Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3693 and EX28DRAFT_3694 are separated by 57 nucleotides EX28DRAFT_3694 and EX28DRAFT_3695 are separated by 34 nucleotides EX28DRAFT_3695 and EX28DRAFT_3696 are separated by 9 nucleotides EX28DRAFT_3696 and EX28DRAFT_3697 overlap by 1 nucleotides
EX28DRAFT_3693: EX28DRAFT_3693 - preprotein translocase, SecA subunit, at 363,264 to 365,969
_3693
EX28DRAFT_3694: EX28DRAFT_3694 - mutator mutT protein, at 366,027 to 366,419
_3694
EX28DRAFT_3695: EX28DRAFT_3695 - Uncharacterized protein conserved in bacteria, at 366,454 to 366,648
_3695
EX28DRAFT_3696: EX28DRAFT_3696 - Uncharacterized protein conserved in bacteria, at 366,658 to 367,401
_3696
EX28DRAFT_3697: EX28DRAFT_3697 - dephospho-CoA kinase, at 367,401 to 368,021
_3697
Position (kb) 366
367 Strain fitness (log2 ratio) -1
0
1
2
3 at 365.941 kb on - strand at 366.026 kb on + strand at 366.111 kb on - strand, within EX28DRAFT_3694 at 366.455 kb on + strand at 366.547 kb on - strand, within EX28DRAFT_3695 at 366.629 kb on - strand at 366.638 kb on - strand at 366.747 kb on + strand, within EX28DRAFT_3696 at 366.747 kb on + strand, within EX28DRAFT_3696 at 366.748 kb on - strand, within EX28DRAFT_3696 at 366.969 kb on + strand, within EX28DRAFT_3696 at 366.969 kb on + strand, within EX28DRAFT_3696 at 366.969 kb on + strand, within EX28DRAFT_3696 at 366.970 kb on - strand, within EX28DRAFT_3696 at 366.970 kb on - strand, within EX28DRAFT_3696 at 366.973 kb on + strand, within EX28DRAFT_3696 at 366.973 kb on + strand, within EX28DRAFT_3696 at 366.981 kb on + strand, within EX28DRAFT_3696 at 366.981 kb on + strand, within EX28DRAFT_3696 at 366.981 kb on + strand, within EX28DRAFT_3696 at 366.981 kb on + strand, within EX28DRAFT_3696 at 366.982 kb on - strand, within EX28DRAFT_3696 at 366.982 kb on - strand, within EX28DRAFT_3696 at 366.982 kb on - strand, within EX28DRAFT_3696 at 367.006 kb on - strand, within EX28DRAFT_3696 at 367.214 kb on - strand, within EX28DRAFT_3696 at 367.329 kb on + strand at 367.329 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 365,941 - -0.0 366,026 + -0.0 366,111 - EX28DRAFT_3694 0.21 -0.9 366,455 + +0.2 366,547 - EX28DRAFT_3695 0.48 +1.8 366,629 - +0.1 366,638 - -0.3 366,747 + EX28DRAFT_3696 0.12 -0.1 366,747 + EX28DRAFT_3696 0.12 -1.7 366,748 - EX28DRAFT_3696 0.12 -0.5 366,969 + EX28DRAFT_3696 0.42 -0.0 366,969 + EX28DRAFT_3696 0.42 +3.3 366,969 + EX28DRAFT_3696 0.42 -0.0 366,970 - EX28DRAFT_3696 0.42 +0.5 366,970 - EX28DRAFT_3696 0.42 +0.0 366,973 + EX28DRAFT_3696 0.42 +0.0 366,973 + EX28DRAFT_3696 0.42 +0.2 366,981 + EX28DRAFT_3696 0.43 -0.2 366,981 + EX28DRAFT_3696 0.43 +0.3 366,981 + EX28DRAFT_3696 0.43 +0.1 366,981 + EX28DRAFT_3696 0.43 +0.3 366,982 - EX28DRAFT_3696 0.44 -0.3 366,982 - EX28DRAFT_3696 0.44 -0.7 366,982 - EX28DRAFT_3696 0.44 -0.4 367,006 - EX28DRAFT_3696 0.47 -0.1 367,214 - EX28DRAFT_3696 0.75 +0.7 367,329 + -1.0 367,329 + +0.2
Or see this region's nucleotide sequence