Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3478

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3475 and EX28DRAFT_3476 are separated by 19 nucleotidesEX28DRAFT_3476 and EX28DRAFT_3477 are separated by 53 nucleotidesEX28DRAFT_3477 and EX28DRAFT_3478 are separated by 12 nucleotidesEX28DRAFT_3478 and EX28DRAFT_3479 are separated by 108 nucleotidesEX28DRAFT_3479 and EX28DRAFT_3480 overlap by 8 nucleotides EX28DRAFT_3475: EX28DRAFT_3475 - hypothetical protein, at 143,469 to 143,654 _3475 EX28DRAFT_3476: EX28DRAFT_3476 - hypothetical protein, at 143,674 to 143,841 _3476 EX28DRAFT_3477: EX28DRAFT_3477 - Helix-turn-helix domain, at 143,895 to 144,509 _3477 EX28DRAFT_3478: EX28DRAFT_3478 - hypothetical protein, at 144,522 to 144,803 _3478 EX28DRAFT_3479: EX28DRAFT_3479 - hypothetical protein, at 144,912 to 145,295 _3479 EX28DRAFT_3480: EX28DRAFT_3480 - hypothetical protein, at 145,288 to 145,623 _3480 Position (kb) 144 145Strain fitness (log2 ratio) -2 -1 0 1 2at 143.545 kb on + strand, within EX28DRAFT_3475at 143.545 kb on + strand, within EX28DRAFT_3475at 143.789 kb on - strand, within EX28DRAFT_3476at 143.856 kb on + strandat 143.860 kb on - strandat 143.881 kb on + strandat 144.013 kb on - strand, within EX28DRAFT_3477at 144.033 kb on - strand, within EX28DRAFT_3477at 144.116 kb on + strand, within EX28DRAFT_3477at 144.142 kb on + strand, within EX28DRAFT_3477at 144.167 kb on + strand, within EX28DRAFT_3477at 144.173 kb on + strand, within EX28DRAFT_3477at 144.174 kb on - strand, within EX28DRAFT_3477at 144.174 kb on - strand, within EX28DRAFT_3477at 144.192 kb on + strand, within EX28DRAFT_3477at 144.193 kb on - strand, within EX28DRAFT_3477at 144.193 kb on - strand, within EX28DRAFT_3477at 144.220 kb on + strand, within EX28DRAFT_3477at 144.257 kb on - strand, within EX28DRAFT_3477at 144.321 kb on - strand, within EX28DRAFT_3477at 144.340 kb on - strand, within EX28DRAFT_3477at 144.421 kb on + strand, within EX28DRAFT_3477at 144.421 kb on + strand, within EX28DRAFT_3477at 144.475 kb on - strandat 144.539 kb on - strandat 144.572 kb on + strand, within EX28DRAFT_3478at 144.614 kb on - strand, within EX28DRAFT_3478at 144.668 kb on - strand, within EX28DRAFT_3478at 144.704 kb on - strand, within EX28DRAFT_3478at 144.751 kb on - strand, within EX28DRAFT_3478at 144.840 kb on + strandat 145.084 kb on + strand, within EX28DRAFT_3479at 145.100 kb on - strand, within EX28DRAFT_3479at 145.123 kb on - strand, within EX28DRAFT_3479at 145.183 kb on + strand, within EX28DRAFT_3479at 145.183 kb on + strand, within EX28DRAFT_3479at 145.200 kb on - strand, within EX28DRAFT_3479at 145.215 kb on + strand, within EX28DRAFT_3479at 145.215 kb on + strand, within EX28DRAFT_3479at 145.215 kb on + strand, within EX28DRAFT_3479at 145.216 kb on - strand, within EX28DRAFT_3479at 145.217 kb on + strand, within EX28DRAFT_3479at 145.294 kb on - strandat 145.294 kb on - strandat 145.296 kb on + strandat 145.297 kb on - strandat 145.297 kb on - strandat 145.300 kb on + strandat 145.301 kb on - strandat 145.318 kb on - strandat 145.365 kb on - strand, within