Strain Fitness in Pseudomonas sp. S08-1 around OH686_20395

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_20390 and OH686_20395 are separated by 349 nucleotidesOH686_20395 and OH686_20400 are separated by 103 nucleotides OH686_20390: OH686_20390 - hypothetical protein, at 4,163,873 to 4,165,123 _20390 OH686_20395: OH686_20395 - Phenazine biosynthesis protein PhzF like, at 4,165,473 to 4,166,252 _20395 OH686_20400: OH686_20400 - Ferric iron ABC transporter, ATP-binding protein, at 4,166,356 to 4,167,459 _20400 Position (kb) 4165 4166 4167Strain fitness (log2 ratio) -2 -1 0 1 2at 4164.501 kb on + strand, within OH686_20390at 4164.501 kb on + strand, within OH686_20390at 4164.501 kb on + strand, within OH686_20390at 4164.501 kb on + strand, within OH686_20390at 4164.501 kb on + strand, within OH686_20390at 4164.502 kb on - strand, within OH686_20390at 4164.502 kb on - strand, within OH686_20390at 4164.502 kb on - strand, within OH686_20390at 4164.502 kb on - strand, within OH686_20390at 4164.502 kb on - strand, within OH686_20390at 4164.502 kb on - strand, within OH686_20390at 4164.561 kb on + strand, within OH686_20390at 4164.562 kb on - strand, within OH686_20390at 4164.606 kb on + strand, within OH686_20390at 4164.606 kb on + strand, within OH686_20390at 4164.606 kb on + strand, within OH686_20390at 4164.606 kb on + strand, within OH686_20390at 4164.606 kb on + strand, within OH686_20390at 4164.607 kb on - strand, within OH686_20390at 4164.607 kb on - strand, within OH686_20390at 4164.607 kb on - strand, within OH686_20390at 4164.607 kb on - strand, within OH686_20390at 4164.612 kb on + strand, within OH686_20390at 4164.612 kb on + strand, within OH686_20390at 4164.612 kb on + strand, within OH686_20390at 4164.612 kb on + strand, within OH686_20390at 4164.612 kb on + strand, within OH686_20390at 4164.613 kb on - strand, within OH686_20390at 4164.613 kb on - strand, within OH686_20390at 4164.613 kb on - strand, within OH686_20390at 4164.613 kb on - strand, within OH686_20390at 4164.613 kb on - strand, within OH686_20390at 4164.613 kb on - strand, within OH686_20390at 4164.663 kb on + strand, within OH686_20390at 4164.663 kb on + strand, within OH686_20390at 4164.664 kb on - strand, within OH686_20390at 4164.664 kb on - strand, within OH686_20390at 4164.664 kb on - strand, within OH686_20390at 4164.765 kb on + strand, within OH686_20390at 4164.765 kb on + strand, within OH686_20390at 4164.847 kb on + strand, within OH686_20390at 4164.849 kb on + strand, within OH686_20390at 4164.849 kb on + strand, within OH686_20390at 4164.849 kb on + strand, within OH686_20390at 4164.850 kb on - strand, within OH686_20390at 4164.850 kb on - strand, within OH686_20390at 4164.850 kb on - strand, within OH686_20390at 4164.850 kb on - strand, within OH686_20390at 4164.850 kb on - strand, within OH686_20390at 4164.850 kb on - strand, within OH686_20390at 4164.850 kb on - strand, within OH686_20390at 4164.907 kb on - strand, within OH686_20390at 4164.907 kb on - strand, within OH686_20390at 4165.103 kb on + strandat 4165.103 kb on + strandat 4165.103 kb on + strandat 4165.103 kb on + strandat 4165.103 kb on + strandat 4165.104 kb on - strandat 4165.104 kb on - strandat 4165.104 kb on - strandat 4165.104 kb on - strandat 4165.104 kb on - strandat 4165.104 kb on - strandat 4165.104 kb on - strandat 4165.147 kb on + strandat 4165.147 kb on + strandat 4165.147 kb on + strandat 4165.147 kb on + strandat 