Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3978

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3977 and EX28DRAFT_3978 are separated by 9 nucleotidesEX28DRAFT_3978 and EX28DRAFT_3979 are separated by 123 nucleotides EX28DRAFT_3977: EX28DRAFT_3977 - Protein of unknown function (DUF3748), at 184,021 to 185,292 _3977 EX28DRAFT_3978: EX28DRAFT_3978 - phosphoglycerate transporter family protein/D-galactonate transporter, at 185,302 to 186,594 _3978 EX28DRAFT_3979: EX28DRAFT_3979 - L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily, at 186,718 to 187,866 _3979 Position (kb) 185 186 187Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 184.329 kb on + strand, within EX28DRAFT_3977at 184.330 kb on - strand, within EX28DRAFT_3977at 184.429 kb on - strand, within EX28DRAFT_3977at 184.543 kb on + strand, within EX28DRAFT_3977at 184.544 kb on - strand, within EX28DRAFT_3977at 184.634 kb on + strand, within EX28DRAFT_3977at 184.823 kb on + strand, within EX28DRAFT_3977at 184.824 kb on - strand, within EX28DRAFT_3977at 184.824 kb on - strand, within EX28DRAFT_3977at 184.828 kb on - strand, within EX28DRAFT_3977at 185.024 kb on + strand, within EX28DRAFT_3977at 185.024 kb on + strand, within EX28DRAFT_3977at 185.024 kb on + strand, within EX28DRAFT_3977at 185.025 kb on - strand, within EX28DRAFT_3977at 185.025 kb on - strand, within EX28DRAFT_3977at 185.025 kb on - strand, within EX28DRAFT_3977at 185.095 kb on + strand, within EX28DRAFT_3977at 185.340 kb on - strandat 185.340 kb on - strandat 185.373 kb on + strandat 185.373 kb on + strandat 185.373 kb on + strandat 185.374 kb on - strandat 185.375 kb on + strandat 185.399 kb on + strandat 185.597 kb on + strand, within EX28DRAFT_3978at 185.598 kb on - strand, within EX28DRAFT_3978at 185.598 kb on - strand, within EX28DRAFT_3978at 185.691 kb on + strand, within EX28DRAFT_3978at 185.691 kb on + strand, within EX28DRAFT_3978at 185.691 kb on + strand, within EX28DRAFT_3978at 185.692 kb on - strand, within EX28DRAFT_3978at 185.692 kb on - strand, within EX28DRAFT_3978at 185.799 kb on - strand, within EX28DRAFT_3978at 185.875 kb on - strand, within EX28DRAFT_3978at 185.975 kb on + strand, within EX28DRAFT_3978at 185.975 kb on + strand, within EX28DRAFT_3978at 185.976 kb on - strand, within EX28DRAFT_3978at 186.024 kb on - strand, within EX28DRAFT_3978at 186.162 kb on - strand, within EX28DRAFT_3978at 186.344 kb on + strand, within EX28DRAFT_3978at 186.405 kb on - strand, within EX28DRAFT_3978at 186.432 kb on - strand, within EX28DRAFT_3978at 186.450 kb on + strand, within EX28DRAFT_3978at 186.509 kb on + strandat 186.509 kb on + strandat 186.509 kb on + strandat 186.510 kb on - strandat 186.528 kb on + strandat 186.529 kb on - strandat 186.662 kb on - strandat 186.663 kb on + strandat 186.671 kb on + strandat 186.671 kb on + strandat 186.671 kb on + strandat 186.672 kb on - strandat 186.675 kb on + strandat 186.676 kb on - strandat 186.676 kb on - strandat 186.705 kb on + strandat 186.915 kb on + strand, within EX28DRAFT_3979at 186.915 kb on + strand, within EX28DRAFT_3979at 186.915 kb on + strand, within EX28DRAFT_3979at 186.916 kb on - strand, within EX28DRAFT_3979at 186.916 kb on - strand, within EX28DRAFT_3979at 187.034 kb on + strand, within EX28DRAFT_3979at 187.137 kb on + strand, within EX28DRAFT_3979at 187.209 kb on - strand, within EX28DRAFT_3979at 187.515 kb on + strand, within EX28DRAFT_3979at 187.515 kb on + strand, within EX28DRAFT_3979at 187.516 kb on - strand, within EX28DRAFT_3979at 187.517 kb on + strand, within EX28DRAFT_3979at 187.518 kb on - strand, within EX28DRAFT_3979