EX28DRAFT_3480at 145.382 kb on + strand, within EX28DRAFT_3480at 145.528 kb on - strand, within EX28DRAFT_3480at 145.561 kb on + strand, within EX28DRAFT_3480at 145.561 kb on + strand, within EX28DRAFT_3480at 145.561 kb on + strand, within EX28DRAFT_3480at 145.562 kb on - strand, within EX28DRAFT_3480at 145.562 kb on - strand, within EX28DRAFT_3480at 145.562 kb on - strand, within EX28DRAFT_3480at 145.562 kb on - strand, within EX28DRAFT_3480at 145.562 kb on - strand, within EX28DRAFT_3480at 145.562 kb on - strand, within EX28DRAFT_3480at 145.673 kb on + strandat 145.673 kb on + strandat 145.675 kb on + strandat 145.675 kb on + strandat 145.676 kb on - strandat 145.680 kb on + strandat 145.706 kb on + strandat 145.714 kb on + strandat 145.743 kb on - strandat 145.761 kb on + strandat 145.764 kb on + strandat 145.764 kb on + strandat 145.765 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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143,545 + EX28DRAFT_3475 0.41 +0.5
143,545 + EX28DRAFT_3475 0.41 -0.0
143,789 - EX28DRAFT_3476 0.68 -1.2
143,856 + +0.2
143,860 - +0.0
143,881 + -0.2
144,013 - EX28DRAFT_3477 0.19 +0.7
144,033 - EX28DRAFT_3477 0.22 +0.2
144,116 + EX28DRAFT_3477 0.36 +1.6
144,142 + EX28DRAFT_3477 0.40 +1.0
144,167 + EX28DRAFT_3477 0.44 -0.3
144,173 + EX28DRAFT_3477 0.45 -2.4
144,174 - EX28DRAFT_3477 0.45 +0.4
144,174 - EX28DRAFT_3477 0.45 +0.4
144,192 + EX28DRAFT_3477 0.48 +0.4
144,193 - EX28DRAFT_3477 0.48 -1.2
144,193 - EX28DRAFT_3477 0.48 -0.0
144,220 + EX28DRAFT_3477 0.53 -1.0
144,257 - EX28DRAFT_3477 0.59 +0.0
144,321 - EX28DRAFT_3477 0.69 +0.8
144,340 - EX28DRAFT_3477 0.72 -1.6
144,421 + EX28DRAFT_3477 0.86 -0.8
144,421 + EX28DRAFT_3477 0.86 -0.4
144,475 - +0.4
144,539 - -0.0
144,572 + EX28DRAFT_3478 0.18 +0.3
144,614 - EX28DRAFT_3478 0.33 +0.8
144,668 - EX28DRAFT_3478 0.52 -1.2
144,704 - EX28DRAFT_3478 0.65 +0.5
144,751 - EX28DRAFT_3478 0.81 -1.6
144,840 + -0.2
145,084 + EX28DRAFT_3479 0.45 +0.2
145,100 - EX28DRAFT_3479 0.49 -0.0
145,123 - EX28DRAFT_3479 0.55 +0.2
145,183 + EX28DRAFT_3479 0.71 +0.1
145,183 + EX28DRAFT_3479 0.71 +0.1
145,200 - EX28DRAFT_3479 0.75 -0.0
145,215 + EX28DRAFT_3479 0.79 -0.3
145,215 + EX28DRAFT_3479 0.79 -0.0
145,215 + EX28DRAFT_3479 0.79 -0.3
145,216 - EX28DRAFT_3479 0.79 +0.0
145,217 + EX28DRAFT_3479 0.79 -0.6
145,294 - +1.3
145,294 - +0.7
145,296 + -0.3
145,297 - +1.1
145,297 - -0.2
145,300 + -0.2
145,301 - -0.3
145,318 - +0.2
145,365 - EX28DRAFT_3480 0.23 -0.6
145,382 + EX28DRAFT_3480 0.28 +0.6
145,528 - EX28DRAFT_3480 0.71 -0.2
145,561 + EX28DRAFT_3480 0.81 -1.9
145,561 + EX28DRAFT_3480 0.81 +0.2
145,561 + EX28DRAFT_3480 0.81 +1.0
145,562 - EX28DRAFT_3480 0.82 +0.1
145,562 - EX28DRAFT_3480 0.82 +0.0
145,562 - EX28DRAFT_3480 0.82 +0.0
145,562 - EX28DRAFT_3480 0.82 -0.6
145,562 - EX28DRAFT_3480 0.82 +2.5
145,562 - EX28DRAFT_3480 0.82 +1.3
145,673 + +0.1
145,673 + +0.4
145,675 + -1.7
145,675 + +0.1
145,676 - -0.1
145,680 + +0.4
145,706 + +1.2
145,714 + -0.9
145,743 - +0.4
145,761 + +0.3
145,764 + -0.6
145,764 + +0.3
145,765 - +0.7

Or see this region's nucleotide sequence