4165.148 kb on - strandat 4165.148 kb on - strandat 4165.148 kb on - strandat 4165.307 kb on - strandat 4165.313 kb on + strandat 4165.317 kb on + strandat 4165.382 kb on + strandat 4165.382 kb on + strandat 4165.382 kb on + strandat 4165.382 kb on + strandat 4165.383 kb on - strandat 4165.543 kb on - strandat 4165.728 kb on + strand, within OH686_20395at 4165.728 kb on + strand, within OH686_20395at 4165.728 kb on + strand, within OH686_20395at 4165.728 kb on + strand, within OH686_20395at 4165.728 kb on + strand, within OH686_20395at 4165.728 kb on + strand, within OH686_20395at 4165.728 kb on + strand, within OH686_20395at 4165.728 kb on + strand, within OH686_20395at 4165.728 kb on + strand, within OH686_20395at 4165.728 kb on + strand, within OH686_20395at 4165.729 kb on - strand, within OH686_20395at 4165.729 kb on - strand, within OH686_20395at 4165.729 kb on - strand, within OH686_20395at 4165.729 kb on - strand, within OH686_20395at 4165.729 kb on - strand, within OH686_20395at 4165.882 kb on + strand, within OH686_20395at 4165.883 kb on - strand, within OH686_20395at 4165.883 kb on - strand, within OH686_20395at 4166.037 kb on + strand, within OH686_20395at 4166.038 kb on - strand, within OH686_20395at 4166.038 kb on - strand, within OH686_20395at 4166.127 kb on - strand, within OH686_20395at 4166.250 kb on + strandat 4166.260 kb on + strandat 4166.261 kb on - strandat 4166.314 kb on + strandat 4166.315 kb on - strandat 4166.431 kb on + strandat 4166.432 kb on - strandat 4166.464 kb on + strandat 4166.464 kb on + strandat 4166.465 kb on - strandat 4166.465 kb on - strandat 4166.465 kb on - strandat 4166.465 kb on - strandat 4166.530 kb on + strand, within OH686_20400at 4166.531 kb on - strand, within OH686_20400at 4166.531 kb on - strand, within OH686_20400at 4166.609 kb on + strand, within OH686_20400at 4166.609 kb on + strand, within OH686_20400at 4166.609 kb on + strand, within OH686_20400at 4166.609 kb on + strand, within OH686_20400at 4166.609 kb on + strand, within OH686_20400at 4166.609 kb on + strand, within OH686_20400at 4166.609 kb on + strand, within OH686_20400at 4166.610 kb on - strand, within OH686_20400at 4166.610 kb on - strand, within OH686_20400at 4166.610 kb on - strand, within OH686_20400at 4166.610 kb on - strand, within OH686_20400at 4166.610 kb on - strand, within OH686_20400at 4166.610 kb on - strand, within OH686_20400at 4166.610 kb on - strand, within OH686_20400at 4166.610 kb on - strand, within OH686_20400at 4166.610 kb on - strand, within OH686_20400at 4166.610 kb on - strand, within OH686_20400at 4166.610 kb on - strand, within OH686_20400at 4166.610 kb on - strand, within OH686_20400at 4166.610 kb on - strand, within OH686_20400at 4166.667 kb on - strand, within OH686_20400at 4166.667 kb on - strand, within OH686_20400at 4166.667 kb on - strand, within OH686_20400at 4166.667 kb on - strand, within OH686_20400at 4166.667 kb on - strand, within OH686_20400at 4166.741 kb on + strand, within OH686_20400at 4166.741 kb on + strand, within OH686_20400at 4166.741 kb on + strand, within OH686_20400at 4166.741 kb on + strand, within OH686_20400at 4166.741 kb on + strand, within OH686_20400at 4166.741 kb on + strand, within OH686_20400at 4166.741 kb on + strand, within OH686_20400at 4166.742 kb on - strand, within OH686_20400at 4166.742 kb on - strand, within OH686_20400at 4166.742 kb on - strand, within OH686_20400at 4166.789 kb on + strand, within