Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4454 and EX28DRAFT_4455 are separated by 13 nucleotides EX28DRAFT_4455 and EX28DRAFT_4456 are separated by 50 nucleotides
EX28DRAFT_4454: EX28DRAFT_4454 - undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase, at 20,770 to 21,873
_4454
EX28DRAFT_4455: EX28DRAFT_4455 - Chain length determinant protein, at 21,887 to 22,933
_4455
EX28DRAFT_4456: EX28DRAFT_4456 - UDP-N-acetylglucosamine 2-epimerase, at 22,984 to 24,120
_4456
Position (kb) 21
22
23 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 20.905 kb on - strand, within EX28DRAFT_4454 at 20.974 kb on + strand, within EX28DRAFT_4454 at 20.974 kb on + strand, within EX28DRAFT_4454 at 20.975 kb on - strand, within EX28DRAFT_4454 at 20.975 kb on - strand, within EX28DRAFT_4454 at 20.976 kb on + strand, within EX28DRAFT_4454 at 20.995 kb on + strand, within EX28DRAFT_4454 at 21.051 kb on + strand, within EX28DRAFT_4454 at 21.051 kb on + strand, within EX28DRAFT_4454 at 21.051 kb on + strand, within EX28DRAFT_4454 at 21.052 kb on - strand, within EX28DRAFT_4454 at 21.089 kb on + strand, within EX28DRAFT_4454 at 21.089 kb on + strand, within EX28DRAFT_4454 at 21.090 kb on - strand, within EX28DRAFT_4454 at 21.090 kb on - strand, within EX28DRAFT_4454 at 21.090 kb on - strand, within EX28DRAFT_4454 at 21.093 kb on + strand, within EX28DRAFT_4454 at 21.093 kb on + strand, within EX28DRAFT_4454 at 21.129 kb on + strand, within EX28DRAFT_4454 at 21.217 kb on - strand, within EX28DRAFT_4454 at 21.300 kb on - strand, within EX28DRAFT_4454 at 21.316 kb on + strand, within EX28DRAFT_4454 at 21.316 kb on + strand, within EX28DRAFT_4454 at 21.317 kb on - strand, within EX28DRAFT_4454 at 21.318 kb on + strand, within EX28DRAFT_4454 at 21.318 kb on + strand, within EX28DRAFT_4454 at 21.319 kb on - strand, within EX28DRAFT_4454 at 21.319 kb on - strand, within EX28DRAFT_4454 at 21.319 kb on - strand, within EX28DRAFT_4454 at 21.327 kb on + strand, within EX28DRAFT_4454 at 21.327 kb on + strand, within EX28DRAFT_4454 at 21.327 kb on + strand, within EX28DRAFT_4454 at 21.328 kb on - strand, within EX28DRAFT_4454 at 21.364 kb on + strand, within EX28DRAFT_4454 at 21.364 kb on + strand, within EX28DRAFT_4454 at 21.364 kb on + strand, within EX28DRAFT_4454 at 21.366 kb on + strand, within EX28DRAFT_4454 at 21.403 kb on - strand, within EX28DRAFT_4454 at 21.403 kb on - strand, within EX28DRAFT_4454 at 21.408 kb on - strand, within EX28DRAFT_4454 at 21.408 kb on - strand, within EX28DRAFT_4454 at 21.408 kb on - strand, within EX28DRAFT_4454 at 21.408 kb on - strand, within EX28DRAFT_4454 at 21.435 kb on + strand, within EX28DRAFT_4454 at 21.444 kb on + strand, within EX28DRAFT_4454 at 21.444 kb on + strand, within EX28DRAFT_4454 at 21.447 kb on + strand, within EX28DRAFT_4454 at 21.448 kb on - strand, within EX28DRAFT_4454 at 21.485 kb on + strand, within EX28DRAFT_4454 at 21.485 kb on + strand, within EX28DRAFT_4454 at 21.485 kb on + strand, within EX28DRAFT_4454 at 21.485 kb on + strand, within EX28DRAFT_4454 at 21.486 kb on - strand, within EX28DRAFT_4454 at 21.553 