Strain Fitness in Pseudomonas sp. S08-1 around OH686_12785

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_12780 and OH686_12785 are separated by 6 nucleotidesOH686_12785 and OH686_12790 are separated by 2 nucleotides OH686_12780: OH686_12780 - T6SS component TssM (IcmF/VasK), at 2,686,285 to 2,689,806 _12780 OH686_12785: OH686_12785 - T6SS outer membrane component TssL (ImpK/VasF), at 2,689,813 to 2,690,679 _12785 OH686_12790: OH686_12790 - T6SS component TssK (ImpJ/VasE), at 2,690,682 to 2,692,013 _12790 Position (kb) 2689 2690 2691Strain fitness (log2 ratio) -2 -1 0 1 2at 2689.013 kb on + strand, within OH686_12780at 2689.013 kb on + strand, within OH686_12780at 2689.013 kb on + strand, within OH686_12780at 2689.013 kb on + strand, within OH686_12780at 2689.014 kb on - strand, within OH686_12780at 2689.106 kb on + strand, within OH686_12780at 2689.106 kb on + strand, within OH686_12780at 2689.106 kb on + strand, within OH686_12780at 2689.107 kb on - strand, within OH686_12780at 2689.107 kb on - strand, within OH686_12780at 2689.107 kb on - strand, within OH686_12780at 2689.107 kb on - strand, within OH686_12780at 2689.107 kb on - strand, within OH686_12780at 2689.107 kb on - strand, within OH686_12780at 2689.274 kb on + strand, within OH686_12780at 2689.274 kb on + strand, within OH686_12780at 2689.274 kb on + strand, within OH686_12780at 2689.274 kb on + strand, within OH686_12780at 2689.275 kb on - strand, within OH686_12780at 2689.275 kb on - strand, within OH686_12780at 2689.275 kb on - strand, within OH686_12780at 2689.406 kb on + strand, within OH686_12780at 2689.406 kb on + strand, within OH686_12780at 2689.406 kb on + strand, within OH686_12780at 2689.406 kb on + strand, within OH686_12780at 2689.406 kb on + strand, within OH686_12780at 2689.406 kb on + strand, within OH686_12780at 2689.407 kb on - strand, within OH686_12780at 2689.862 kb on + strandat 2689.862 kb on + strandat 2689.862 kb on + strandat 2689.862 kb on + strandat 2689.862 kb on + strandat 2689.862 kb on + strandat 2689.863 kb on - strandat 2689.863 kb on - strandat 2689.863 kb on - strandat 2689.916 kb on + strand, within OH686_12785at 2689.916 kb on + strand, within OH686_12785at 2689.916 kb on + strand, within OH686_12785at 2689.917 kb on - strand, within OH686_12785at 2689.917 kb on - strand, within OH686_12785at 2689.927 kb on + strand, within OH686_12785at 2690.117 kb on + strand, within OH686_12785at 2690.117 kb on + strand, within OH686_12785at 2690.118 kb on - strand, within OH686_12785at 2690.118 kb on - strand, within OH686_12785at 2690.118 kb on - strand, within OH686_12785at 2690.118 kb on - strand, within OH686_12785at 2690.118 kb on - strand, within OH686_12785at 2690.118 kb on - strand, within OH686_12785at 2690.150 kb on + strand, within OH686_12785at 2690.150 kb on + strand, within OH686_12785at 2690.150 kb on + strand, within OH686_12785at 2690.150 kb on + strand, within OH686_12785at 2690.150 kb on + strand, within OH686_12785at 2690.150 kb on + strand, within