Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3951 and EX28DRAFT_3952 overlap by 4 nucleotides EX28DRAFT_3952 and EX28DRAFT_3953 are separated by 100 nucleotides EX28DRAFT_3953 and EX28DRAFT_3954 are separated by 3 nucleotides
EX28DRAFT_3951: EX28DRAFT_3951 - Signal transduction histidine kinase, glucose-6-phosphate specific, at 161,539 to 163,044
_3951
EX28DRAFT_3952: EX28DRAFT_3952 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 163,041 to 163,634
_3952
EX28DRAFT_3953: EX28DRAFT_3953 - acetolactate synthase, small subunit (EC 2.2.1.6), at 163,735 to 164,022
_3953
EX28DRAFT_3954: EX28DRAFT_3954 - acetolactate synthase, large subunit (EC 2.2.1.6), at 164,026 to 165,714
_3954
Position (kb) 163
164 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 162.229 kb on + strand, within EX28DRAFT_3951 at 162.284 kb on - strand, within EX28DRAFT_3951 at 162.372 kb on - strand, within EX28DRAFT_3951 at 162.769 kb on - strand, within EX28DRAFT_3951 at 163.171 kb on - strand, within EX28DRAFT_3952 at 163.269 kb on + strand, within EX28DRAFT_3952 at 163.274 kb on - strand, within EX28DRAFT_3952 at 163.406 kb on + strand, within EX28DRAFT_3952 at 163.481 kb on + strand, within EX28DRAFT_3952 at 163.602 kb on - strand at 164.214 kb on + strand, within EX28DRAFT_3954 at 164.235 kb on - strand, within EX28DRAFT_3954 at 164.262 kb on - strand, within EX28DRAFT_3954 at 164.329 kb on + strand, within EX28DRAFT_3954 at 164.556 kb on + strand, within EX28DRAFT_3954
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 162,229 + EX28DRAFT_3951 0.46 +0.2 162,284 - EX28DRAFT_3951 0.49 -1.0 162,372 - EX28DRAFT_3951 0.55 +0.1 162,769 - EX28DRAFT_3951 0.82 -0.1 163,171 - EX28DRAFT_3952 0.22 -0.9 163,269 + EX28DRAFT_3952 0.38 +0.6 163,274 - EX28DRAFT_3952 0.39 +0.1 163,406 + EX28DRAFT_3952 0.61 -0.4 163,481 + EX28DRAFT_3952 0.74 -0.4 163,602 - -0.7 164,214 + EX28DRAFT_3954 0.11 -0.1 164,235 - EX28DRAFT_3954 0.12 +3.9 164,262 - EX28DRAFT_3954 0.14 -0.7 164,329 + EX28DRAFT_3954 0.18 +0.3 164,556 + EX28DRAFT_3954 0.31 +2.2
Or see this region's nucleotide sequence