Strain Fitness in Pseudomonas sp. S08-1 around OH686_23440

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_23435 and OH686_23440 are separated by 192 nucleotidesOH686_23440 and OH686_23445 are separated by 202 nucleotidesOH686_23445 and OH686_23450 are separated by 81 nucleotides OH686_23435: OH686_23435 - hypothetical protein, at 4,748,969 to 4,750,042 _23435 OH686_23440: OH686_23440 - hypothetical protein, at 4,750,235 to 4,750,645 _23440 OH686_23445: OH686_23445 - protein of unknown function DUF1232, at 4,750,848 to 4,751,228 _23445 OH686_23450: OH686_23450 - Putative sulfatase, at 4,751,310 to 4,753,283 _23450 Position (kb) 4750 4751Strain fitness (log2 ratio) -2 -1 0 1 2at 4749.275 kb on + strand, within OH686_23435at 4749.293 kb on + strand, within OH686_23435at 4749.398 kb on + strand, within OH686_23435at 4749.398 kb on + strand, within OH686_23435at 4749.399 kb on - strand, within OH686_23435at 4749.446 kb on + strand, within OH686_23435at 4749.447 kb on - strand, within OH686_23435at 4749.467 kb on + strand, within OH686_23435at 4749.467 kb on + strand, within OH686_23435at 4749.467 kb on + strand, within OH686_23435at 4749.482 kb on - strand, within OH686_23435at 4749.614 kb on + strand, within OH686_23435at 4749.614 kb on + strand, within OH686_23435at 4749.674 kb on + strand, within OH686_23435at 4749.674 kb on + strand, within OH686_23435at 4749.674 kb on + strand, within OH686_23435at 4749.674 kb on + strand, within OH686_23435at 4749.674 kb on + strand, within OH686_23435at 4749.674 kb on + strand, within OH686_23435at 4749.674 kb on + strand, within OH686_23435at 4749.674 kb on + strand, within OH686_23435at 4749.674 kb on + strand, within OH686_23435at 4749.675 kb on - strand, within OH686_23435at 4749.675 kb on - strand, within OH686_23435at 4749.675 kb on - strand, within OH686_23435at 4749.809 kb on + strand, within OH686_23435at 4749.809 kb on + strand, within OH686_23435at 4749.810 kb on - strand, within OH686_23435at 4749.860 kb on + strand, within OH686_23435at 4749.860 kb on + strand, within OH686_23435at 4749.860 kb on + strand, within OH686_23435at 4749.860 kb on + strand, within OH686_23435at 4749.995 kb on + strandat 4749.995 kb on + strandat 4749.996 kb on - strandat 4749.996 kb on - strandat 4750.116 kb on + strandat 4750.116 kb on + strandat 4750.117 kb on - strandat 4750.117 kb on - strandat 4750.117 kb on - strandat 4750.117 kb on - strandat 4750.271 kb on - strandat 4750.271 kb on - strandat 4750.283 kb on + strand, within OH686_23440at 4750.283 kb on + strand, within OH686_23440at 4750.284 kb on - strand, within OH686_23440at 4750.284 kb on - strand, within OH686_23440at 4750.284 kb on - strand, within OH686_23440at 4750.335 kb on + strand, within OH686_23440at 4750.335 kb on + strand, within OH686_23440at 4750.336 kb on - strand, within OH686_23440at 4750.656 kb on - strandat 4750.756 kb on + strandat 4750.757 kb on - strandat 4750.778 kb on + strandat 4750.778 kb on + strandat 4750.787 kb on + strandat 4750.788 kb on - strandat 4750.788 kb on - strandat 4750.806 kb on + strandat 4750.807 kb on - strandat 4750.977 kb on + strand, within OH686_23445at 4750.977 kb on + strand, within