OH686_12785at 2690.150 kb on + strand, within OH686_12785at 2690.150 kb on + strand, within OH686_12785at 2690.150 kb on + strand, within OH686_12785at 2690.150 kb on + strand, within OH686_12785at 2690.150 kb on + strand, within OH686_12785at 2690.150 kb on + strand, within OH686_12785at 2690.150 kb on + strand, within OH686_12785at 2690.150 kb on + strand, within OH686_12785at 2690.150 kb on + strand, within OH686_12785at 2690.150 kb on + strand, within OH686_12785at 2690.150 kb on + strand, within OH686_12785at 2690.150 kb on + strand, within OH686_12785at 2690.150 kb on + strand, within OH686_12785at 2690.150 kb on + strand, within OH686_12785at 2690.150 kb on + strand, within OH686_12785at 2690.150 kb on + strand, within OH686_12785at 2690.150 kb on + strand, within OH686_12785at 2690.150 kb on + strand, within OH686_12785at 2690.151 kb on - strand, within OH686_12785at 2690.151 kb on - strand, within OH686_12785at 2690.151 kb on - strand, within OH686_12785at 2690.151 kb on - strand, within OH686_12785at 2690.151 kb on - strand, within OH686_12785at 2690.151 kb on - strand, within OH686_12785at 2690.151 kb on - strand, within OH686_12785at 2690.151 kb on - strand, within OH686_12785at 2690.151 kb on - strand, within OH686_12785at 2690.151 kb on - strand, within OH686_12785at 2690.151 kb on - strand, within OH686_12785at 2690.151 kb on - strand, within OH686_12785at 2690.151 kb on - strand, within OH686_12785at 2690.151 kb on - strand, within OH686_12785at 2690.151 kb on - strand, within OH686_12785at 2690.151 kb on - strand, within OH686_12785at 2690.151 kb on - strand, within OH686_12785at 2690.151 kb on - strand, within OH686_12785at 2690.151 kb on - strand, within OH686_12785at 2690.336 kb on + strand, within OH686_12785at 2690.336 kb on + strand, within OH686_12785at 2690.337 kb on - strand, within OH686_12785at 2690.337 kb on - strand, within OH686_12785at 2690.555 kb on + strand, within OH686_12785at 2690.555 kb on + strand, within OH686_12785at 2690.556 kb on - strand, within OH686_12785at 2690.556 kb on - strand, within OH686_12785at 2690.803 kb on + strandat 2690.803 kb on + strandat 2690.803 kb on + strandat 2690.803 kb on + strandat 2690.804 kb on - strandat 2690.804 kb on - strandat 2690.804 kb on - strandat 2690.804 kb on - strandat 2690.804 kb on - strandat 2690.804 kb on - strandat 2690.804 kb on - strandat 2690.804 kb on - strandat 2690.804 kb on - strandat 2690.804 kb on - strandat 2691.265 kb on + strand, within OH686_12790at 2691.265 kb on + strand, within OH686_12790at 2691.265 kb on + strand, within OH686_12790at 2691.265 kb on + strand, within OH686_12790at 2691.266 kb on - strand, within OH686_12790at 2691.266 kb on - strand, within OH686_12790at 2691.266 kb on - strand, within OH686_12790at 2691.266 kb on - strand, within OH686_12790at 2691.266 kb on - strand, within OH686_12790at 2691.266 kb on - strand, within OH686_12790at 2691.286 kb on + strand, within OH686_12790at 2691.308 kb on + strand, within OH686_12790at 2691.308 kb on + strand, within OH686_12790at 2691.308 kb on + strand, within OH686_12790at 2691.308 kb on + strand, within OH686_12790at 2691.308 kb on + strand, within OH686_12790at 2691.308 kb on + strand, within OH686_12790at 2691.308 kb on + strand, within OH686_12790at 2691.308 kb on + strand, within OH686_12790at 2691.308 kb on + strand, within OH686_12790at 2691.308 kb on + strand, within OH686_12790at 2691.308 kb on + strand, within OH686_12790at 2691.309 kb on - strand, within OH686_12790at 2691.309 kb on - strand, within OH686_12790at 2691.309 kb on - strand, within OH686_12790at 2691.309 kb on - strand, within OH686_12790at 2691.309 kb on - strand, within OH686_12790at 2691.309 kb on - strand, within OH686_12790at 2691.424 kb on + strand, within OH686_12790at 2691.424 kb on + strand, within OH686_12790at 2691.424 kb on + strand, within OH686_12790at 2691.424 kb on + strand, within OH686_12790at 2691.424 kb on + strand, within OH686_12790at 2691.425 kb on - strand, within OH686_12790at 2691.425 kb on - strand, within OH686_12790at 2691.425 kb on - strand, within OH686_12790at 2691.425 kb on - strand, within OH686_12790

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,689,013 + OH686_12780 0.77 -0.1
2,689,013 + OH686_12780 0.77 -0.2
2,689,013 + OH686_12780 0.77 -0.1
2,689,013 + OH686_12780 0.77 -0.6
2,689,014 - OH686_12780 0.77 -0.1
2,689,106 + OH686_12780 0.80 +1.0
2,689,106 + OH686_12780 0.80 -1.6
2,689,106 + OH686_12780 0.80 +0.0
2,689,107 - OH686_12780 0.80 +1.1
2,689,107 - OH686_12780 0.80 +0.1
2,689,107 - OH686_12780 0.80 +0.1
2,689,107 - OH686_12780 0.80 -0.3
2,689,107 - OH686_12780 0.80 +1.3
2,689,107 - OH686_12780 0.80 +0.6
2,689,274 + OH686_12780 0.85 -0.3
2,689,274 + OH686_12780 0.85 +0.8
2,689,274 + OH686_12780 0.85 -0.1
2,689,274 + OH686_12780 0.85 +2.1
2,689,275 - OH686_12780 0.85 +0.7
2,689,275 - OH686_12780 0.85 +0.0
2,689,275 - OH686_12780 0.85 +0.1
2,689,406 + OH686_12780 0.89 +0.0
2,689,406 + OH686_12780 0.89 -0.6
2,689,406 + OH686_12780 0.89 -0.0
2,689,406 + OH686_12780 0.89 -1.3
2,689,406 + OH686_12780 0.89 -0.5
2,689,406 + OH686_12780 0.89 +0.1
2,689,407 - OH686_12780 0.89 -0.6
2,689,862 + -1.1
2,689,862 + -0.4
2,689,862 + +0.8
2,689,862 + +0.2
2,689,862 + +0.3
2,689,862 + +0.1
2,689,863 - -0.5
2,689,863 - -0.7
2,689,863 - -0.4
2,689,916 + OH686_12785 0.12 -0.6
2,689,916 + OH686_12785 0.12 +0.3
2,689,916 + OH686_12785 0.12 -0.2
2,689,917 - OH686_12785 0.12 +0.6
2,689,917 - OH686_12785 0.12 +0.2
2,689,927 + OH686_12785 0.13 +0.7
2,690,117 + OH686_12785 0.35 +0.2
2,690,117 + OH686_12785 0.35 -0.0
2,690,118 - OH686_12785 0.35 +0.6
2,690,118 - OH686_12785 0.35 -0.1
2,690,118 - OH686_12785 0.35 -2.1
2,690,118 - OH686_12785 0.35 +0.4
2,690,118 - OH686_12785 0.35 +0.6
2,690,118 - OH686_12785 0.35 +1.0
2,690,150 + OH686_12785 0.39 -0.8
2,690,150 + OH686_12785 0.39 +0.1
2,690,150 + OH686_12785 0.39 +0.7
2,690,150 + OH686_12785 0.39 -0.3
2,690,150 + OH686_12785 0.39 -0.5
2,690,150 + OH686_12785 0.39 +0.5
2,690,150 + OH686_12785 0.39 -0.8
