Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3828

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3826 and EX28DRAFT_3827 overlap by 8 nucleotidesEX28DRAFT_3827 and EX28DRAFT_3828 overlap by 1 nucleotidesEX28DRAFT_3828 and EX28DRAFT_3829 are separated by 103 nucleotides EX28DRAFT_3826: EX28DRAFT_3826 - Uncharacterized protein conserved in bacteria, at 30,271 to 31,266 _3826 EX28DRAFT_3827: EX28DRAFT_3827 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 31,259 to 32,179 _3827 EX28DRAFT_3828: EX28DRAFT_3828 - Amidases related to nicotinamidase, at 32,179 to 32,718 _3828 EX28DRAFT_3829: EX28DRAFT_3829 - D-xylulose kinase, at 32,822 to 34,276 _3829 Position (kb) 32 33Strain fitness (log2 ratio) -1 0 1 2at 31.264 kb on + strandat 31.268 kb on - strandat 31.290 kb on + strandat 31.349 kb on + strandat 31.350 kb on - strandat 31.350 kb on - strandat 31.572 kb on - strand, within EX28DRAFT_3827at 31.772 kb on + strand, within EX28DRAFT_3827at 31.780 kb on + strand, within EX28DRAFT_3827at 31.781 kb on - strand, within EX28DRAFT_3827at 31.784 kb on - strand, within EX28DRAFT_3827at 31.784 kb on - strand, within EX28DRAFT_3827at 32.039 kb on + strand, within EX28DRAFT_3827at 32.040 kb on - strand, within EX28DRAFT_3827at 32.073 kb on + strand, within EX28DRAFT_3827at 32.073 kb on + strand, within EX28DRAFT_3827at 32.073 kb on + strand, within EX28DRAFT_3827at 32.073 kb on + strand, within EX28DRAFT_3827at 32.073 kb on + strand, within EX28DRAFT_3827at 32.074 kb on - strand, within EX28DRAFT_3827at 32.133 kb on - strandat 32.133 kb on - strandat 32.277 kb on + strand, within EX28DRAFT_3828at 32.288 kb on + strand, within EX28DRAFT_3828at 32.289 kb on - strand, within EX28DRAFT_3828at 32.401 kb on - strand, within EX28DRAFT_3828at 32.464 kb on - strand, within EX28DRAFT_3828at 32.525 kb on + strand, within EX28DRAFT_3828at 32.525 kb on + strand, within EX28DRAFT_3828at 32.751 kb on + strandat 32.819 kb on + strandat 32.909 kb on + strandat 32.909 kb on + strandat 32.976 kb on - strand, within EX28DRAFT_3829at 33.265 kb on + strand, within EX28DRAFT_3829at 33.266 kb on - strand, within EX28DRAFT_3829at 33.282 kb on + strand, within EX28DRAFT_3829at 33.282 kb on + strand, within EX28DRAFT_3829at 33.682 kb on + strand, within EX28DRAFT_3829at 33.682 kb on + strand, within EX28DRAFT_3829at 33.682 kb on + strand, within EX28DRAFT_3829at 33.682 kb on + strand, within EX28DRAFT_3829at 33.683 kb on - strand, within EX28DRAFT_3829at 33.683 kb on - strand, within EX28DRAFT_3829

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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31,264 + +1.5
31,268 - -0.6
31,290 + -0.0
31,349 + +0.8
31,350 - -0.0
31,350 - -1.7
31,572 - EX28DRAFT_3827 0.34 +0.2
31,772 + EX28DRAFT_3827 0.56 -0.5
31,780 + EX28DRAFT_3827 0.57 +0.2
31,781 - EX28DRAFT_3827 0.57 +1.1
31,784 - EX28DRAFT_3827 0.57 -0.0
31,784 - EX28DRAFT_3827 0.57 +0.0
32,039 + EX28DRAFT_3827 0.85 -0.5
32,040 - EX28DRAFT_3827 0.85 -0.2
32,073 + EX28DRAFT_3827 0.88 +0.1
32,073 + EX28DRAFT_3827 0.88 -0.9
32,073 + EX28DRAFT_3827 0.88 +0.6
32,073 + EX28DRAFT_3827 0.88 +0.8
32,073 + EX28DRAFT_3827 0.88 -0.1
32,074 - EX28DRAFT_3827 0.88 -0.7
32,133 - -0.4
32,133 - +0.5
32,277 + EX28DRAFT_3828 0.18 -1.1
32,288 + EX28DRAFT_3828 0.20 +0.6
32,289 - EX28DRAFT_3828 0.20 +2.5
32,401 - EX28DRAFT_3828 0.41 -0.3
32,464 - EX28DRAFT_3828 0.53 -1.2
32,525 + EX28DRAFT_3828 0.64 +0.3
32,525 + EX28DRAFT_3828 0.64 +0.5
32,751 + +0.2
32,819 + +0.3
32,909 + +0.5
32,909 + +1.0
32,976 - EX28DRAFT_3829 0.11 +0.5
33,265 + EX28DRAFT_3829 0.30 +0.2
33,266 - EX28DRAFT_3829 0.31 -0.3
33,282 + EX28DRAFT_3829 0.32 -0.5
33,282 + EX28DRAFT_3829 0.32 +0.2
33,682 + EX28DRAFT_3829 0.59 -0.0
33,682 + EX28DRAFT_3829 0.59 -0.3
33,682 + EX28DRAFT_3829 0.59 +0.6
33,682 + EX28DRAFT_3829 0.59 +1.6
33,683 - EX28DRAFT_3829 0.59 -0.2
33,683 - EX28DRAFT_3829 0.59 -0.2

Or see this region's nucleotide sequence