Strain Fitness in Pseudomonas sp. S08-1 around OH686_21155

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_21145 and OH686_21150 overlap by 4 nucleotidesOH686_21150 and OH686_21155 are separated by 52 nucleotidesOH686_21155 and OH686_21160 are separated by 60 nucleotidesOH686_21160 and OH686_21165 are separated by 10 nucleotidesOH686_21165 and OH686_21170 are separated by 21 nucleotides OH686_21145: OH686_21145 - phosphogluconate dehydratase, at 4,332,266 to 4,334,089 _21145 OH686_21150: OH686_21150 - 6-phosphogluconolactonase , eukaryotic type, at 4,334,086 to 4,334,799 _21150 OH686_21155: OH686_21155 - CDS, at 4,334,852 to 4,334,965 _21155 OH686_21160: OH686_21160 - PhnB protein, at 4,335,026 to 4,335,448 _21160 OH686_21165: OH686_21165 - PhnB protein / putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein, at 4,335,459 to 4,335,881 _21165 OH686_21170: OH686_21170 - Transcriptional regulator, AraC family, at 4,335,903 to 4,336,646 _21170 Position (kb) 4334 4335Strain fitness (log2 ratio) -2 -1 0 1at 4333.894 kb on + strand, within OH686_21145at 4333.895 kb on - strand, within OH686_21145at 4334.121 kb on - strandat 4334.244 kb on + strand, within OH686_21150at 4334.244 kb on + strand, within OH686_21150at 4334.245 kb on - strand, within OH686_21150at 4334.419 kb on + strand, within OH686_21150at 4334.419 kb on + strand, within OH686_21150at 4334.420 kb on - strand, within OH686_21150at 4334.487 kb on + strand, within OH686_21150at 4334.869 kb on + strand, within OH686_21155at 4334.883 kb on + strand, within OH686_21155at 4334.884 kb on - strand, within OH686_21155at 4334.884 kb on - strand, within OH686_21155at 4334.884 kb on - strand, within OH686_21155at 4334.884 kb on - strand, within OH686_21155at 4334.884 kb on - strand, within OH686_21155at 4334.884 kb on - strand, within OH686_21155at 4334.884 kb on - strand, within OH686_21155at 4335.042 kb on + strandat 4335.042 kb on + strandat 4335.042 kb on + strandat 4335.042 kb on + strandat 4335.113 kb on + strand, within OH686_21160at 4335.113 kb on + strand, within OH686_21160at 4335.113 kb on + strand, within OH686_21160at 4335.113 kb on + strand, within OH686_21160at 4335.113 kb on + strand, within OH686_21160at 4335.113 kb on + strand, within OH686_21160at 4335.114 kb on - strand, within OH686_21160at 4335.114 kb on - strand, within OH686_21160at 4335.114 kb on - strand, within OH686_21160at 4335.114 kb on - strand, within OH686_21160at 4335.446 kb on + strandat 4335.474 kb on + strandat 4335.475 kb on - strandat 4335.475 kb on - strandat 4335.475 kb on - strandat 4335.516 kb on + strand, within OH686_21165at 4335.516 kb on + strand, within OH686_21165at 4335.516 kb on + strand, within OH686_21165at 4335.516 kb on + strand, within OH686_21165at 4335.517 kb on - strand, within OH686_21165at 4335.517 kb on - strand, within OH686_21165at 4335.676 kb on - strand, within OH686_21165at 4335.676 kb on - strand, within OH686_21165at 4335.676 kb on - strand, within OH686_21165at 4335.932 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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4,333,894 + OH686_21145 0.89 -1.3
4,333,895 - OH686_21145 0.89 +0.2
4,334,121 - -1.0
4,334,244 + OH686_21150 0.22 -1.8
4,334,244 + OH686_21150 0.22 -0.4
4,334,245 - OH686_21150 0.22 +0.0
4,334,419 + OH686_21150 0.47 -0.5
4,334,419 + OH686_21150 0.47 +0.3
4,334,420 - OH686_21150 0.47 +0.3
4,334,487 + OH686_21150 0.56 +0.3
4,334,869 + OH686_21155 0.15 +0.5
4,334,883 + OH686_21155 0.27 -0.2
4,334,884 - OH686_21155 0.28 -0.4
4,334,884 - OH686_21155 0.28 +0.1
4,334,884 - OH686_21155 0.28 +0.3
4,334,884 - OH686_21155 0.28 -0.6
4,334,884 - OH686_21155 0.28 -0.4
4,334,884 - OH686_21155 0.28 +0.1
4,334,884 - OH686_21155 0.28 -0.7
4,335,042 + -0.0
4,335,042 + +1.1
4,335,042 + -0.2
4,335,042 + -0.4
4,335,113 + OH686_21160 0.21 -0.7
4,335,113 + OH686_21160 0.21 +0.7
4,335,113 + OH686_21160 0.21 -0.4
4,335,113 + OH686_21160 0.21 +0.4
4,335,113 + OH686_21160 0.21 -0.1
4,335,113 + OH686_21160 0.21 -0.5
4,335,114 - OH686_21160 0.21 -0.7
4,335,114 - OH686_21160 0.21 -0.7
4,335,114 - OH686_21160 0.21 -0.8
4,335,114 - OH686_21160 0.21 -0.5
4,335,446 + +0.3
4,335,474 + -0.4
4,335,475 - -1.3
4,335,475 - -0.4
4,335,475 - +0.0
4,335,516 + OH686_21165 0.13 +0.2
4,335,516 + OH686_21165 0.13 -0.1
4,335,516 + OH686_21165 0.13 +0.1
4,335,516 + OH686_21165 0.13 -0.3
4,335,517 - OH686_21165 0.14 -1.0
4,335,517 - OH686_21165 0.14 -0.4
4,335,676 - OH686_21165 0.51 +0.1
4,335,676 - OH686_21165 0.51 +0.3
4,335,676 - OH686_21165 0.51 -0.7
4,335,932 - -0.3

Or see this region's nucleotide sequence