Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4147 and EX28DRAFT_4148 overlap by 4 nucleotides EX28DRAFT_4148 and EX28DRAFT_4149 are separated by 3 nucleotides EX28DRAFT_4149 and EX28DRAFT_4150 overlap by 11 nucleotides EX28DRAFT_4150 and EX28DRAFT_4151 overlap by 11 nucleotides
EX28DRAFT_4147: EX28DRAFT_4147 - hypothetical protein, at 129,774 to 130,550
_4147
EX28DRAFT_4148: EX28DRAFT_4148 - Tfp pilus assembly protein PilN, at 130,547 to 131,041
_4148
EX28DRAFT_4149: EX28DRAFT_4149 - hypothetical protein, at 131,045 to 131,500
_4149
EX28DRAFT_4150: EX28DRAFT_4150 - Protein of unknown function (DUF2531), at 131,490 to 131,894
_4150
EX28DRAFT_4151: EX28DRAFT_4151 - type IV pilus secretin (or competence protein) PilQ, at 131,884 to 133,044
_4151
Position (kb) 131
132 Strain fitness (log2 ratio) -1
0
1
2 at 130.506 kb on + strand at 131.027 kb on - strand at 131.059 kb on - strand at 131.459 kb on - strand at 131.533 kb on + strand, within EX28DRAFT_4150 at 131.533 kb on + strand, within EX28DRAFT_4150 at 131.647 kb on + strand, within EX28DRAFT_4150 at 131.801 kb on + strand, within EX28DRAFT_4150 at 131.904 kb on - strand at 132.182 kb on - strand, within EX28DRAFT_4151 at 132.364 kb on - strand, within EX28DRAFT_4151 at 132.364 kb on - strand, within EX28DRAFT_4151 at 132.364 kb on - strand, within EX28DRAFT_4151 at 132.780 kb on + strand, within EX28DRAFT_4151 at 132.842 kb on + strand, within EX28DRAFT_4151 at 132.842 kb on + strand, within EX28DRAFT_4151
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 130,506 + +0.3 131,027 - +1.2 131,059 - +0.3 131,459 - +0.0 131,533 + EX28DRAFT_4150 0.11 +1.9 131,533 + EX28DRAFT_4150 0.11 +0.2 131,647 + EX28DRAFT_4150 0.39 +0.4 131,801 + EX28DRAFT_4150 0.77 -0.5 131,904 - -0.7 132,182 - EX28DRAFT_4151 0.26 -0.2 132,364 - EX28DRAFT_4151 0.41 +0.1 132,364 - EX28DRAFT_4151 0.41 -0.5 132,364 - EX28DRAFT_4151 0.41 +0.3 132,780 + EX28DRAFT_4151 0.77 +0.2 132,842 + EX28DRAFT_4151 0.83 +0.5 132,842 + EX28DRAFT_4151 0.83 +0.2
Or see this region's nucleotide sequence