Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3327 and EX28DRAFT_3328 are separated by 73 nucleotides EX28DRAFT_3328 and EX28DRAFT_3329 are separated by 236 nucleotides EX28DRAFT_3329 and EX28DRAFT_3330 are separated by 169 nucleotides EX28DRAFT_3330 and EX28DRAFT_3331 are separated by 36 nucleotides EX28DRAFT_3331 and EX28DRAFT_3332 overlap by 4 nucleotides
EX28DRAFT_3327: EX28DRAFT_3327 - 23S, at 1 to 172
_3327
EX28DRAFT_3328: EX28DRAFT_3328 - 5S, at 246 to 361
_3328
EX28DRAFT_3329: EX28DRAFT_3329 - tRNA, at 598 to 673
_3329
EX28DRAFT_3330: EX28DRAFT_3330 - AraC-type DNA-binding domain-containing proteins, at 843 to 1,688
_3330
EX28DRAFT_3331: EX28DRAFT_3331 - Putative threonine efflux protein, at 1,725 to 2,315
_3331
EX28DRAFT_3332: EX28DRAFT_3332 - transcriptional regulator, TetR family, at 2,312 to 2,887
_3332
Position (kb) 0
1
2 Strain fitness (log2 ratio) -1
0
1 at 0.368 kb on + strand at 0.461 kb on + strand at 0.547 kb on + strand at 0.547 kb on + strand at 0.547 kb on + strand at 0.548 kb on - strand at 0.548 kb on - strand at 0.548 kb on - strand at 0.548 kb on - strand at 0.548 kb on - strand at 0.548 kb on - strand at 0.548 kb on - strand at 0.550 kb on - strand at 0.716 kb on + strand at 0.809 kb on - strand at 0.899 kb on + strand at 0.945 kb on - strand, within EX28DRAFT_3330 at 0.948 kb on + strand, within EX28DRAFT_3330 at 0.949 kb on - strand, within EX28DRAFT_3330 at 1.085 kb on + strand, within EX28DRAFT_3330 at 1.085 kb on + strand, within EX28DRAFT_3330 at 1.089 kb on + strand, within EX28DRAFT_3330 at 1.101 kb on + strand, within EX28DRAFT_3330 at 1.102 kb on - strand, within EX28DRAFT_3330 at 1.102 kb on - strand, within EX28DRAFT_3330 at 1.102 kb on - strand, within EX28DRAFT_3330 at 1.102 kb on - strand, within EX28DRAFT_3330 at 1.144 kb on - strand, within EX28DRAFT_3330 at 1.164 kb on + strand, within EX28DRAFT_3330 at 1.164 kb on + strand, within EX28DRAFT_3330 at 1.165 kb on - strand, within EX28DRAFT_3330 at 1.330 kb on + strand, within EX28DRAFT_3330 at 1.331 kb on - strand, within EX28DRAFT_3330 at 1.343 kb on - strand, within EX28DRAFT_3330 at 1.503 kb on - strand, within EX28DRAFT_3330 at 1.624 kb on - strand at 1.628 kb on + strand at 1.629 kb on - strand at 1.629 kb on - strand at 1.710 kb on - strand at 1.829 kb on + strand, within EX28DRAFT_3331 at 1.835 kb on - strand, within EX28DRAFT_3331 at 1.835 kb on - strand, within EX28DRAFT_3331 at 1.936 kb on + strand, within EX28DRAFT_3331 at 1.937 kb on - strand, within EX28DRAFT_3331 at 2.313 kb on + strand at 2.314 kb on - strand at 2.352 kb on - strand at 2.356 kb on + strand at 2.357 kb on - strand at 2.638 kb on + strand, within EX28DRAFT_3332
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 368 + +0.8 461 + -1.2 547 + -0.4 547 + -1.3 547 + +0.6 548 - +0.1 548 - -0.2 548 - -0.0 548 - +0.8 548 - +0.1 548 - -0.2 548 - -0.9 550 - -1.0 716 + -0.5 809 - +0.2 899 + +1.0 945 - EX28DRAFT_3330 0.12 +0.2 948 + EX28DRAFT_3330 0.12 -0.0 949 - EX28DRAFT_3330 0.13 -0.9 1,085 + EX28DRAFT_3330 0.29 -1.0 1,085 + EX28DRAFT_3330 0.29 -0.9 1,089 + EX28DRAFT_3330 0.29 -0.2 1,101 + EX28DRAFT_3330 0.30 -0.2 1,102 - EX28DRAFT_3330 0.31 +0.0 1,102 - EX28DRAFT_3330 0.31 -0.1 1,102 - EX28DRAFT_3330 0.31 -0.3 1,102 - EX28DRAFT_3330 0.31 +0.3 1,144 - EX28DRAFT_3330 0.36 -0.0 1,164 + EX28DRAFT_3330 0.38 +0.2 1,164 + EX28DRAFT_3330 0.38 +1.6 1,165 - EX28DRAFT_3330 0.38 +0.1 1,330 + EX28DRAFT_3330 0.58 -0.8 1,331 - EX28DRAFT_3330 0.58 -0.5 1,343 - EX28DRAFT_3330 0.59 -0.4 1,503 - EX28DRAFT_3330 0.78 -0.7 1,624 - -0.8 1,628 + +0.5 1,629 - -0.3 1,629 - -0.1 1,710 - +0.2 1,829 + EX28DRAFT_3331 0.18 -0.0 1,835 - EX28DRAFT_3331 0.19 -0.6 1,835 - EX28DRAFT_3331 0.19 -0.4 1,936 + EX28DRAFT_3331 0.36 +0.3 1,937 - EX28DRAFT_3331 0.36 +0.0 2,313 + -0.1 2,314 - -0.4 2,352 - -0.3 2,356 + -0.4 2,357 - +0.2 2,638 + EX28DRAFT_3332 0.57 +0.4
Or see this region's nucleotide sequence