OH686_23445at 4750.978 kb on - strand, within OH686_23445at 4750.978 kb on - strand, within OH686_23445at 4750.978 kb on - strand, within OH686_23445at 4750.978 kb on - strand, within OH686_23445at 4751.028 kb on + strand, within OH686_23445at 4751.028 kb on + strand, within OH686_23445at 4751.029 kb on - strand, within OH686_23445at 4751.029 kb on - strand, within OH686_23445at 4751.029 kb on - strand, within OH686_23445at 4751.030 kb on + strand, within OH686_23445at 4751.030 kb on + strand, within OH686_23445at 4751.031 kb on - strand, within OH686_23445at 4751.031 kb on - strand, within OH686_23445at 4751.031 kb on - strand, within OH686_23445at 4751.031 kb on - strand, within OH686_23445at 4751.031 kb on - strand, within OH686_23445at 4751.031 kb on - strand, within OH686_23445at 4751.333 kb on + strandat 4751.333 kb on + strandat 4751.333 kb on + strandat 4751.333 kb on + strandat 4751.333 kb on + strandat 4751.333 kb on + strandat 4751.333 kb on + strandat 4751.334 kb on - strandat 4751.334 kb on - strandat 4751.334 kb on - strandat 4751.334 kb on - strandat 4751.334 kb on - strandat 4751.334 kb on - strandat 4751.334 kb on - strandat 4751.337 kb on + strandat 4751.337 kb on + strandat 4751.337 kb on + strandat 4751.337 kb on + strandat 4751.337 kb on + strandat 4751.337 kb on + strandat 4751.338 kb on - strandat 4751.338 kb on - strandat 4751.338 kb on - strandat 4751.354 kb on + strandat 4751.354 kb on + strandat 4751.354 kb on + strandat 4751.354 kb on + strandat 4751.355 kb on - strandat 4751.355 kb on - strandat 4751.355 kb on - strandat 4751.369 kb on + strandat 4751.369 kb on + strandat 4751.369 kb on + strandat 4751.369 kb on + strandat 4751.369 kb on + strandat 4751.370 kb on - strandat 4751.370 kb on - strandat 4751.419 kb on + strandat 4751.419 kb on + strandat 4751.419 kb on + strandat 4751.419 kb on + strandat 4751.420 kb on - strandat 4751.420 kb on - strandat 4751.420 kb on - strandat 4751.488 kb on + strandat 4751.489 kb on - strandat 4751.489 kb on - strandat 4751.508 kb on + strand, within OH686_23450at 4751.509 kb on - strand, within OH686_23450at 4751.509 kb on - strand, within OH686_23450at 4751.553 kb on + strand, within OH686_23450at 4751.553 kb on + strand, within OH686_23450at 4751.553 kb on + strand, within OH686_23450at 4751.554 kb on - strand, within OH686_23450at 4751.554 kb on - strand, within OH686_23450at 4751.554 kb on - strand, within OH686_23450at 4751.617 kb on + strand, within OH686_23450at 4751.617 kb on + strand, within OH686_23450at 4751.618 kb on - strand, within OH686_23450at 4751.618 kb on - strand, within OH686_23450

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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4,749,275 + OH686_23435 0.28 +1.1
4,749,293 + OH686_23435 0.30 -1.7
4,749,398 + OH686_23435 0.40 +0.0
4,749,398 + OH686_23435 0.40 -0.3
4,749,399 - OH686_23435 0.40 -0.3
4,749,446 + OH686_23435 0.44 +1.1
4,749,447 - OH686_23435 0.45 +0.5
4,749,467 + OH686_23435 0.46 -0.3
4,749,467 + OH686_23435 0.46 +1.0
4,749,467 + OH686_23435 0.46 +0.7
4,749,482 - OH686_23435 0.48 -0.3
4,749,614 + OH686_23435 0.60 -0.1
4,749,614 + OH686_23435 0.60 +0.5
4,749,674 + OH686_23435 0.66 -0.7
