Strain Fitness in Pseudomonas sp. S08-1 around OH686_12675

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_12665 and OH686_12670 are separated by 12 nucleotidesOH686_12670 and OH686_12675 are separated by 170 nucleotidesOH686_12675 and OH686_12680 are separated by 154 nucleotidesOH686_12680 and OH686_12685 are separated by 16 nucleotides OH686_12665: OH686_12665 - 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG, at 2,663,590 to 2,664,237 _12665 OH686_12670: OH686_12670 - Chromosome (plasmid) partitioning protein ParA, at 2,664,250 to 2,665,038 _12670 OH686_12675: OH686_12675 - Chromosome (plasmid) partitioning protein ParB, at 2,665,209 to 2,665,919 _12675 OH686_12680: OH686_12680 - ATP synthase protein I, at 2,666,074 to 2,666,481 _12680 OH686_12685: OH686_12685 - ATP synthase F0, A subunit, at 2,666,498 to 2,667,367 _12685 Position (kb) 2665 2666Strain fitness (log2 ratio) -1 0 1at 2664.218 kb on + strandat 2664.219 kb on - strandat 2664.235 kb on + strandat 2664.874 kb on + strand, within OH686_12670at 2665.037 kb on - strandat 2665.191 kb on + strandat 2665.192 kb on - strandat 2665.192 kb on - strandat 2665.814 kb on - strand, within OH686_12675at 2665.814 kb on - strand, within OH686_12675at 2665.872 kb on + strandat 2665.873 kb on - strandat 2665.942 kb on + strandat 2665.942 kb on + strandat 2665.942 kb on + strandat 2665.943 kb on - strandat 2665.943 kb on - strandat 2665.943 kb on - strandat 2665.996 kb on + strandat 2665.998 kb on + strandat 2665.998 kb on + strandat 2665.998 kb on + strandat 2666.027 kb on + strandat 2666.045 kb on + strandat 2666.045 kb on + strandat 2666.045 kb on + strandat 2666.479 kb on + strandat 2666.479 kb on + strandat 2666.479 kb on + strandat 2666.479 kb on + strandat 2666.479 kb on + strandat 2666.479 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,664,218 + +0.1
2,664,219 - -0.2
2,664,235 + +0.5
2,664,874 + OH686_12670 0.79 -0.2
2,665,037 - -0.5
2,665,191 + +1.2
2,665,192 - -1.0
2,665,192 - +0.0
2,665,814 - OH686_12675 0.85 -0.2
2,665,814 - OH686_12675 0.85 -1.4
2,665,872 + -1.0
2,665,873 - -0.2
2,665,942 + -0.3
2,665,942 + +0.0
2,665,942 + +0.0
2,665,943 - -0.5
2,665,943 - -0.1
2,665,943 - +1.0
2,665,996 + +0.1
2,665,998 + -1.0
2,665,998 + +0.2
2,665,998 + +1.4
2,666,027 + +0.4
2,666,045 + +0.5
2,666,045 + +0.7
2,666,045 + -0.6
2,666,479 + -0.8
2,666,479 + +0.0
2,666,479 + +0.6
2,666,479 + +0.4
2,666,479 + -1.0
2,666,479 + -0.0

Or see this region's nucleotide sequence