Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3926 and EX28DRAFT_3927 are separated by 21 nucleotides EX28DRAFT_3927 and EX28DRAFT_3928 are separated by 112 nucleotides EX28DRAFT_3928 and EX28DRAFT_3929 are separated by 26 nucleotides EX28DRAFT_3929 and EX28DRAFT_3930 are separated by 122 nucleotides
EX28DRAFT_3926: EX28DRAFT_3926 - Predicted ATPase, at 135,328 to 136,416
_3926
EX28DRAFT_3927: EX28DRAFT_3927 - hypothetical protein, at 136,438 to 136,686
_3927
EX28DRAFT_3928: EX28DRAFT_3928 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 136,799 to 137,752
_3928
EX28DRAFT_3929: EX28DRAFT_3929 - Predicted Zn-dependent hydrolases of the beta-lactamase fold, at 137,779 to 138,558
_3929
EX28DRAFT_3930: EX28DRAFT_3930 - lipoprotein, YaeC family, at 138,681 to 139,481
_3930
Position (kb) 136
137
138 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 135.806 kb on + strand, within EX28DRAFT_3926 at 135.871 kb on - strand, within EX28DRAFT_3926 at 135.883 kb on + strand, within EX28DRAFT_3926 at 136.366 kb on + strand at 136.415 kb on - strand at 136.489 kb on + strand, within EX28DRAFT_3927 at 136.490 kb on - strand, within EX28DRAFT_3927 at 136.490 kb on - strand, within EX28DRAFT_3927 at 136.490 kb on - strand, within EX28DRAFT_3927 at 136.530 kb on + strand, within EX28DRAFT_3927 at 136.531 kb on - strand, within EX28DRAFT_3927 at 136.655 kb on - strand, within EX28DRAFT_3927 at 136.663 kb on + strand at 136.664 kb on - strand at 136.677 kb on + strand at 136.677 kb on + strand at 136.677 kb on + strand at 136.678 kb on - strand at 136.678 kb on - strand at 136.680 kb on + strand at 136.681 kb on - strand at 136.687 kb on + strand at 136.736 kb on + strand at 136.740 kb on + strand at 136.740 kb on + strand at 136.740 kb on + strand at 136.741 kb on - strand at 136.745 kb on + strand at 136.745 kb on + strand at 136.746 kb on - strand at 136.785 kb on - strand at 136.800 kb on + strand at 136.801 kb on - strand at 136.801 kb on - strand at 137.006 kb on - strand, within EX28DRAFT_3928 at 137.068 kb on + strand, within EX28DRAFT_3928 at 137.069 kb on - strand, within EX28DRAFT_3928 at 137.097 kb on + strand, within EX28DRAFT_3928 at 137.113 kb on + strand, within EX28DRAFT_3928 at 137.137 kb on + strand, within EX28DRAFT_3928 at 137.137 kb on + strand, within EX28DRAFT_3928 at 137.137 kb on + strand, within EX28DRAFT_3928 at 137.137 kb on + strand, within EX28DRAFT_3928 at 137.249 kb on - strand, within EX28DRAFT_3928 at 137.249 kb on - strand, within EX28DRAFT_3928 at 137.250 kb on + strand, within EX28DRAFT_3928 at 137.250 kb on + strand, within EX28DRAFT_3928 at 137.250 kb on + strand, within EX28DRAFT_3928 at 137.250 kb on + strand, within EX28DRAFT_3928 at 137.251 kb on - strand, within EX28DRAFT_3928 at 137.296 kb on + strand, within EX28DRAFT_3928 at 137.297 kb on - strand, within EX28DRAFT_3928 at 137.314 kb on - strand, within EX28DRAFT_3928 at 137.314 kb on - strand, within EX28DRAFT_3928 at 137.323 kb on + strand, within EX28DRAFT_3928 at 137.415 kb on + strand, within EX28DRAFT_3928 at 137.697 kb on + strand at 137.785 kb on + strand at 137.787 kb on + strand at 137.788 kb on - strand at 137.847 kb on - strand at 137.847 kb on - strand at 137.962 kb on - strand, within EX28DRAFT_3929 at 138.081 kb on - strand, within EX28DRAFT_3929 at 138.440 kb on + strand, within EX28DRAFT_3929 at 138.496 kb on + strand at 138.497 kb on - strand at 138.497 kb on - strand at 138.519 kb on + strand at 138.520 kb on - strand at 138.558 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 135,806 + EX28DRAFT_3926 0.44 +0.5 135,871 - EX28DRAFT_3926 0.50 -1.0 135,883 + EX28DRAFT_3926 0.51 -0.9 136,366 + -0.2 136,415 - -0.9 136,489 + EX28DRAFT_3927 0.20 -0.4 136,490 - EX28DRAFT_3927 0.21 -0.3 136,490 - EX28DRAFT_3927 0.21 +0.0 136,490 - EX28DRAFT_3927 0.21 -0.1 136,530 + EX28DRAFT_3927 0.37 -1.6 136,531 - EX28DRAFT_3927 0.37 -0.2 136,655 - EX28DRAFT_3927 0.87 -0.3 136,663 + -0.8 136,664 - -1.6 136,677 + -0.3 136,677 + +0.9 136,677 + +0.8 136,678 - -0.1 136,678 - +0.4 136,680 + +0.1 136,681 - -1.4 136,687 + +0.0 136,736 + +0.6 136,740 + -0.3 136,740 + -0.1 136,740 + -0.1 136,741 - -1.6 136,745 + -0.8 136,745 + +0.7 136,746 - +0.1 136,785 - +0.3 136,800 + -0.7 136,801 - -0.9 136,801 - -0.5 137,006 - EX28DRAFT_3928 0.22 +0.2 137,068 + EX28DRAFT_3928 0.28 +0.5 137,069 - EX28DRAFT_3928 0.28 -3.5 137,097 + EX28DRAFT_3928 0.31 +0.7 137,113 + EX28DRAFT_3928 0.33 +2.1 137,137 + EX28DRAFT_3928 0.35 +0.1 137,137 + EX28DRAFT_3928 0.35 -0.1 137,137 + EX28DRAFT_3928 0.35 +0.5 137,137 + EX28DRAFT_3928 0.35 +0.8 137,249 - EX28DRAFT_3928 0.47 +1.2 137,249 - EX28DRAFT_3928 0.47 -0.7 137,250 + EX28DRAFT_3928 0.47 -0.3 137,250 + EX28DRAFT_3928 0.47 -0.6 137,250 + EX28DRAFT_3928 0.47 +0.9 137,250 + EX28DRAFT_3928 0.47 +0.1 137,251 - EX28DRAFT_3928 0.47 -0.2 137,296 + EX28DRAFT_3928 0.52 -0.5 137,297 - EX28DRAFT_3928 0.52 -0.3 137,314 - EX28DRAFT_3928 0.54 +0.1 137,314 - EX28DRAFT_3928 0.54 -0.1 137,323 + EX28DRAFT_3928 0.55 +0.3 137,415 + EX28DRAFT_3928 0.65 -0.1 137,697 + -0.4 137,785 + -0.1 137,787 + +0.5 137,788 - +0.2 137,847 - -0.3 137,847 - -0.2 137,962 - EX28DRAFT_3929 0.23 -1.8 138,081 - EX28DRAFT_3929 0.39 +0.4 138,440 + EX28DRAFT_3929 0.85 +1.4 138,496 + +0.2 138,497 - +1.5 138,497 - +0.1 138,519 + +0.1 138,520 - -1.0 138,558 + +0.1
Or see this region's nucleotide sequence