Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3926

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3925 and EX28DRAFT_3926 are separated by 145 nucleotidesEX28DRAFT_3926 and EX28DRAFT_3927 are separated by 21 nucleotidesEX28DRAFT_3927 and EX28DRAFT_3928 are separated by 112 nucleotides EX28DRAFT_3925: EX28DRAFT_3925 - Uncharacterized conserved protein, at 134,223 to 135,182 _3925 EX28DRAFT_3926: EX28DRAFT_3926 - Predicted ATPase, at 135,328 to 136,416 _3926 EX28DRAFT_3927: EX28DRAFT_3927 - hypothetical protein, at 136,438 to 136,686 _3927 EX28DRAFT_3928: EX28DRAFT_3928 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 136,799 to 137,752 _3928 Position (kb) 135 136 137Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 134.396 kb on - strand, within EX28DRAFT_3925at 134.396 kb on - strand, within EX28DRAFT_3925at 134.493 kb on + strand, within EX28DRAFT_3925at 134.748 kb on - strand, within EX28DRAFT_3925at 134.794 kb on - strand, within EX28DRAFT_3925at 134.795 kb on + strand, within EX28DRAFT_3925at 134.970 kb on - strand, within EX28DRAFT_3925at 134.979 kb on + strand, within EX28DRAFT_3925at 135.059 kb on + strand, within EX28DRAFT_3925at 135.091 kb on - strandat 135.114 kb on + strandat 135.132 kb on + strandat 135.132 kb on + strandat 135.295 kb on + strandat 135.439 kb on + strand, within EX28DRAFT_3926at 135.439 kb on + strand, within EX28DRAFT_3926at 135.439 kb on + strand, within EX28DRAFT_3926at 135.440 kb on - strand, within EX28DRAFT_3926at 135.589 kb on + strand, within EX28DRAFT_3926at 135.596 kb on - strand, within EX28DRAFT_3926at 135.602 kb on + strand, within EX28DRAFT_3926at 135.602 kb on + strand, within EX28DRAFT_3926at 135.603 kb on - strand, within EX28DRAFT_3926at 135.603 kb on - strand, within EX28DRAFT_3926at 135.726 kb on + strand, within EX28DRAFT_3926at 135.727 kb on - strand, within EX28DRAFT_3926at 135.791 kb on - strand, within EX28DRAFT_3926at 135.806 kb on + strand, within EX28DRAFT_3926at 135.871 kb on - strand, within EX28DRAFT_3926at 135.883 kb on + strand, within EX28DRAFT_3926at 136.366 kb on + strandat 136.415 kb on - strandat 136.489 kb on + strand, within EX28DRAFT_3927at 136.490 kb on - strand, within EX28DRAFT_3927at 136.490 kb on - strand, within EX28DRAFT_3927at 136.490 kb on - strand, within EX28DRAFT_3927at 136.530 kb on + strand, within EX28DRAFT_3927at 136.531 kb on - strand, within EX28DRAFT_3927at 136.655 kb on - strand, within EX28DRAFT_3927at 136.663 kb on + strandat 136.664 kb on - strandat 136.677 kb on + strandat 136.677 kb on + strandat 136.677 kb on + strandat 136.678 kb on - strandat 136.678 kb on - strandat 136.680 kb on + strandat 136.681 kb on - strandat 136.687 kb on + strandat 136.736 kb on + strandat 136.740 kb on + strandat 136.740 kb on + strandat 136.740 kb on + strandat 136.741 kb on - strandat 136.745 kb on + strandat 136.745 kb on + strandat 136.746 kb on - strandat 136.785 kb on - strandat 136.800 kb on + strandat 136.801 kb on - strandat 136.801 kb on - strandat 137.006 kb on - strand, within EX28DRAFT_3928at 137.068 kb on + strand, within EX28DRAFT_3928at 137.069 kb on - strand, within EX28DRAFT_3928at 137.097 kb on + strand, within EX28DRAFT_3928at 137.113 kb on + strand, within EX28DRAFT_3928at 137.137 kb on + strand, within EX28DRAFT_3928at 137.137 kb on + strand, within EX28DRAFT_3928at 137.137 kb on + strand, within EX28DRAFT_3928at 137.137 kb on + strand, within EX28DRAFT_3928at 137.249 kb on - strand, within EX28DRAFT_3928at 137.249 kb on - strand, within EX28DRAFT_3928at 137.250 kb on + strand, within EX28DRAFT_3928at 137.250 kb on + strand, within EX28DRAFT_3928at 137.250 kb on + strand, within EX28DRAFT_3928at 137.250 kb on + strand, within EX28DRAFT_3928at 137.251 kb on - strand, within EX28DRAFT_3928at 137.296 kb on + strand, within EX28DRAFT_3928at 137.297 kb on - strand, within EX28DRAFT_3928at 137.314 kb on - strand, within EX28DRAFT_3928at 137.314 kb on - strand, within EX28DRAFT_3928at 137.323 kb on + strand, within EX28DRAFT_3928at 137.415 kb on + strand, within EX28DRAFT_3928

