Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3364

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3363 and EX28DRAFT_3364 are separated by 13 nucleotidesEX28DRAFT_3364 and EX28DRAFT_3365 overlap by 8 nucleotidesEX28DRAFT_3365 and EX28DRAFT_3366 overlap by 50 nucleotides EX28DRAFT_3363: EX28DRAFT_3363 - epoxyqueuosine reductase, at 30,234 to 31,373 _3363 EX28DRAFT_3364: EX28DRAFT_3364 - yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region, at 31,387 to 32,895 _3364 EX28DRAFT_3365: EX28DRAFT_3365 - tRNA threonylcarbamoyl adenosine modification protein YjeE, at 32,888 to 33,349 _3365 EX28DRAFT_3366: EX28DRAFT_3366 - N-acetylmuramoyl-L-alanine amidase, at 33,300 to 34,706 _3366 Position (kb) 31 32 33Strain fitness (log2 ratio) -1 0 1 2 3 4at 30.449 kb on + strand, within EX28DRAFT_3363at 30.450 kb on - strand, within EX28DRAFT_3363at 30.563 kb on + strand, within EX28DRAFT_3363at 30.642 kb on + strand, within EX28DRAFT_3363at 30.644 kb on - strand, within EX28DRAFT_3363at 30.659 kb on + strand, within EX28DRAFT_3363at 30.699 kb on + strand, within EX28DRAFT_3363at 30.699 kb on + strand, within EX28DRAFT_3363at 30.700 kb on - strand, within EX28DRAFT_3363at 30.700 kb on - strand, within EX28DRAFT_3363at 30.739 kb on + strand, within EX28DRAFT_3363at 30.887 kb on + strand, within EX28DRAFT_3363at 30.888 kb on - strand, within EX28DRAFT_3363at 30.888 kb on - strand, within EX28DRAFT_3363at 30.900 kb on - strand, within EX28DRAFT_3363at 30.947 kb on + strand, within EX28DRAFT_3363at 31.002 kb on - strand, within EX28DRAFT_3363at 31.032 kb on + strand, within EX28DRAFT_3363at 31.032 kb on + strand, within EX28DRAFT_3363at 31.033 kb on - strand, within EX28DRAFT_3363at 31.040 kb on + strand, within EX28DRAFT_3363at 31.040 kb on + strand, within EX28DRAFT_3363at 31.041 kb on - strand, within EX28DRAFT_3363at 31.041 kb on - strand, within EX28DRAFT_3363at 31.045 kb on + strand, within EX28DRAFT_3363at 31.075 kb on + strand, within EX28DRAFT_3363at 31.096 kb on - strand, within EX28DRAFT_3363at 31.129 kb on + strand, within EX28DRAFT_3363at 31.129 kb on + strand, within EX28DRAFT_3363at 31.129 kb on + strand, within EX28DRAFT_3363at 31.129 kb on + strand, within EX28DRAFT_3363at 31.130 kb on - strand, within EX28DRAFT_3363at 31.155 kb on + strand, within EX28DRAFT_3363at 31.156 kb on - strand, within EX28DRAFT_3363at 31.231 kb on + strand, within EX28DRAFT_3363at 31.232 kb on - strand, within EX28DRAFT_3363at 31.333 kb on - strandat 31.407 kb on + strandat 31.521 kb on + strandat 31.600 kb on + strand, within EX28DRAFT_3364at 31.797 kb on - strand, within EX28DRAFT_3364at 31.843 kb on - strand, within EX28DRAFT_3364at 31.939 kb on - strand, within EX28DRAFT_3364at 31.939 kb on - strand, within EX28DRAFT_3364at 32.149 kb on - strand, within EX28DRAFT_3364at 32.205 kb on - strand, within EX28DRAFT_3364at 32.340 kb on - strand, within EX28DRAFT_3364at 32.340 kb on - strand, within EX28DRAFT_3364at 32.340 kb on - strand, within EX28DRAFT_3364at 32.379 kb on + strand, within EX28DRAFT_3364at 32.521 kb on - strand, within EX28DRAFT_3364at 32.650 kb on - strand, within EX28DRAFT_3364at 32.882 kb on + strandat 33.370 kb on + strandat 33.455 kb on - strand, within EX28DRAFT_3366at 33.720 kb on + strand, within EX28DRAFT_3366at 33.720 kb on + strand, within EX28DRAFT_3366at 33.734 kb on + strand, within EX28DRAFT_3366at 33.803 kb on + strand, within EX28DRAFT_3366at 33.806 kb on - strand, within EX28DRAFT_3366at 33.806 kb on - strand, within EX28DRAFT_3366at 33.807 kb on + strand, within EX28DRAFT_3366at 33.807 kb on + strand, within EX28DRAFT_3366at 33.808 kb on - strand, within EX28DRAFT_3366at 33.808 kb on - strand, within EX28DRAFT_3366at 33.808 kb on - strand, within EX28DRAFT_3366at 33.809 kb on + strand, within EX28DRAFT_3366at 33.809 kb on + strand, within EX28DRAFT_3366at 33.809 kb on + strand, within EX28DRAFT_3366at 33.809 kb on + strand, within EX28DRAFT_3366at 33.810 kb on - strand, within EX28DRAFT_3366at 33.810 kb on - strand, within EX28DRAFT_3366at 33.810 kb on - strand, within EX28DRAFT_3366at 33.888 kb on - strand, within EX28DRAFT_3366

