1,540,426	+				+0.2
1,540,427	-				+1.7
1,540,427	-				+1.8
1,540,427	-				+0.5
1,540,427	-				-0.4
1,540,427	-				-2.0
1,540,427	-				-1.7
1,540,427	-				-2.3
1,540,613	+		PFLU_RS06885	0.10	-2.1
1,540,616	+		PFLU_RS06885	0.10	+0.0
1,540,617	-		PFLU_RS06885	0.10	+0.8
1,540,735	-		PFLU_RS06885	0.19	+1.1
1,540,767	+		PFLU_RS06885	0.21	+0.9
1,540,768	-		PFLU_RS06885	0.21	-0.0
1,540,768	-		PFLU_RS06885	0.21	+0.4
1,540,774	-		PFLU_RS06885	0.22	-0.5
1,540,845	+		PFLU_RS06885	0.27	+1.2
1,540,845	+		PFLU_RS06885	0.27	-0.3
1,540,845	+		PFLU_RS06885	0.27	-0.9
1,540,956	+		PFLU_RS06885	0.35	+0.6
1,540,957	-		PFLU_RS06885	0.35	-2.5
1,541,013	+		PFLU_RS06885	0.39	+1.6
1,541,070	+		PFLU_RS06885	0.43	+0.9
1,541,070	+		PFLU_RS06885	0.43	+0.3
1,541,070	+		PFLU_RS06885	0.43	+0.5
1,541,071	-		PFLU_RS06885	0.43	-0.1
1,541,091	+		PFLU_RS06885	0.45	-1.6
1,541,091	+		PFLU_RS06885	0.45	-0.3
1,541,092	-		PFLU_RS06885	0.45	-0.8
1,541,092	-		PFLU_RS06885	0.45	-0.7
1,541,092	-		PFLU_RS06885	0.45	-1.4
1,541,148	-		PFLU_RS06885	0.49	+0.4
1,541,167	-		PFLU_RS06885	0.50	+0.9
1,541,181	+		PFLU_RS06885	0.51	+0.2
1,541,278	+		PFLU_RS06885	0.58	+0.3
1,541,279	-		PFLU_RS06885	0.58	-1.9
1,541,320	-		PFLU_RS06885	0.61	+2.6
1,541,341	+		PFLU_RS06885	0.62	-0.4
1,541,458	-		PFLU_RS06885	0.71	+0.4
1,541,551	+		PFLU_RS06885	0.78	-1.4
1,541,551	+		PFLU_RS06885	0.78	-0.6
1,541,552	-		PFLU_RS06885	0.78	+0.3
1,541,552	-		PFLU_RS06885	0.78	-2.4
1,541,592	-		PFLU_RS06885	0.81	+0.2
1,541,626	+		PFLU_RS06885	0.83	+0.8
1,541,626	+		PFLU_RS06885	0.83	+1.1
1,541,629	-		PFLU_RS06885	0.83	-2.2
1,541,659	+		PFLU_RS06885	0.85	+0.4
1,541,689	+		PFLU_RS06885	0.88	+1.0
1,541,692	+		PFLU_RS06885	0.88	-1.1
1,541,693	-		PFLU_RS06885	0.88	-2.1
1,541,693	-		PFLU_RS06885	0.88	-1.2
1,541,693	-		PFLU_RS06885	0.88	+1.1
1,541,693	-		PFLU_RS06885	0.88	+0.6
1,541,700	-		PFLU_RS06885	0.88	-0.6
1,541,719	+		PFLU_RS06885	0.90	+0.1
1,541,719	+		PFLU_RS06885	0.90	-0.2
1,541,720	-		PFLU_RS06885	0.90	-1.0
1,541,720	-		PFLU_RS06885	0.90	-0.7
1,541,781	+				+0.1
1,541,781	+				+0.4
1,541,782	-				-0.6
1,541,782	-				-2.8
1,541,809	+				-1.2
1,541,860	+				-0.9
1,541,891	+				-0.5
1,541,892	-				-2.1
1,541,983	+				+0.8
1,541,983	+				+0.3
1,542,063	+		PFLU_RS06890	0.13	+1.0
1,542,063	+		PFLU_RS06890	0.13	-0.1
1,542,063	+		PFLU_RS06890	0.13	-2.0
1,542,063	+		PFLU_RS06890	0.13	-1.1
1,542,064	-		PFLU_RS06890	0.13	-0.3
1,542,334	+		PFLU_RS06890	0.59	-1.1
1,542,334	+		PFLU_RS06890	0.59	-0.8
1,542,334	+		PFLU_RS06890	0.59	-1.2
1,542,334	+		PFLU_RS06890	0.59	+1.4
1,542,335	-		PFLU_RS06890	0.59	-2.4
1,542,371	+		PFLU_RS06890	0.65	+0.2
1,542,372	-		PFLU_RS06890	0.65	-1.1
1,542,372	-		PFLU_RS06890	0.65	-2.1
1,542,372	-		PFLU_RS06890	0.65	-0.3
1,542,372	-		PFLU_RS06890	0.65	-1.4
1,542,384	+		PFLU_RS06890	0.68	+0.3
1,542,384	+		PFLU_RS06890	0.68	+0.6
1,542,385	-		PFLU_RS06890	0.68	+0.1
1,542,503	+		PFLU_RS06890	0.88	-1.0
1,542,503	+		PFLU_RS06890	0.88	+0.9
1,542,504	-		PFLU_RS06890	0.88	+2.4
1,542,518	+				+0.6
1,542,518	+				+1.1
1,542,519	-				-0.2
1,542,519	-				+0.4
1,542,519	-				-0.1
1,542,519	-				+1.3
1,542,519	-				-0.4
1,542,519	-				+1.0
1,542,564	-				+1.6
1,542,703	+		PFLU_RS06895	0.11	-3.0
1,542,703	+		PFLU_RS06895	0.11	+0.1
1,542,703	+		PFLU_RS06895	0.11	-0.1
1,542,703	+		PFLU_RS06895	0.11	+1.3
1,542,703	+		PFLU_RS06895	0.11	-2.9
1,542,703	+		PFLU_RS06895	0.11	-3.2
1,542,704	-		PFLU_RS06895	0.11	+0.3
1,542,704	-		PFLU_RS06895	0.11	+0.3
1,542,704	-		PFLU_RS06895	0.11	+0.2
1,542,704	-		PFLU_RS06895	0.11	-1.4
1,542,704	-		PFLU_RS06895	0.11	+0.0
1,542,704	-		PFLU_RS06895	0.11	-1.3
1,542,704	-		PFLU_RS06895	0.11	+2.3
1,542,704	-		PFLU_RS06895	0.11	-0.2
1,542,800	-		PFLU_RS06895	0.19	+1.2