OH686_20400at 4166.789 kb on + strand, within OH686_20400at 4166.789 kb on + strand, within OH686_20400at 4166.790 kb on - strand, within OH686_20400at 4166.790 kb on - strand, within OH686_20400at 4166.798 kb on + strand, within OH686_20400at 4166.798 kb on + strand, within OH686_20400at 4166.798 kb on + strand, within OH686_20400at 4166.798 kb on + strand, within OH686_20400at 4166.798 kb on + strand, within OH686_20400at 4166.798 kb on + strand, within OH686_20400at 4166.798 kb on + strand, within OH686_20400at 4166.798 kb on + strand, within OH686_20400at 4166.798 kb on + strand, within OH686_20400at 4166.799 kb on - strand, within OH686_20400at 4166.799 kb on - strand, within OH686_20400at 4166.799 kb on - strand, within OH686_20400at 4166.799 kb on - strand, within OH686_20400at 4166.799 kb on - strand, within OH686_20400at 4166.799 kb on - strand, within OH686_20400at 4166.799 kb on - strand, within OH686_20400at 4166.799 kb on - strand, within OH686_20400at 4167.191 kb on + strand, within OH686_20400at 4167.191 kb on + strand, within OH686_20400at 4167.192 kb on - strand, within OH686_20400at 4167.192 kb on - strand, within OH686_20400at 4167.192 kb on - strand, within OH686_20400at 4167.192 kb on - strand, within OH686_20400

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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4,164,501 + OH686_20390 0.50 -0.2
4,164,501 + OH686_20390 0.50 +0.2
4,164,501 + OH686_20390 0.50 -0.4
4,164,501 + OH686_20390 0.50 -0.1
4,164,501 + OH686_20390 0.50 +1.0
4,164,502 - OH686_20390 0.50 +0.2
4,164,502 - OH686_20390 0.50 +0.7
4,164,502 - OH686_20390 0.50 -0.3
4,164,502 - OH686_20390 0.50 +0.3
4,164,502 - OH686_20390 0.50 -0.1
4,164,502 - OH686_20390 0.50 -1.2
4,164,561 + OH686_20390 0.55 -0.4
4,164,562 - OH686_20390 0.55 +2.2
4,164,606 + OH686_20390 0.59 -0.5
4,164,606 + OH686_20390 0.59 +0.2
4,164,606 + OH686_20390 0.59 -1.0
4,164,606 + OH686_20390 0.59 +0.9
4,164,606 + OH686_20390 0.59 -0.7
4,164,607 - OH686_20390 0.59 -0.7
4,164,607 - OH686_20390 0.59 -0.1
4,164,607 - OH686_20390 0.59 +1.0
4,164,607 - OH686_20390 0.59 +1.4
4,164,612 + OH686_20390 0.59 +0.3
4,164,612 + OH686_20390 0.59 -0.5
4,164,612 + OH686_20390 0.59 +0.6
4,164,612 + OH686_20390 0.59 +0.6
4,164,612 + OH686_20390 0.59 -0.2
4,164,613 - OH686_20390 0.59 -0.3
4,164,613 - OH686_20390 0.59 +0.3
4,164,613 - OH686_20390 0.59 +0.9
4,164,613 - OH686_20390 0.59 +1.1
4,164,613 - OH686_20390 0.59 +0.2
4,164,613 - OH686_20390 0.59 -1.1
4,164,663 + OH686_20390 0.63 -0.3
4,164,663 + OH686_20390 0.63 -0.1
4,164,664 - OH686_20390 0.63 +0.7
4,164,664 - OH686_20390 0.63 -0.1
4,164,664 - OH686_20390 0.63 -0.6
4,164,765 + OH686_20390 0.71 +0.4
4,164,765 + OH686_20390 0.71 +0.6
4,164,847 + OH686_20390 0.78 +0.6
4,164,849 + OH686_20390 0.78 -0.2
4,164,849 + OH686_20390 0.78 +1.3
4,164,849 + OH686_20390 0.78 -0.4
4,164,850 - OH686_20390 0.78 -0.0
4,164,850 - OH686_20390 0.78 +0.8
4,164,850 - OH686_20390 0.78 -0.1
4,164,850 - OH686_20390 0.78 +1.2
4,164,850 - OH686_20390 0.78 +0.1
4,164,850 - OH686_20390 0.78 +0.7
4,164,850 - OH686_20390 0.78 +0.4
4,164,907 - OH686_20390 0.83 -0.1
4,164,907 - OH686_20390 0.83 -1.7
4,165,103 + -1.8
4,165,103 + +0.3
4,165,103 + -0.2
4,165,103 + -0.7
4,165,103 + -0.7
4,165,104 - -0.2
4,165,104 - +0.1
4,165,104 - +0.5
4,165,104 - -0.2
4,165,104 - -0.4
4,165,104 - -2.6
4,165,104 - +0.7
4,165,147 + +0.4
4,165,147 + -0.2
4,165,147 + -0.6
4,165,147 + +0.2
4,165,148 - +0.1
