Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3418

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3417 and EX28DRAFT_3418 overlap by 29 nucleotidesEX28DRAFT_3418 and EX28DRAFT_3419 are separated by 150 nucleotides EX28DRAFT_3417: EX28DRAFT_3417 - methyl-accepting chemotaxis sensory transducer with TarH sensor, at 88,304 to 89,875 _3417 EX28DRAFT_3418: EX28DRAFT_3418 - Bacterial regulatory helix-turn-helix protein, lysR family, at 89,847 to 90,203 _3418 EX28DRAFT_3419: EX28DRAFT_3419 - Fructose-1,6-bisphosphatase, at 90,354 to 91,352 _3419 Position (kb) 89 90 91Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 88.878 kb on + strand, within EX28DRAFT_3417at 89.021 kb on - strand, within EX28DRAFT_3417at 89.070 kb on + strand, within EX28DRAFT_3417at 89.563 kb on + strand, within EX28DRAFT_3417at 89.726 kb on - strandat 89.876 kb on + strandat 89.877 kb on - strandat 90.165 kb on + strand, within EX28DRAFT_3418at 90.295 kb on + strandat 90.298 kb on - strandat 90.308 kb on - strandat 90.311 kb on + strandat 90.311 kb on + strandat 90.311 kb on + strandat 90.312 kb on - strandat 90.377 kb on + strandat 90.474 kb on - strand, within EX28DRAFT_3419at 90.583 kb on + strand, within EX28DRAFT_3419at 90.584 kb on - strand, within EX28DRAFT_3419at 90.584 kb on - strand, within EX28DRAFT_3419at 90.584 kb on - strand, within EX28DRAFT_3419at 90.584 kb on - strand, within EX28DRAFT_3419at 90.584 kb on - strand, within EX28DRAFT_3419at 90.584 kb on - strand, within EX28DRAFT_3419at 90.638 kb on - strand, within EX28DRAFT_3419at 90.638 kb on - strand, within EX28DRAFT_3419at 90.668 kb on + strand, within EX28DRAFT_3419at 90.690 kb on - strand, within EX28DRAFT_3419at 90.690 kb on - strand, within EX28DRAFT_3419at 90.694 kb on + strand, within EX28DRAFT_3419at 90.695 kb on - strand, within EX28DRAFT_3419at 90.695 kb on - strand, within EX28DRAFT_3419at 90.695 kb on - strand, within EX28DRAFT_3419at 90.725 kb on - strand, within EX28DRAFT_3419at 90.725 kb on - strand, within EX28DRAFT_3419at 90.745 kb on + strand, within EX28DRAFT_3419at 90.746 kb on - strand, within EX28DRAFT_3419at 90.814 kb on + strand, within EX28DRAFT_3419at 90.814 kb on + strand, within EX28DRAFT_3419at 90.814 kb on + strand, within EX28DRAFT_3419at 90.815 kb on - strand, within EX28DRAFT_3419at 90.847 kb on + strand, within EX28DRAFT_3419at 90.848 kb on - strand, within EX28DRAFT_3419at 90.848 kb on - strand, within EX28DRAFT_3419at 90.848 kb on - strand, within EX28DRAFT_3419at 90.871 kb on + strand, within EX28DRAFT_3419at 90.871 kb on + strand, within EX28DRAFT_3419at 90.872 kb on - strand, within EX28DRAFT_3419at 90.872 kb on - strand, within EX28DRAFT_3419at 90.962 kb on - strand, within EX28DRAFT_3419at 90.962 kb on - strand, within EX28DRAFT_3419at 91.039 kb on + strand, within EX28DRAFT_3419at 91.039 kb on + strand, within EX28DRAFT_3419at 91.039 kb on + strand, within EX28DRAFT_3419at 91.040 kb on - strand, within EX28DRAFT_3419at 91.040 kb on - strand, within EX28DRAFT_3419at 91.040 kb on - strand, within EX28DRAFT_3419at 91.043 kb on + strand, within EX28DRAFT_3419at 91.044 kb on - strand, within EX28DRAFT_3419

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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88,878 + EX28DRAFT_3417 0.37 -0.0
89,021 - EX28DRAFT_3417 0.46 -0.7
89,070 + EX28DRAFT_3417 0.49 -0.0
89,563 + EX28DRAFT_3417 0.80 -0.0
89,726 - +2.7
89,876 + -0.6
89,877 - +0.1
90,165 + EX28DRAFT_3418 0.89 -0.6
90,295 + -2.5
90,298 - -0.3
90,308 - -0.8
90,311 + +1.0
90,311 + -0.2
90,311 + -0.0
90,312 - -0.9
90,377 + +0.0
90,474 - EX28DRAFT_3419 0.12 +1.3
90,583 + EX28DRAFT_3419 0.23 +0.0
90,584 - EX28DRAFT_3419 0.23 +0.6
90,584 - EX28DRAFT_3419 0.23 -0.6
90,584 - EX28DRAFT_3419 0.23 -0.3
90,584 - EX28DRAFT_3419 0.23 -0.9
90,584 - EX28DRAFT_3419 0.23 +0.5
90,584 - EX28DRAFT_3419 0.23 -0.4
90,638 - EX28DRAFT_3419 0.28 +0.1
90,638 - EX28DRAFT_3419 0.28 +0.1
90,668 + EX28DRAFT_3419 0.31 -0.0
90,690 - EX28DRAFT_3419 0.34 -2.0
90,690 - EX28DRAFT_3419 0.34 +2.2
90,694 + EX28DRAFT_3419 0.34 -0.8
90,695 - EX28DRAFT_3419 0.34 -0.8
90,695 - EX28DRAFT_3419 0.34 -0.3
90,695 - EX28DRAFT_3419 0.34 +0.4
90,725 - EX28DRAFT_3419 0.37 +0.4
90,725 - EX28DRAFT_3419 0.37 -0.3
90,745 + EX28DRAFT_3419 0.39 -1.9
90,746 - EX28DRAFT_3419 0.39 +0.3
90,814 + EX28DRAFT_3419 0.46 -0.9
90,814 + EX28DRAFT_3419 0.46 -3.9
90,814 + EX28DRAFT_3419 0.46 -0.3
90,815 - EX28DRAFT_3419 0.46 -1.0
90,847 + EX28DRAFT_3419 0.49 -1.1
90,848 - EX28DRAFT_3419 0.49 -1.0
90,848 - EX28DRAFT_3419 0.49 -0.3
90,848 - EX28DRAFT_3419 0.49 -0.4
90,871 + EX28DRAFT_3419 0.52 +0.0
90,871 + EX28DRAFT_3419 0.52 -0.6
90,872 - EX28DRAFT_3419 0.52 -0.4
90,872 - EX28DRAFT_3419 0.52 -0.0
90,962 - EX28DRAFT_3419 0.61 -0.2
90,962 - EX28DRAFT_3419 0.61 -0.9
91,039 + EX28DRAFT_3419 0.69 +0.8
91,039 + EX28DRAFT_3419 0.69 -1.0
91,039 + EX28DRAFT_3419 0.69 -0.2
91,040 - EX28DRAFT_3419 0.69 -0.3
91,040 - EX28DRAFT_3419 0.69 -0.0
91,040 - EX28DRAFT_3419 0.69 -0.7
91,043 + EX28DRAFT_3419 0.69 +0.0
91,044 - EX28DRAFT_3419 0.69 -0.4

Or see this region's nucleotide sequence