kb on - strand, within EX28DRAFT_4454 at 21.553 kb on - strand, within EX28DRAFT_4454 at 21.557 kb on - strand, within EX28DRAFT_4454 at 21.660 kb on + strand, within EX28DRAFT_4454 at 21.660 kb on + strand, within EX28DRAFT_4454 at 21.663 kb on + strand, within EX28DRAFT_4454 at 21.679 kb on - strand, within EX28DRAFT_4454 at 21.711 kb on + strand, within EX28DRAFT_4454 at 21.711 kb on + strand, within EX28DRAFT_4454 at 21.735 kb on + strand, within EX28DRAFT_4454 at 21.801 kb on - strand at 21.820 kb on - strand at 21.822 kb on + strand at 21.840 kb on + strand at 21.840 kb on + strand at 21.841 kb on - strand at 21.841 kb on - strand at 21.855 kb on + strand at 21.855 kb on + strand at 21.855 kb on + strand at 21.855 kb on + strand at 21.856 kb on - strand at 21.863 kb on + strand at 21.863 kb on + strand at 21.863 kb on + strand at 21.863 kb on + strand at 21.864 kb on - strand at 21.867 kb on + strand at 21.867 kb on + strand at 21.867 kb on + strand at 21.868 kb on - strand at 21.883 kb on + strand at 21.883 kb on + strand at 21.883 kb on + strand at 22.025 kb on + strand, within EX28DRAFT_4455 at 22.025 kb on + strand, within EX28DRAFT_4455 at 22.025 kb on + strand, within EX28DRAFT_4455 at 22.027 kb on + strand, within EX28DRAFT_4455 at 22.027 kb on + strand, within EX28DRAFT_4455 at 22.028 kb on - strand, within EX28DRAFT_4455 at 22.101 kb on - strand, within EX28DRAFT_4455 at 22.104 kb on - strand, within EX28DRAFT_4455 at 22.256 kb on + strand, within EX28DRAFT_4455 at 22.257 kb on - strand, within EX28DRAFT_4455 at 22.257 kb on - strand, within EX28DRAFT_4455 at 22.276 kb on + strand, within EX28DRAFT_4455 at 22.276 kb on + strand, within EX28DRAFT_4455 at 22.418 kb on + strand, within EX28DRAFT_4455 at 22.418 kb on + strand, within EX28DRAFT_4455 at 22.456 kb on + strand, within EX28DRAFT_4455 at 22.600 kb on + strand, within EX28DRAFT_4455 at 22.730 kb on + strand, within EX28DRAFT_4455 at 22.762 kb on + strand, within EX28DRAFT_4455 at 22.799 kb on + strand, within EX28DRAFT_4455 at 22.800 kb on - strand, within EX28DRAFT_4455 at 22.800 kb on - strand, within EX28DRAFT_4455 at 23.032 kb on - strand at 23.155 kb on + strand, within EX28DRAFT_4456 at 23.163 kb on + strand, within EX28DRAFT_4456 at 23.164 kb on - strand, within EX28DRAFT_4456 at 23.166 kb on + strand, within EX28DRAFT_4456 at 23.167 kb on - strand, within EX28DRAFT_4456 at 23.167 kb on - strand, within EX28DRAFT_4456 at 23.265 kb on - strand, within EX28DRAFT_4456 at 23.503 kb on - strand, within EX28DRAFT_4456 at 23.806 kb on + strand, within EX28DRAFT_4456
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 20,905 - EX28DRAFT_4454 0.12 -0.3 20,974 + EX28DRAFT_4454 0.18 -0.9 20,974 + EX28DRAFT_4454 0.18 -0.2 20,975 - EX28DRAFT_4454 0.19 +0.2 20,975 - EX28DRAFT_4454 0.19 +0.2 20,976 + EX28DRAFT_4454 0.19 -0.0 20,995 + EX28DRAFT_4454 0.20 -0.6 21,051 + EX28DRAFT_4454 0.25 -0.7 21,051 + EX28DRAFT_4454 0.25 -0.1 21,051 + EX28DRAFT_4454 0.25 +0.2 21,052 - EX28DRAFT_4454 0.26 -1.1 21,089 + EX28DRAFT_4454 0.29 -0.4 21,089 + EX28DRAFT_4454 0.29 +0.6 21,090 - EX28DRAFT_4454 0.29 -0.2 