Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3781

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3779 and EX28DRAFT_3780 overlap by 4 nucleotidesEX28DRAFT_3780 and EX28DRAFT_3781 are separated by 34 nucleotidesEX28DRAFT_3781 and EX28DRAFT_3782 are separated by 47 nucleotides EX28DRAFT_3779: EX28DRAFT_3779 - Uncharacterized protein conserved in bacteria, at 461,756 to 462,301 _3779 EX28DRAFT_3780: EX28DRAFT_3780 - RF-1 domain, at 462,298 to 462,720 _3780 EX28DRAFT_3781: EX28DRAFT_3781 - Uncharacterized lipoprotein NlpE involved in copper resistance, at 462,755 to 463,453 _3781 EX28DRAFT_3782: EX28DRAFT_3782 - prolyl-tRNA synthetase (EC 6.1.1.15), at 463,501 to 465,219 _3782 Position (kb) 462 463 464Strain fitness (log2 ratio) -1 0 1 2at 461.899 kb on + strand, within EX28DRAFT_3779at 461.899 kb on + strand, within EX28DRAFT_3779at 461.903 kb on + strand, within EX28DRAFT_3779at 461.903 kb on + strand, within EX28DRAFT_3779at 461.903 kb on + strand, within EX28DRAFT_3779at 461.904 kb on - strand, within EX28DRAFT_3779at 461.995 kb on - strand, within EX28DRAFT_3779at 462.032 kb on - strand, within EX28DRAFT_3779at 462.032 kb on - strand, within EX28DRAFT_3779at 462.075 kb on - strand, within EX28DRAFT_3779at 462.448 kb on + strand, within EX28DRAFT_3780at 462.448 kb on + strand, within EX28DRAFT_3780at 462.451 kb on + strand, within EX28DRAFT_3780at 462.451 kb on + strand, within EX28DRAFT_3780at 462.452 kb on - strand, within EX28DRAFT_3780at 462.452 kb on - strand, within EX28DRAFT_3780at 462.452 kb on - strand, within EX28DRAFT_3780at 462.452 kb on - strand, within EX28DRAFT_3780at 462.452 kb on - strand, within EX28DRAFT_3780at 462.453 kb on + strand, within EX28DRAFT_3780at 462.814 kb on + strandat 462.840 kb on + strand, within EX28DRAFT_3781at 462.840 kb on + strand, within EX28DRAFT_3781at 463.011 kb on - strand, within EX28DRAFT_3781at 463.011 kb on - strand, within EX28DRAFT_3781at 463.145 kb on + strand, within EX28DRAFT_3781at 463.205 kb on + strand, within EX28DRAFT_3781at 463.205 kb on + strand, within EX28DRAFT_3781at 463.205 kb on + strand, within EX28DRAFT_3781at 463.206 kb on - strand, within EX28DRAFT_3781at 463.206 kb on - strand, within EX28DRAFT_3781at 463.206 kb on - strand, within EX28DRAFT_3781at 463.206 kb on - strand, within EX28DRAFT_3781at 463.206 kb on - strand, within EX28DRAFT_3781at 463.206 kb on - strand, within EX28DRAFT_3781at 463.211 kb on + strand, within EX28DRAFT_3781at 463.211 kb on + strand, within EX28DRAFT_3781at 463.211 kb on + strand, within EX28DRAFT_3781at 463.211 kb on + strand, within EX28DRAFT_3781at 463.211 kb on + strand, within EX28DRAFT_3781at 