2,690,150 + OH686_12785 0.39 -1.2
2,690,150 + OH686_12785 0.39 -0.5
2,690,150 + OH686_12785 0.39 +0.1
2,690,150 + OH686_12785 0.39 -1.2
2,690,150 + OH686_12785 0.39 +0.2
2,690,150 + OH686_12785 0.39 -0.3
2,690,150 + OH686_12785 0.39 -1.1
2,690,150 + OH686_12785 0.39 +0.1
2,690,150 + OH686_12785 0.39 +0.3
2,690,150 + OH686_12785 0.39 +1.2
2,690,150 + OH686_12785 0.39 +0.3
2,690,150 + OH686_12785 0.39 +0.1
2,690,150 + OH686_12785 0.39 +0.3
2,690,150 + OH686_12785 0.39 -0.0
2,690,150 + OH686_12785 0.39 -0.1
2,690,150 + OH686_12785 0.39 +0.0
2,690,150 + OH686_12785 0.39 -0.2
2,690,151 - OH686_12785 0.39 -0.3
2,690,151 - OH686_12785 0.39 +0.6
2,690,151 - OH686_12785 0.39 -0.0
2,690,151 - OH686_12785 0.39 -0.6
2,690,151 - OH686_12785 0.39 +0.7
2,690,151 - OH686_12785 0.39 +1.2
2,690,151 - OH686_12785 0.39 +0.6
2,690,151 - OH686_12785 0.39 +0.0
2,690,151 - OH686_12785 0.39 -2.1
2,690,151 - OH686_12785 0.39 -1.8
2,690,151 - OH686_12785 0.39 +0.5
2,690,151 - OH686_12785 0.39 +0.2
2,690,151 - OH686_12785 0.39 -0.3
2,690,151 - OH686_12785 0.39 -0.6
2,690,151 - OH686_12785 0.39 -0.3
2,690,151 - OH686_12785 0.39 +0.2
2,690,151 - OH686_12785 0.39 -0.1
2,690,151 - OH686_12785 0.39 -0.4
2,690,151 - OH686_12785 0.39 -0.5
2,690,336 + OH686_12785 0.60 +0.1
2,690,336 + OH686_12785 0.60 +0.3
2,690,337 - OH686_12785 0.60 -0.7
2,690,337 - OH686_12785 0.60 +0.8
2,690,555 + OH686_12785 0.86 +0.7
2,690,555 + OH686_12785 0.86 -0.2
2,690,556 - OH686_12785 0.86 -0.3
2,690,556 - OH686_12785 0.86 -0.5
2,690,803 + -0.4
2,690,803 + +0.7
2,690,803 + -0.2
2,690,803 + -0.4
2,690,804 - -1.8
2,690,804 - -0.3
2,690,804 - -0.2
2,690,804 - +0.2
2,690,804 - -0.3
2,690,804 - +0.0
2,690,804 - +0.5
2,690,804 - -1.2
2,690,804 - +1.1
2,690,804 - +0.5
2,691,265 + OH686_12790 0.44 -0.5
2,691,265 + OH686_12790 0.44 -2.2
2,691,265 + OH686_12790 0.44 +0.1
2,691,265 + OH686_12790 0.44 -0.7
2,691,266 - OH686_12790 0.44 -0.7
2,691,266 - OH686_12790 0.44 -0.1
2,691,266 - OH686_12790 0.44 +0.8
2,691,266 - OH686_12790 0.44 -0.3
2,691,266 - OH686_12790 0.44 -0.0
2,691,266 - OH686_12790 0.44 +0.2
2,691,286 + OH686_12790 0.45 +0.4
2,691,308 + OH686_12790 0.47 -0.2
2,691,308 + OH686_12790 0.47 -0.5
2,691,308 + OH686_12790 0.47 -0.3
2,691,308 + OH686_12790 0.47 +0.1
2,691,308 + OH686_12790 0.47 -0.7
2,691,308 + OH686_12790 0.47 -0.6
2,691,308 + OH686_12790 0.47 -0.1
2,691,308 + OH686_12790 0.47 +0.3
2,691,308 + OH686_12790 0.47 +0.2
2,691,308 + OH686_12790 0.47 -0.4
2,691,308 + OH686_12790 0.47 -0.1
2,691,309 - OH686_12790 0.47 -0.2
2,691,309 - OH686_12790 0.47 -0.5
2,691,309 - OH686_12790 0.47 +0.6
2,691,309 - OH686_12790 0.47 +0.8
2,691,309 - OH686_12790 0.47 -0.0
2,691,309 - OH686_12790 0.47 -0.5
2,691,424 + OH686_12790 0.56 +0.3
2,691,424 + OH686_12790 0.56 -0.6
2,691,424 + OH686_12790 0.56 -0.3
2,691,424 + OH686_12790 0.56 +0.5
2,691,424 + OH686_12790 0.56 -0.1
2,691,425 - OH686_12790 0.56 -0.0
2,691,425 - OH686_12790 0.56 -0.0
2,691,425 - OH686_12790 0.56 -1.3
2,691,425 - OH686_12790 0.56 -0.0

Or see this region's nucleotide sequence