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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30,449 + EX28DRAFT_3363 0.19 +0.2
30,450 - EX28DRAFT_3363 0.19 -0.5
30,563 + EX28DRAFT_3363 0.29 -0.4
30,642 + EX28DRAFT_3363 0.36 +0.3
30,644 - EX28DRAFT_3363 0.36 -0.8
30,659 + EX28DRAFT_3363 0.37 -0.2
30,699 + EX28DRAFT_3363 0.41 -0.2
30,699 + EX28DRAFT_3363 0.41 -0.1
30,700 - EX28DRAFT_3363 0.41 -0.0
30,700 - EX28DRAFT_3363 0.41 +0.3
30,739 + EX28DRAFT_3363 0.44 -0.1
30,887 + EX28DRAFT_3363 0.57 -0.3
30,888 - EX28DRAFT_3363 0.57 +0.2
30,888 - EX28DRAFT_3363 0.57 -0.5
30,900 - EX28DRAFT_3363 0.58 -0.4
30,947 + EX28DRAFT_3363 0.63 +0.2
31,002 - EX28DRAFT_3363 0.67 +0.6
31,032 + EX28DRAFT_3363 0.70 +0.2
31,032 + EX28DRAFT_3363 0.70 +0.4
31,033 - EX28DRAFT_3363 0.70 +0.0
31,040 + EX28DRAFT_3363 0.71 +0.5
31,040 + EX28DRAFT_3363 0.71 -0.4
31,041 - EX28DRAFT_3363 0.71 -0.5
31,041 - EX28DRAFT_3363 0.71 +0.0
31,045 + EX28DRAFT_3363 0.71 -0.0
31,075 + EX28DRAFT_3363 0.74 +0.3
31,096 - EX28DRAFT_3363 0.76 +0.3
31,129 + EX28DRAFT_3363 0.79 +3.0
31,129 + EX28DRAFT_3363 0.79 -0.1
31,129 + EX28DRAFT_3363 0.79 +0.7
31,129 + EX28DRAFT_3363 0.79 +0.9
31,130 - EX28DRAFT_3363 0.79 -0.9
31,155 + EX28DRAFT_3363 0.81 +0.4
31,156 - EX28DRAFT_3363 0.81 +0.6
31,231 + EX28DRAFT_3363 0.87 -0.5
31,232 - EX28DRAFT_3363 0.88 +0.4
31,333 - +0.8
31,407 + +0.4
31,521 + +0.2
31,600 + EX28DRAFT_3364 0.14 +0.3
31,797 - EX28DRAFT_3364 0.27 +0.3
31,843 - EX28DRAFT_3364 0.30 +0.9
31,939 - EX28DRAFT_3364 0.37 +0.0
31,939 - EX28DRAFT_3364 0.37 +3.8
32,149 - EX28DRAFT_3364 0.50 -0.1
32,205 - EX28DRAFT_3364 0.54 +0.3
32,340 - EX28DRAFT_3364 0.63 -0.1
32,340 - EX28DRAFT_3364 0.63 +0.8
32,340 - EX28DRAFT_3364 0.63 +0.9
32,379 + EX28DRAFT_3364 0.66 +0.0
32,521 - EX28DRAFT_3364 0.75 -1.2
32,650 - EX28DRAFT_3364 0.84 -0.9
32,882 + +0.5
33,370 + -0.5
33,455 - EX28DRAFT_3366 0.11 +0.0
33,720 + EX28DRAFT_3366 0.30 -0.1
33,720 + EX28DRAFT_3366 0.30 -0.3
33,734 + EX28DRAFT_3366 0.31 -0.4
33,803 + EX28DRAFT_3366 0.36 -0.6
33,806 - EX28DRAFT_3366 0.36 -0.5
33,806 - EX28DRAFT_3366 0.36 -0.2
33,807 + EX28DRAFT_3366 0.36 +0.0
33,807 + EX28DRAFT_3366 0.36 -1.2
33,808 - EX28DRAFT_3366 0.36 -0.4
33,808 - EX28DRAFT_3366 0.36 -0.6
33,808 - EX28DRAFT_3366 0.36 +0.6
33,809 + EX28DRAFT_3366 0.36 +0.2
33,809 + EX28DRAFT_3366 0.36 +0.2
33,809 + EX28DRAFT_3366 0.36 +0.2
33,809 + EX28DRAFT_3366 0.36 +0.2
33,810 - EX28DRAFT_3366 0.36 +0.5
33,810 - EX28DRAFT_3366 0.36 -0.2
33,810 - EX28DRAFT_3366 0.36 -0.4
33,888 - EX28DRAFT_3366 0.42 -0.2

Or see this region's nucleotide sequence