463.211 kb on + strand, within EX28DRAFT_3781at 463.211 kb on + strand, within EX28DRAFT_3781at 463.211 kb on + strand, within EX28DRAFT_3781at 463.211 kb on + strand, within EX28DRAFT_3781at 463.211 kb on + strand, within EX28DRAFT_3781at 463.212 kb on - strand, within EX28DRAFT_3781at 463.212 kb on - strand, within EX28DRAFT_3781at 463.212 kb on - strand, within EX28DRAFT_3781at 463.354 kb on + strand, within EX28DRAFT_3781at 463.354 kb on + strand, within EX28DRAFT_3781at 463.355 kb on - strand, within EX28DRAFT_3781at 463.408 kb on + strandat 463.408 kb on + strandat 463.409 kb on - strandat 463.447 kb on + strandat 463.451 kb on + strandat 463.452 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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461,899 + EX28DRAFT_3779 0.26 -0.5
461,899 + EX28DRAFT_3779 0.26 -0.7
461,903 + EX28DRAFT_3779 0.27 +1.0
461,903 + EX28DRAFT_3779 0.27 -0.3
461,903 + EX28DRAFT_3779 0.27 -0.6
461,904 - EX28DRAFT_3779 0.27 -0.4
461,995 - EX28DRAFT_3779 0.44 -0.1
462,032 - EX28DRAFT_3779 0.51 +0.0
462,032 - EX28DRAFT_3779 0.51 -0.1
462,075 - EX28DRAFT_3779 0.58 +0.7
462,448 + EX28DRAFT_3780 0.35 -0.3
462,448 + EX28DRAFT_3780 0.35 -1.1
462,451 + EX28DRAFT_3780 0.36 +0.3
462,451 + EX28DRAFT_3780 0.36 -0.5
462,452 - EX28DRAFT_3780 0.36 -0.1
462,452 - EX28DRAFT_3780 0.36 -0.1
462,452 - EX28DRAFT_3780 0.36 -0.0
462,452 - EX28DRAFT_3780 0.36 -0.6
462,452 - EX28DRAFT_3780 0.36 +0.6
462,453 + EX28DRAFT_3780 0.37 +0.1
462,814 + -0.7
462,840 + EX28DRAFT_3781 0.12 -0.3
462,840 + EX28DRAFT_3781 0.12 +1.5
463,011 - EX28DRAFT_3781 0.37 +0.5
463,011 - EX28DRAFT_3781 0.37 -0.8
463,145 + EX28DRAFT_3781 0.56 +0.5
463,205 + EX28DRAFT_3781 0.64 -0.9
463,205 + EX28DRAFT_3781 0.64 +1.0
463,205 + EX28DRAFT_3781 0.64 +0.4
463,206 - EX28DRAFT_3781 0.65 +1.1
463,206 - EX28DRAFT_3781 0.65 +0.1
463,206 - EX28DRAFT_3781 0.65 -0.0
463,206 - EX28DRAFT_3781 0.65 -0.2
463,206 - EX28DRAFT_3781 0.65 -0.4
463,206 - EX28DRAFT_3781 0.65 +0.4
463,211 + EX28DRAFT_3781 0.65 -0.0
463,211 + EX28DRAFT_3781 0.65 -0.0
463,211 + EX28DRAFT_3781 0.65 -1.0
463,211 + EX28DRAFT_3781 0.65 +1.8
463,211 + EX28DRAFT_3781 0.65 -0.1
463,211 + EX28DRAFT_3781 0.65 +1.1
463,211 + EX28DRAFT_3781 0.65 +0.5
463,211 + EX28DRAFT_3781 0.65 +0.0
463,211 + EX28DRAFT_3781 0.65 -0.4
463,211 + EX28DRAFT_3781 0.65 +0.4
463,212 - EX28DRAFT_3781 0.65 -1.4
463,212 - EX28DRAFT_3781 0.65 +0.2
463,212 - EX28DRAFT_3781 0.65 +2.2
463,354 + EX28DRAFT_3781 0.86 -0.1
463,354 + EX28DRAFT_3781 0.86 +0.5
463,355 - EX28DRAFT_3781 0.86 +0.0
463,408 + -0.3
463,408 + +0.3
463,409 - +0.0
463,447 + -0.6
463,451 + -0.1
463,452 - -0.2

Or see this region's nucleotide sequence