Strain Fitness in Pseudomonas sp. S08-1 around OH686_08590

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_08580 and OH686_08585 overlap by 4 nucleotidesOH686_08585 and OH686_08590 are separated by 46 nucleotidesOH686_08590 and OH686_08595 are separated by 0 nucleotides OH686_08580: OH686_08580 - TldD protein, part of TldE/TldD proteolytic complex, at 1,741,072 to 1,742,529 _08580 OH686_08585: OH686_08585 - Uncharacterized subgroup of the nitrilase superfamily, at 1,742,526 to 1,743,380 _08585 OH686_08590: OH686_08590 - Possible exported protein, at 1,743,427 to 1,747,266 _08590 OH686_08595: OH686_08595 - Ribonuclease G, at 1,747,267 to 1,748,724 _08595 Position (kb) 1743 1744 1745 1746 1747 1748Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1742.529 kb on + strandat 1742.529 kb on + strandat 1742.529 kb on + strandat 1742.529 kb on + strandat 1742.529 kb on + strandat 1742.529 kb on + strandat 1742.529 kb on + strandat 1742.530 kb on - strandat 1742.530 kb on - strandat 1742.647 kb on - strand, within OH686_08585at 1742.764 kb on + strand, within OH686_08585at 1742.764 kb on + strand, within OH686_08585at 1742.764 kb on + strand, within OH686_08585at 1742.764 kb on + strand, within OH686_08585at 1742.764 kb on + strand, within OH686_08585at 1742.764 kb on + strand, within OH686_08585at 1742.764 kb on + strand, within OH686_08585at 1742.764 kb on + strand, within OH686_08585at 1742.764 kb on + strand, within OH686_08585at 1742.764 kb on + strand, within OH686_08585at 1742.764 kb on + strand, within OH686_08585at 1742.764 kb on + strand, within OH686_08585at 1742.764 kb on + strand, within OH686_08585at 1742.764 kb on + strand, within OH686_08585at 1742.764 kb on + strand, within OH686_08585at 1742.764 kb on + strand, within OH686_08585at 1742.764 kb on + strand, within OH686_08585at 1742.765 kb on - strand, within OH686_08585at 1742.765 kb on - strand, within OH686_08585at 1742.765 kb on - strand, within OH686_08585at 1742.765 kb on - strand, within OH686_08585at 1742.765 kb on - strand, within OH686_08585at 1742.765 kb on - strand, within OH686_08585at 1742.765 kb on - strand, within OH686_08585at 1742.765 kb on - strand, within OH686_08585at 1742.884 kb on + strand, within OH686_08585at 1742.884 kb on + strand, within OH686_08585at 1742.884 kb on + strand, within OH686_08585at 1742.884 kb on + strand, within OH686_08585at 1742.884 kb on + strand, within OH686_08585at 1742.885 kb on - strand, within OH686_08585at 1742.885 kb on - strand, within OH686_08585at 1742.885 kb on - strand, within OH686_08585at 1742.908 kb on + strand, within OH686_08585at 1742.908 kb on + strand, within OH686_08585at 1742.909 kb on - strand, within OH686_08585at 1742.974 kb on + strand, within OH686_08585at 1742.974 kb on + strand, within OH686_08585at 1742.974 kb on + strand, within OH686_08585at 1742.974 kb on + strand, within OH686_08585at 1742.975 kb on - strand, within OH686_08585at 1742.975 kb on - strand, within OH686_08585at 1742.975 kb on - strand, within OH686_08585at 1742.975 kb on - strand, within OH686_08585at 1743.043 kb on + strand, within OH686_08585at 1743.044 kb on - strand, within OH686_08585at 1743.144 kb on + strand, within OH686_08585at 1743.156 kb on + strand, within OH686_08585at 1743.156 kb on + strand, within OH686_08585at 1743.156 kb on + strand, within OH686_08585at 1743.156 kb on + strand, within OH686_08585at 1743.156 kb on + strand, within OH686_08585at 1743.156 kb on + strand, within OH686_08585at 1743.156 kb on + strand, within OH686_08585at 1743.157 kb on - strand, within OH686_08585at 1743.157 kb on - strand, within OH686_08585at 1743.157 kb on - strand, within OH686_08585at 1743.157 kb on - strand, within OH686_08585at 1743.157 kb on - strand, within OH686_08585at 1743.327 kb on + strandat 1743.327 kb on + strandat 1743.327 kb on + strandat 1743.328 kb on - strandat 1743.450 kb on + strandat 1747.286 kb on + strandat 1747.286 kb on + strandat 1747.287 kb on - strandat 1747.287 kb on - strandat 1747.301 kb on + strandat 1747.301 kb on + strandat 1747.301 kb on + strandat 1747.301 kb on + strandat 1747.301 kb on + strandat 1747.301 kb on + strandat 1747.301 kb on + strandat 1747.301 kb on + strandat 1747.301 kb on + strandat 1747.302 kb on - strandat 1747.302 kb on - strandat 1747.302 kb on - strandat 1747.302 kb on - strandat 1747.302 kb on - strandat 1747.302 kb on - strandat 1747.302 kb on - strandat 1747.302 kb on - strandat 1747.419 kb on - strand, within OH686_08595at 1747.472 kb on + strand, within OH686_08595at 1747.473 kb on - strand, within OH686_08595at 1747.959 kb on - strand, within OH686_08595at 1748.109 kb on - strand, within OH686_08595at 1748.109 kb on - strand, within OH686_08595at 1748.109 kb on - strand, within OH686_08595at 1748.109 kb on - strand, within OH686_08595at 1748.109 kb on - strand, within OH686_08595at 1748.109 kb on - strand, within OH686_08595at 1748.109 kb on - strand, within OH686_08595at 1748.233 kb on - strand, within OH686_08595at 1748.233 kb on - strand, within OH686_08595