4,749,674 + OH686_23435 0.66 -0.6
4,749,674 + OH686_23435 0.66 +0.7
4,749,674 + OH686_23435 0.66 -0.8
4,749,674 + OH686_23435 0.66 -0.5
4,749,674 + OH686_23435 0.66 -0.4
4,749,674 + OH686_23435 0.66 -0.4
4,749,674 + OH686_23435 0.66 -0.3
4,749,674 + OH686_23435 0.66 -0.1
4,749,675 - OH686_23435 0.66 +0.8
4,749,675 - OH686_23435 0.66 -0.1
4,749,675 - OH686_23435 0.66 +0.4
4,749,809 + OH686_23435 0.78 -1.0
4,749,809 + OH686_23435 0.78 -0.1
4,749,810 - OH686_23435 0.78 +0.5
4,749,860 + OH686_23435 0.83 +0.5
4,749,860 + OH686_23435 0.83 +0.3
4,749,860 + OH686_23435 0.83 +0.1
4,749,860 + OH686_23435 0.83 -0.2
4,749,995 + -0.2
4,749,995 + -0.8
4,749,996 - +0.6
4,749,996 - +1.6
4,750,116 + +0.6
4,750,116 + +0.3
4,750,117 - +1.1
4,750,117 - +1.0
4,750,117 - -0.3
4,750,117 - -0.8
4,750,271 - +0.1
4,750,271 - -0.2
4,750,283 + OH686_23440 0.12 -0.0
4,750,283 + OH686_23440 0.12 +0.2
4,750,284 - OH686_23440 0.12 +1.1
4,750,284 - OH686_23440 0.12 +0.7
4,750,284 - OH686_23440 0.12 +0.3
4,750,335 + OH686_23440 0.24 -0.5
4,750,335 + OH686_23440 0.24 +0.4
4,750,336 - OH686_23440 0.25 +0.8
4,750,656 - -0.4
4,750,756 + -0.2
4,750,757 - +1.2
4,750,778 + -0.6
4,750,778 + +0.0
4,750,787 + -0.3
4,750,788 - +0.1
4,750,788 - -0.2
4,750,806 + +0.9
4,750,807 - -0.6
4,750,977 + OH686_23445 0.34 +2.2
4,750,977 + OH686_23445 0.34 +1.9
4,750,978 - OH686_23445 0.34 +0.2
4,750,978 - OH686_23445 0.34 +0.1
4,750,978 - OH686_23445 0.34 -0.1
4,750,978 - OH686_23445 0.34 -0.3
4,751,028 + OH686_23445 0.47 -0.6
4,751,028 + OH686_23445 0.47 +0.2
4,751,029 - OH686_23445 0.48 +0.3
4,751,029 - OH686_23445 0.48 +0.3
4,751,029 - OH686_23445 0.48 -0.8
4,751,030 + OH686_23445 0.48 +0.5
4,751,030 + OH686_23445 0.48 +0.0
4,751,031 - OH686_23445 0.48 -0.4
4,751,031 - OH686_23445 0.48 -0.9
4,751,031 - OH686_23445 0.48 -1.4
4,751,031 - OH686_23445 0.48 -0.7
4,751,031 - OH686_23445 0.48 +0.5
4,751,031 - OH686_23445 0.48 +0.3
4,751,333 + -0.4
4,751,333 + -0.3
4,751,333 + +0.2
4,751,333 + -0.0
4,751,333 + +0.3
4,751,333 + -0.5
4,751,333 + +1.0
4,751,334 - +0.7
4,751,334 - -0.0
4,751,334 - -0.0
4,751,334 - -0.1
4,751,334 - -0.4
4,751,334 - -0.1
4,751,334 - +0.2
4,751,337 + -0.3
4,751,337 + +0.4
4,751,337 + -0.2
4,751,337 + -0.7
4,751,337 + -0.8
4,751,337 + +0.7
4,751,338 - +0.6
4,751,338 - -0.2
4,751,338 - +1.2
4,751,354 + -0.4
4,751,354 + +0.2
4,751,354 + -0.5
4,751,354 + +1.3
4,751,355 - +0.4
4,751,355 - +1.4
4,751,355 - +0.1
4,751,369 + -0.2
4,751,369 + -0.5
4,751,369 + +1.0
4,751,369 + +0.4
4,751,369 + -0.6
4,751,370 - -1.0
4,751,370 - +0.7
4,751,419 + +0.2
4,751,419 + +0.1
4,751,419 + +0.5
4,751,419 + -0.0
4,751,420 - +0.0
4,751,420 - +0.4
4,751,420 - -2.1
4,751,488 + +0.7
4,751,489 - +0.6
4,751,489 - +1.3
4,751,508 + OH686_23450 0.10 +1.2
4,751,509 - OH686_23450 0.10 -0.6
4,751,509 - OH686_23450 0.10 +0.6
4,751,553 + OH686_23450 0.12 -0.4
4,751,553 + OH686_23450 0.12 -0.2
4,751,553 + OH686_23450 0.12 +0.1
4,751,554 - OH686_23450 0.12 -0.4
4,751,554 - OH686_23450 0.12 +1.1
4,751,554 - OH686_23450 0.12 -1.7
4,751,617 + OH686_23450 0.16 -0.2
4,751,617 + OH686_23450 0.16 +0.8
4,751,618 - OH686_23450 0.16 -1.4
4,751,618 - OH686_23450 0.16 +0.3

Or see this region's nucleotide sequence