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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184,329 + EX28DRAFT_3977 0.24 -0.7
184,330 - EX28DRAFT_3977 0.24 +0.5
184,429 - EX28DRAFT_3977 0.32 -0.7
184,543 + EX28DRAFT_3977 0.41 -0.2
184,544 - EX28DRAFT_3977 0.41 +0.5
184,634 + EX28DRAFT_3977 0.48 +1.0
184,823 + EX28DRAFT_3977 0.63 -0.3
184,824 - EX28DRAFT_3977 0.63 +1.0
184,824 - EX28DRAFT_3977 0.63 +0.6
184,828 - EX28DRAFT_3977 0.63 +1.1
185,024 + EX28DRAFT_3977 0.79 +2.1
185,024 + EX28DRAFT_3977 0.79 +0.4
185,024 + EX28DRAFT_3977 0.79 -0.3
185,025 - EX28DRAFT_3977 0.79 +0.4
185,025 - EX28DRAFT_3977 0.79 -0.6
185,025 - EX28DRAFT_3977 0.79 +0.9
185,095 + EX28DRAFT_3977 0.84 +0.5
185,340 - -0.2
185,340 - +0.0
185,373 + +0.5
185,373 + +4.5
185,373 + +0.2
185,374 - -0.6
185,375 + +0.2
185,399 + +0.1
185,597 + EX28DRAFT_3978 0.23 +0.6
185,598 - EX28DRAFT_3978 0.23 +1.2
185,598 - EX28DRAFT_3978 0.23 +0.0
185,691 + EX28DRAFT_3978 0.30 +0.3
185,691 + EX28DRAFT_3978 0.30 +0.2
185,691 + EX28DRAFT_3978 0.30 +0.3
185,692 - EX28DRAFT_3978 0.30 +1.1
185,692 - EX28DRAFT_3978 0.30 +0.5
185,799 - EX28DRAFT_3978 0.38 +0.2
185,875 - EX28DRAFT_3978 0.44 +0.6
185,975 + EX28DRAFT_3978 0.52 +0.4
185,975 + EX28DRAFT_3978 0.52 +0.3
185,976 - EX28DRAFT_3978 0.52 +1.1
186,024 - EX28DRAFT_3978 0.56 +0.2
186,162 - EX28DRAFT_3978 0.67 +1.3
186,344 + EX28DRAFT_3978 0.81 +0.9
186,405 - EX28DRAFT_3978 0.85 +0.4
186,432 - EX28DRAFT_3978 0.87 -0.5
186,450 + EX28DRAFT_3978 0.89 -0.6
186,509 + -0.2
186,509 + -2.4
186,509 + +0.4
186,510 - +0.1
186,528 + +0.1
186,529 - +0.1
186,662 - +0.5
186,663 + -0.1
186,671 + -0.7
186,671 + -0.0
186,671 + -0.2
186,672 - -0.1
186,675 + -1.1
186,676 - +0.6
186,676 - +0.1
186,705 + +1.1
186,915 + EX28DRAFT_3979 0.17 +0.3
186,915 + EX28DRAFT_3979 0.17 +1.2
186,915 + EX28DRAFT_3979 0.17 -0.4
186,916 - EX28DRAFT_3979 0.17 +1.3
186,916 - EX28DRAFT_3979 0.17 +0.0
187,034 + EX28DRAFT_3979 0.28 +0.5
187,137 + EX28DRAFT_3979 0.36 +0.6
187,209 - EX28DRAFT_3979 0.43 -0.6
187,515 + EX28DRAFT_3979 0.69 -0.8
187,515 + EX28DRAFT_3979 0.69 -0.5
187,516 - EX28DRAFT_3979 0.69 -0.3
187,517 + EX28DRAFT_3979 0.70 -0.1
187,518 - EX28DRAFT_3979 0.70 -0.2

Or see this region's nucleotide sequence