4,165,148 - +0.1
4,165,148 - -0.2
4,165,307 - -0.1
4,165,313 + -0.4
4,165,317 + +0.8
4,165,382 + -1.2
4,165,382 + -0.1
4,165,382 + -0.9
4,165,382 + -1.7
4,165,383 - +0.3
4,165,543 - -0.1
4,165,728 + OH686_20395 0.33 +0.2
4,165,728 + OH686_20395 0.33 -0.4
4,165,728 + OH686_20395 0.33 +0.7
4,165,728 + OH686_20395 0.33 -0.9
4,165,728 + OH686_20395 0.33 -0.7
4,165,728 + OH686_20395 0.33 +0.5
4,165,728 + OH686_20395 0.33 +0.7
4,165,728 + OH686_20395 0.33 +0.2
4,165,728 + OH686_20395 0.33 -0.3
4,165,728 + OH686_20395 0.33 -0.6
4,165,729 - OH686_20395 0.33 +0.5
4,165,729 - OH686_20395 0.33 -0.6
4,165,729 - OH686_20395 0.33 -0.3
4,165,729 - OH686_20395 0.33 -0.9
4,165,729 - OH686_20395 0.33 -0.5
4,165,882 + OH686_20395 0.52 -0.8
4,165,883 - OH686_20395 0.53 -0.1
4,165,883 - OH686_20395 0.53 +0.1
4,166,037 + OH686_20395 0.72 +0.3
4,166,038 - OH686_20395 0.72 -0.2
4,166,038 - OH686_20395 0.72 +0.6
4,166,127 - OH686_20395 0.84 +0.1
4,166,250 + +0.4
4,166,260 + +0.2
4,166,261 - +0.9
4,166,314 + +0.1
4,166,315 - -0.6
4,166,431 + -1.3
4,166,432 - -0.1
4,166,464 + +0.1
4,166,464 + -1.1
4,166,465 - -1.0
4,166,465 - +0.9
4,166,465 - -0.1
4,166,465 - +0.5
4,166,530 + OH686_20400 0.16 -0.4
4,166,531 - OH686_20400 0.16 -0.8
4,166,531 - OH686_20400 0.16 +0.1
4,166,609 + OH686_20400 0.23 -0.9
4,166,609 + OH686_20400 0.23 -0.8
4,166,609 + OH686_20400 0.23 -0.2
4,166,609 + OH686_20400 0.23 -0.5
4,166,609 + OH686_20400 0.23 -0.3
4,166,609 + OH686_20400 0.23 -0.5
4,166,609 + OH686_20400 0.23 -0.2
4,166,610 - OH686_20400 0.23 -0.5
4,166,610 - OH686_20400 0.23 -0.2
4,166,610 - OH686_20400 0.23 -0.2
4,166,610 - OH686_20400 0.23 -0.5
4,166,610 - OH686_20400 0.23 +0.3
4,166,610 - OH686_20400 0.23 -0.4
4,166,610 - OH686_20400 0.23 -0.6
4,166,610 - OH686_20400 0.23 -1.4
4,166,610 - OH686_20400 0.23 +0.4
4,166,610 - OH686_20400 0.23 +1.1
4,166,610 - OH686_20400 0.23 -0.9
4,166,610 - OH686_20400 0.23 -1.8
4,166,610 - OH686_20400 0.23 +0.1
4,166,667 - OH686_20400 0.28 -1.6
4,166,667 - OH686_20400 0.28 -0.7
4,166,667 - OH686_20400 0.28 +0.2
4,166,667 - OH686_20400 0.28 -0.2
4,166,667 - OH686_20400 0.28 -0.0
4,166,741 + OH686_20400 0.35 -1.1
4,166,741 + OH686_20400 0.35 -0.4
4,166,741 + OH686_20400 0.35 +0.1
4,166,741 + OH686_20400 0.35 +1.2
4,166,741 + OH686_20400 0.35 -0.1
4,166,741 + OH686_20400 0.35 +0.2
4,166,741 + OH686_20400 0.35 -0.7
4,166,742 - OH686_20400 0.35 -0.7
4,166,742 - OH686_20400 0.35 -0.0
4,166,742 - OH686_20400 0.35 -0.6
4,166,789 + OH686_20400 0.39 -0.4
4,166,789 + OH686_20400 0.39 -1.0
4,166,789 + OH686_20400 0.39 -0.7
4,166,790 - OH686_20400 0.39 -0.2
4,166,790 - OH686_20400 0.39 -0.1
4,166,798 + OH686_20400 0.40 -0.3
4,166,798 + OH686_20400 0.40 +0.4
4,166,798 + OH686_20400 0.40 +0.7
4,166,798 + OH686_20400 0.40 -0.0
4,166,798 + OH686_20400 0.40 -0.4
4,166,798 + OH686_20400 0.40 -1.0
4,166,798 + OH686_20400 0.40 -1.3
4,166,798 + OH686_20400 0.40 -0.7
4,166,798 + OH686_20400 0.40 -1.0
4,166,799 - OH686_20400 0.40 -1.5
4,166,799 - OH686_20400 0.40 +0.5
4,166,799 - OH686_20400 0.40 -1.1
4,166,799 - OH686_20400 0.40 -0.0
4,166,799 - OH686_20400 0.40 -2.5
4,166,799 - OH686_20400 0.40 +1.1
4,166,799 - OH686_20400 0.40 -0.3
4,166,799 - OH686_20400 0.40 -0.6
4,167,191 + OH686_20400 0.76 -0.8
4,167,191 + OH686_20400 0.76 +0.1
4,167,192 - OH686_20400 0.76 +0.5
4,167,192 - OH686_20400 0.76 -0.2
4,167,192 - OH686_20400 0.76 -1.6
4,167,192 - OH686_20400 0.76 -0.0

Or see this region's nucleotide sequence