Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3211 and EX28DRAFT_3212 are separated by 180 nucleotides EX28DRAFT_3212 and EX28DRAFT_3213 are separated by 108 nucleotides
EX28DRAFT_3211: EX28DRAFT_3211 - Superfamily II DNA and RNA helicases, at 509,871 to 511,766
_3211
EX28DRAFT_3212: EX28DRAFT_3212 - Lipoprotein NlpI, contains TPR repeats, at 511,947 to 512,831
_3212
EX28DRAFT_3213: EX28DRAFT_3213 - polyribonucleotide nucleotidyltransferase, at 512,940 to 515,078
_3213
Position (kb) 511
512
513 Strain fitness (log2 ratio) -2
-1
0
1 at 511.178 kb on + strand, within EX28DRAFT_3211 at 511.804 kb on - strand at 511.937 kb on - strand at 511.999 kb on - strand at 512.015 kb on - strand at 512.321 kb on - strand, within EX28DRAFT_3212 at 512.321 kb on - strand, within EX28DRAFT_3212 at 512.447 kb on - strand, within EX28DRAFT_3212 at 512.527 kb on - strand, within EX28DRAFT_3212 at 512.613 kb on - strand, within EX28DRAFT_3212 at 512.617 kb on + strand, within EX28DRAFT_3212 at 512.637 kb on + strand, within EX28DRAFT_3212 at 512.683 kb on - strand, within EX28DRAFT_3212 at 512.756 kb on + strand at 512.852 kb on + strand at 512.852 kb on + strand at 512.853 kb on - strand at 512.906 kb on + strand at 512.907 kb on - strand at 512.941 kb on + strand at 512.942 kb on - strand at 512.942 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 511,178 + EX28DRAFT_3211 0.69 +1.0 511,804 - -2.3 511,937 - -0.6 511,999 - +0.3 512,015 - +0.3 512,321 - EX28DRAFT_3212 0.42 -0.3 512,321 - EX28DRAFT_3212 0.42 -1.4 512,447 - EX28DRAFT_3212 0.56 -2.0 512,527 - EX28DRAFT_3212 0.66 -2.4 512,613 - EX28DRAFT_3212 0.75 -0.5 512,617 + EX28DRAFT_3212 0.76 -1.1 512,637 + EX28DRAFT_3212 0.78 -1.2 512,683 - EX28DRAFT_3212 0.83 +0.2 512,756 + -1.3 512,852 + +0.0 512,852 + +0.5 512,853 - -0.2 512,906 + -1.4 512,907 - +1.2 512,941 + -0.6 512,942 - -0.0 512,942 - +0.0
Or see this region's nucleotide sequence