Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS01145 and PFLU_RS01150 overlap by 4 nucleotides PFLU_RS01150 and PFLU_RS01155 overlap by 4 nucleotides
PFLU_RS01145: PFLU_RS01145 - efflux RND transporter periplasmic adaptor subunit, at 251,059 to 252,141
_RS01145
PFLU_RS01150: PFLU_RS01150 - efflux RND transporter periplasmic adaptor subunit, at 252,138 to 253,208
_RS01150
PFLU_RS01155: PFLU_RS01155 - efflux RND transporter permease subunit, at 253,205 to 256,270
_RS01155
Position (kb) 252
253
254 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 251.449 kb on + strand, within PFLU_RS01145 at 251.467 kb on + strand, within PFLU_RS01145 at 251.557 kb on + strand, within PFLU_RS01145 at 251.557 kb on + strand, within PFLU_RS01145 at 251.559 kb on + strand, within PFLU_RS01145 at 251.560 kb on - strand, within PFLU_RS01145 at 251.560 kb on - strand, within PFLU_RS01145 at 251.690 kb on - strand, within PFLU_RS01145 at 251.690 kb on - strand, within PFLU_RS01145 at 251.690 kb on - strand, within PFLU_RS01145 at 251.690 kb on - strand, within PFLU_RS01145 at 251.690 kb on - strand, within PFLU_RS01145 at 251.777 kb on + strand, within PFLU_RS01145 at 251.778 kb on - strand, within PFLU_RS01145 at 252.157 kb on + strand at 252.157 kb on + strand at 252.158 kb on - strand at 252.158 kb on - strand at 252.176 kb on - strand at 252.229 kb on + strand at 252.305 kb on + strand, within PFLU_RS01150 at 252.305 kb on + strand, within PFLU_RS01150 at 252.462 kb on + strand, within PFLU_RS01150 at 252.462 kb on + strand, within PFLU_RS01150 at 252.462 kb on + strand, within PFLU_RS01150 at 252.462 kb on + strand, within PFLU_RS01150 at 252.462 kb on + strand, within PFLU_RS01150 at 252.463 kb on - strand, within PFLU_RS01150 at 252.463 kb on - strand, within PFLU_RS01150 at 252.463 kb on - strand, within PFLU_RS01150 at 252.463 kb on - strand, within PFLU_RS01150 at 252.624 kb on + strand, within PFLU_RS01150 at 252.624 kb on + strand, within PFLU_RS01150 at 252.624 kb on + strand, within PFLU_RS01150 at 252.624 kb on + strand, within PFLU_RS01150 at 252.624 kb on + strand, within PFLU_RS01150 at 252.624 kb on + strand, within PFLU_RS01150 at 252.625 kb on - strand, within PFLU_RS01150 at 252.625 kb on - strand, within PFLU_RS01150 at 253.026 kb on - strand, within PFLU_RS01150 at 253.224 kb on + strand at 253.224 kb on + strand at 253.225 kb on - strand at 253.262 kb on + strand at 253.262 kb on + strand at 253.263 kb on - strand at 253.301 kb on + strand at 253.301 kb on + strand at 253.301 kb on + strand at 253.301 kb on + strand at 253.301 kb on + strand at 253.302 kb on - strand at 253.302 kb on - strand at 253.302 kb on - strand at 253.302 kb on - strand at 253.451 kb on + strand at 253.451 kb on + strand at 253.451 kb on + strand at 253.451 kb on + strand at 253.451 kb on + strand at 253.464 kb on - strand at 253.464 kb on - strand at 253.643 kb