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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134,396 - EX28DRAFT_3925 0.18 +0.2
134,396 - EX28DRAFT_3925 0.18 +0.3
134,493 + EX28DRAFT_3925 0.28 +0.8
134,748 - EX28DRAFT_3925 0.55 +1.0
134,794 - EX28DRAFT_3925 0.59 +0.2
134,795 + EX28DRAFT_3925 0.60 +0.2
134,970 - EX28DRAFT_3925 0.78 +0.7
134,979 + EX28DRAFT_3925 0.79 -0.1
135,059 + EX28DRAFT_3925 0.87 -0.4
135,091 - -0.3
135,114 + +0.3
135,132 + +0.2
135,132 + +1.3
135,295 + -0.3
135,439 + EX28DRAFT_3926 0.10 -1.5
135,439 + EX28DRAFT_3926 0.10 +1.9
135,439 + EX28DRAFT_3926 0.10 -1.4
135,440 - EX28DRAFT_3926 0.10 +0.2
135,589 + EX28DRAFT_3926 0.24 -1.2
135,596 - EX28DRAFT_3926 0.25 +0.2
135,602 + EX28DRAFT_3926 0.25 +1.0
135,602 + EX28DRAFT_3926 0.25 -0.3
135,603 - EX28DRAFT_3926 0.25 -0.3
135,603 - EX28DRAFT_3926 0.25 -0.1
135,726 + EX28DRAFT_3926 0.37 +0.6
135,727 - EX28DRAFT_3926 0.37 -1.3
135,791 - EX28DRAFT_3926 0.43 -0.1
135,806 + EX28DRAFT_3926 0.44 +0.5
135,871 - EX28DRAFT_3926 0.50 -1.0
135,883 + EX28DRAFT_3926 0.51 -0.9
136,366 + -0.2
136,415 - -0.9
136,489 + EX28DRAFT_3927 0.20 -0.4
136,490 - EX28DRAFT_3927 0.21 -0.3
136,490 - EX28DRAFT_3927 0.21 +0.0
136,490 - EX28DRAFT_3927 0.21 -0.1
136,530 + EX28DRAFT_3927 0.37 -1.6
136,531 - EX28DRAFT_3927 0.37 -0.2
136,655 - EX28DRAFT_3927 0.87 -0.3
136,663 + -0.8
136,664 - -1.6
136,677 + -0.3
136,677 + +0.9
136,677 + +0.8
136,678 - -0.1
136,678 - +0.4
136,680 + +0.1
136,681 - -1.4
136,687 + +0.0
136,736 + +0.6
136,740 + -0.3
136,740 + -0.1
136,740 + -0.1
136,741 - -1.6
136,745 + -0.8
136,745 + +0.7
136,746 - +0.1
136,785 - +0.3
136,800 + -0.7
136,801 - -0.9
136,801 - -0.5
137,006 - EX28DRAFT_3928 0.22 +0.2
137,068 + EX28DRAFT_3928 0.28 +0.5
137,069 - EX28DRAFT_3928 0.28 -3.5
137,097 + EX28DRAFT_3928 0.31 +0.7
137,113 + EX28DRAFT_3928 0.33 +2.1
137,137 + EX28DRAFT_3928 0.35 +0.1
137,137 + EX28DRAFT_3928 0.35 -0.1
137,137 + EX28DRAFT_3928 0.35 +0.5
137,137 + EX28DRAFT_3928 0.35 +0.8
137,249 - EX28DRAFT_3928 0.47 +1.2
137,249 - EX28DRAFT_3928 0.47 -0.7
137,250 + EX28DRAFT_3928 0.47 -0.3
137,250 + EX28DRAFT_3928 0.47 -0.6
137,250 + EX28DRAFT_3928 0.47 +0.9
137,250 + EX28DRAFT_3928 0.47 +0.1
137,251 - EX28DRAFT_3928 0.47 -0.2
137,296 + EX28DRAFT_3928 0.52 -0.5
137,297 - EX28DRAFT_3928 0.52 -0.3
137,314 - EX28DRAFT_3928 0.54 +0.1
137,314 - EX28DRAFT_3928 0.54 -0.1
137,323 + EX28DRAFT_3928 0.55 +0.3
137,415 + EX28DRAFT_3928 0.65 -0.1

Or see this region's nucleotide sequence