21,090 - EX28DRAFT_4454 0.29 -0.8 21,090 - EX28DRAFT_4454 0.29 -0.7 21,093 + EX28DRAFT_4454 0.29 -0.5 21,093 + EX28DRAFT_4454 0.29 -0.4 21,129 + EX28DRAFT_4454 0.33 -1.4 21,217 - EX28DRAFT_4454 0.40 -0.4 21,300 - EX28DRAFT_4454 0.48 -0.8 21,316 + EX28DRAFT_4454 0.49 -0.4 21,316 + EX28DRAFT_4454 0.49 -0.9 21,317 - EX28DRAFT_4454 0.50 -0.3 21,318 + EX28DRAFT_4454 0.50 -0.1 21,318 + EX28DRAFT_4454 0.50 +0.0 21,319 - EX28DRAFT_4454 0.50 -0.3 21,319 - EX28DRAFT_4454 0.50 +0.4 21,319 - EX28DRAFT_4454 0.50 -0.7 21,327 + EX28DRAFT_4454 0.50 -0.5 21,327 + EX28DRAFT_4454 0.50 -1.8 21,327 + EX28DRAFT_4454 0.50 -2.1 21,328 - EX28DRAFT_4454 0.51 -0.8 21,364 + EX28DRAFT_4454 0.54 -0.8 21,364 + EX28DRAFT_4454 0.54 -0.1 21,364 + EX28DRAFT_4454 0.54 +0.1 21,366 + EX28DRAFT_4454 0.54 -0.6 21,403 - EX28DRAFT_4454 0.57 +0.0 21,403 - EX28DRAFT_4454 0.57 -1.1 21,408 - EX28DRAFT_4454 0.58 -0.3 21,408 - EX28DRAFT_4454 0.58 -4.1 21,408 - EX28DRAFT_4454 0.58 -0.8 21,408 - EX28DRAFT_4454 0.58 -0.5 21,435 + EX28DRAFT_4454 0.60 -0.2 21,444 + EX28DRAFT_4454 0.61 +0.1 21,444 + EX28DRAFT_4454 0.61 -0.2 21,447 + EX28DRAFT_4454 0.61 -0.9 21,448 - EX28DRAFT_4454 0.61 -1.2 21,485 + EX28DRAFT_4454 0.65 -0.5 21,485 + EX28DRAFT_4454 0.65 -0.6 21,485 + EX28DRAFT_4454 0.65 -0.8 21,485 + EX28DRAFT_4454 0.65 -0.6 21,486 - EX28DRAFT_4454 0.65 -0.5 21,553 - EX28DRAFT_4454 0.71 -0.2 21,553 - EX28DRAFT_4454 0.71 -0.8 21,557 - EX28DRAFT_4454 0.71 -0.4 21,660 + EX28DRAFT_4454 0.81 -0.6 21,660 + EX28DRAFT_4454 0.81 -0.5 21,663 + EX28DRAFT_4454 0.81 -0.7 21,679 - EX28DRAFT_4454 0.82 -0.3 21,711 + EX28DRAFT_4454 0.85 -0.3 21,711 + EX28DRAFT_4454 0.85 -0.1 21,735 + EX28DRAFT_4454 0.87 -0.4 21,801 - -0.2 21,820 - -1.5 21,822 + +1.1 21,840 + -0.7 21,840 + -0.0 21,841 - -0.2 21,841 - -0.3 21,855 + -0.5 21,855 + -1.0 21,855 + -0.3 21,855 + -0.4 21,856 - -1.2 21,863 + +0.2 21,863 + -0.3 21,863 + +3.4 21,863 + +0.4 21,864 - +0.4 21,867 + -0.0 21,867 + +0.5 21,867 + +0.1 21,868 - -1.4 21,883 + +0.8 21,883 + -0.4 21,883 + +0.3 22,025 + EX28DRAFT_4455 0.13 +1.0 22,025 + EX28DRAFT_4455 0.13 +0.3 22,025 + EX28DRAFT_4455 0.13 -0.4 22,027 + EX28DRAFT_4455 0.13 -1.0 22,027 + EX28DRAFT_4455 0.13 +1.2 22,028 - EX28DRAFT_4455 0.13 -1.7 22,101 - EX28DRAFT_4455 0.20 -0.9 22,104 - EX28DRAFT_4455 0.21 -0.8 22,256 + EX28DRAFT_4455 0.35 +0.5 22,257 - EX28DRAFT_4455 0.35 -0.7 22,257 - EX28DRAFT_4455 0.35 -0.7 22,276 + EX28DRAFT_4455 0.37 +0.0 22,276 + EX28DRAFT_4455 0.37 +0.2 22,418 + EX28DRAFT_4455 0.51 +0.3 22,418 + EX28DRAFT_4455 0.51 +0.6 22,456 + EX28DRAFT_4455 0.54 +0.2 22,600 + EX28DRAFT_4455 0.68 -1.5 22,730 + EX28DRAFT_4455 0.81 +0.2 22,762 + EX28DRAFT_4455 0.84 +0.3 22,799 + EX28DRAFT_4455 0.87 -1.8 22,800 - EX28DRAFT_4455 0.87 -0.3 22,800 - EX28DRAFT_4455 0.87 -0.4 23,032 - -1.2 23,155 + EX28DRAFT_4456 0.15 +0.0 23,163 + EX28DRAFT_4456 0.16 -2.1 23,164 - EX28DRAFT_4456 0.16 -0.3 23,166 + EX28DRAFT_4456 0.16 -0.1 23,167 - EX28DRAFT_4456 0.16 +2.6 23,167 - EX28DRAFT_4456 0.16 +0.0 23,265 - EX28DRAFT_4456 0.25 -0.4 23,503 - EX28DRAFT_4456 0.46 -0.4 23,806 + EX28DRAFT_4456 0.72 +0.3
Or see this region's nucleotide sequence