on + strand, within PFLU_RS01155 at 253.643 kb on + strand, within PFLU_RS01155 at 253.644 kb on - strand, within PFLU_RS01155 at 253.644 kb on - strand, within PFLU_RS01155 at 253.644 kb on - strand, within PFLU_RS01155 at 253.644 kb on - strand, within PFLU_RS01155 at 253.688 kb on + strand, within PFLU_RS01155 at 253.689 kb on - strand, within PFLU_RS01155 at 253.689 kb on - strand, within PFLU_RS01155 at 253.689 kb on - strand, within PFLU_RS01155 at 253.772 kb on + strand, within PFLU_RS01155 at 253.772 kb on + strand, within PFLU_RS01155 at 254.010 kb on - strand, within PFLU_RS01155 at 254.010 kb on - strand, within PFLU_RS01155 at 254.010 kb on - strand, within PFLU_RS01155 at 254.010 kb on - strand, within PFLU_RS01155
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 251,449 + PFLU_RS01145 0.36 -1.7 251,467 + PFLU_RS01145 0.38 +0.6 251,557 + PFLU_RS01145 0.46 -0.3 251,557 + PFLU_RS01145 0.46 -0.8 251,559 + PFLU_RS01145 0.46 +1.1 251,560 - PFLU_RS01145 0.46 -0.0 251,560 - PFLU_RS01145 0.46 +0.4 251,690 - PFLU_RS01145 0.58 -0.0 251,690 - PFLU_RS01145 0.58 +0.4 251,690 - PFLU_RS01145 0.58 +0.5 251,690 - PFLU_RS01145 0.58 -0.7 251,690 - PFLU_RS01145 0.58 -0.6 251,777 + PFLU_RS01145 0.66 +0.7 251,778 - PFLU_RS01145 0.66 +0.2 252,157 + -0.1 252,157 + -0.2 252,158 - +0.6 252,158 - +2.7 252,176 - +0.5 252,229 + +1.6 252,305 + PFLU_RS01150 0.16 +1.0 252,305 + PFLU_RS01150 0.16 -0.2 252,462 + PFLU_RS01150 0.30 +2.4 252,462 + PFLU_RS01150 0.30 +1.8 252,462 + PFLU_RS01150 0.30 +1.3 252,462 + PFLU_RS01150 0.30 +0.6 252,462 + PFLU_RS01150 0.30 -0.3 252,463 - PFLU_RS01150 0.30 +1.7 252,463 - PFLU_RS01150 0.30 -0.1 252,463 - PFLU_RS01150 0.30 +1.1 252,463 - PFLU_RS01150 0.30 -1.6 252,624 + PFLU_RS01150 0.45 +1.3 252,624 + PFLU_RS01150 0.45 +0.2 252,624 + PFLU_RS01150 0.45 +0.6 252,624 + PFLU_RS01150 0.45 +1.0 252,624 + PFLU_RS01150 0.45 +1.7 252,624 + PFLU_RS01150 0.45 +0.1 252,625 - PFLU_RS01150 0.45 +0.3 252,625 - PFLU_RS01150 0.45 +1.0 253,026 - PFLU_RS01150 0.83 -1.7 253,224 + +0.9 253,224 + +1.4 253,225 - -2.4 253,262 + -1.1 253,262 + -0.4 253,263 - -1.1 253,301 + +0.9 253,301 + +0.3 253,301 + -0.0 253,301 + +0.8 253,301 + -0.1 253,302 - +0.6 253,302 - -0.4 253,302 - +0.1 253,302 - +0.9 253,451 + +2.4 253,451 + -1.0 253,451 + -1.7 253,451 + +0.1 253,451 + -0.1 253,464 - +0.8 253,464 - -1.9 253,643 + PFLU_RS01155 0.14 +0.4 253,643 + PFLU_RS01155 0.14 -1.3 253,644 - PFLU_RS01155 0.14 +1.1 253,644 - PFLU_RS01155 0.14 -0.5 253,644 - PFLU_RS01155 0.14 -3.2 253,644 - PFLU_RS01155 0.14 +0.3 253,688 + PFLU_RS01155 0.16 -0.1 253,689 - PFLU_RS01155 0.16 +0.2 253,689 - PFLU_RS01155 0.16 +0.0 253,689 - PFLU_RS01155 0.16 +0.6 253,772 + PFLU_RS01155 0.18 -0.1 253,772 + PFLU_RS01155 0.18 +0.9 254,010 - PFLU_RS01155 0.26 -0.2 254,010 - PFLU_RS01155 0.26 -1.2 254,010 - PFLU_RS01155 0.26 +0.3 254,010 - PFLU_RS01155 0.26 +0.2
Or see this region's nucleotide sequence