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,742,529 + +0.8
1,742,529 + -0.5
1,742,529 + -0.1
1,742,529 + +0.4
1,742,529 + -0.4
1,742,529 + +0.4
1,742,529 + +0.4
1,742,530 - -0.6
1,742,530 - +0.1
1,742,647 - OH686_08585 0.14 -0.2
1,742,764 + OH686_08585 0.28 +1.5
1,742,764 + OH686_08585 0.28 +1.3
1,742,764 + OH686_08585 0.28 +0.7
1,742,764 + OH686_08585 0.28 -0.3
1,742,764 + OH686_08585 0.28 -1.3
1,742,764 + OH686_08585 0.28 +0.0
1,742,764 + OH686_08585 0.28 +0.6
1,742,764 + OH686_08585 0.28 -0.0
1,742,764 + OH686_08585 0.28 +0.7
1,742,764 + OH686_08585 0.28 +1.2
1,742,764 + OH686_08585 0.28 +0.2
1,742,764 + OH686_08585 0.28 +0.1
1,742,764 + OH686_08585 0.28 -0.8
1,742,764 + OH686_08585 0.28 +0.4
1,742,764 + OH686_08585 0.28 -2.4
1,742,764 + OH686_08585 0.28 +0.3
1,742,764 + OH686_08585 0.28 -0.7
1,742,765 - OH686_08585 0.28 +0.9
1,742,765 - OH686_08585 0.28 -0.4
1,742,765 - OH686_08585 0.28 -0.1
1,742,765 - OH686_08585 0.28 -0.6
1,742,765 - OH686_08585 0.28 -0.6
1,742,765 - OH686_08585 0.28 -0.2
1,742,765 - OH686_08585 0.28 -0.8
1,742,765 - OH686_08585 0.28 -0.1
1,742,884 + OH686_08585 0.42 +0.6
1,742,884 + OH686_08585 0.42 +0.3
1,742,884 + OH686_08585 0.42 +0.2
1,742,884 + OH686_08585 0.42 +0.8
1,742,884 + OH686_08585 0.42 -0.5
1,742,885 - OH686_08585 0.42 -0.4
1,742,885 - OH686_08585 0.42 +0.8
1,742,885 - OH686_08585 0.42 -0.9
1,742,908 + OH686_08585 0.45 -0.2
1,742,908 + OH686_08585 0.45 -0.1
1,742,909 - OH686_08585 0.45 +0.5
1,742,974 + OH686_08585 0.52 -1.3
1,742,974 + OH686_08585 0.52 +0.0
1,742,974 + OH686_08585 0.52 +0.3
1,742,974 + OH686_08585 0.52 +0.7
1,742,975 - OH686_08585 0.53 -0.1
1,742,975 - OH686_08585 0.53 +0.6
1,742,975 - OH686_08585 0.53 -0.2
1,742,975 - OH686_08585 0.53 -0.3
1,743,043 + OH686_08585 0.60 -0.1
1,743,044 - OH686_08585 0.61 +0.1
1,743,144 + OH686_08585 0.72 -0.5
1,743,156 + OH686_08585 0.74 +0.2
1,743,156 + OH686_08585 0.74 +0.2
1,743,156 + OH686_08585 0.74 -0.4
1,743,156 + OH686_08585 0.74 -0.0
1,743,156 + OH686_08585 0.74 -0.0
1,743,156 + OH686_08585 0.74 -1.0
1,743,156 + OH686_08585 0.74 -0.8
1,743,157 - OH686_08585 0.74 +0.4
1,743,157 - OH686_08585 0.74 -0.0
1,743,157 - OH686_08585 0.74 +0.1
1,743,157 - OH686_08585 0.74 -0.5
1,743,157 - OH686_08585 0.74 +0.2
1,743,327 + -0.0
1,743,327 + +0.3
1,743,327 + +0.4
1,743,328 - +0.9
1,743,450 + -0.4
1,747,286 + -0.7
1,747,286 + -0.3
1,747,287 - -2.2
1,747,287 - -0.1
1,747,301 + -3.0
1,747,301 + +2.2
1,747,301 + -0.9
1,747,301 + -1.3
1,747,301 + +1.1
1,747,301 + +0.6
1,747,301 + +0.2
1,747,301 + -0.3
1,747,301 + -0.5
1,747,302 - -0.7
1,747,302 - +0.1
1,747,302 - -0.7
1,747,302 - +0.2
1,747,302 - -1.3
1,747,302 - +0.6
1,747,302 - -0.4
1,747,302 - -1.1
1,747,419 - OH686_08595 0.10 +1.0
1,747,472 + OH686_08595 0.14 -0.4
1,747,473 - OH686_08595 0.14 -1.8
1,747,959 - OH686_08595 0.47 -0.7
1,748,109 - OH686_08595 0.58 -0.1
1,748,109 - OH686_08595 0.58 -2.1
1,748,109 - OH686_08595 0.58 -1.3
1,748,109 - OH686_08595 0.58 +0.3
1,748,109 - OH686_08595 0.58 -0.4
1,748,109 - OH686_08595 0.58 +0.2
1,748,109 - OH686_08595 0.58 +0.3
1,748,233 - OH686_08595 0.66 +0.3
1,748,233 - OH686_08595 0.66 -0.2

Or see this region's nucleotide sequence