Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3150 and EX28DRAFT_3151 are separated by 34 nucleotides EX28DRAFT_3151 and EX28DRAFT_3152 are separated by 178 nucleotides
EX28DRAFT_3150: EX28DRAFT_3150 - Transcriptional regulator, contains sigma factor-related N-terminal domain, at 450,729 to 451,697
_3150
EX28DRAFT_3151: EX28DRAFT_3151 - Sugar (pentulose and hexulose) kinases, at 451,732 to 453,327
_3151
EX28DRAFT_3152: EX28DRAFT_3152 - NADH:flavin oxidoreductases, Old Yellow Enzyme family, at 453,506 to 455,527
_3152
Position (kb) 451
452
453
454 Strain fitness (log2 ratio) -2
-1
0
1 at 450.820 kb on - strand at 450.974 kb on - strand, within EX28DRAFT_3150 at 451.022 kb on + strand, within EX28DRAFT_3150 at 451.207 kb on - strand, within EX28DRAFT_3150 at 451.209 kb on - strand, within EX28DRAFT_3150 at 451.301 kb on - strand, within EX28DRAFT_3150 at 451.417 kb on - strand, within EX28DRAFT_3150 at 451.419 kb on - strand, within EX28DRAFT_3150 at 451.419 kb on - strand, within EX28DRAFT_3150 at 451.444 kb on - strand, within EX28DRAFT_3150 at 451.696 kb on - strand at 451.745 kb on + strand at 451.746 kb on - strand at 451.751 kb on + strand at 451.997 kb on - strand, within EX28DRAFT_3151 at 451.997 kb on - strand, within EX28DRAFT_3151 at 452.107 kb on + strand, within EX28DRAFT_3151 at 452.186 kb on - strand, within EX28DRAFT_3151 at 452.350 kb on - strand, within EX28DRAFT_3151 at 452.722 kb on + strand, within EX28DRAFT_3151 at 452.723 kb on - strand, within EX28DRAFT_3151 at 452.783 kb on + strand, within EX28DRAFT_3151 at 452.784 kb on - strand, within EX28DRAFT_3151 at 452.805 kb on + strand, within EX28DRAFT_3151 at 452.806 kb on - strand, within EX28DRAFT_3151 at 452.816 kb on - strand, within EX28DRAFT_3151 at 452.835 kb on + strand, within EX28DRAFT_3151 at 452.835 kb on + strand, within EX28DRAFT_3151 at 453.056 kb on + strand, within EX28DRAFT_3151 at 453.194 kb on - strand at 453.226 kb on + strand at 453.227 kb on - strand at 453.341 kb on + strand at 453.341 kb on + strand at 453.342 kb on - strand at 453.342 kb on - strand at 453.342 kb on - strand at 453.396 kb on + strand at 453.461 kb on + strand at 453.461 kb on + strand at 453.490 kb on + strand at 453.505 kb on + strand at 453.505 kb on + strand at 453.506 kb on - strand at 453.506 kb on - strand at 453.506 kb on - strand at 453.638 kb on + strand at 453.638 kb on + strand at 453.639 kb on - strand at 453.639 kb on - strand at 453.837 kb on - strand, within EX28DRAFT_3152 at 454.007 kb on + strand, within EX28DRAFT_3152 at 454.070 kb on + strand, within EX28DRAFT_3152 at 454.138 kb on + strand, within EX28DRAFT_3152
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 450,820 - -0.4 450,974 - EX28DRAFT_3150 0.25 -0.9 451,022 + EX28DRAFT_3150 0.30 +0.6 451,207 - EX28DRAFT_3150 0.49 -0.6 451,209 - EX28DRAFT_3150 0.50 +0.3 451,301 - EX28DRAFT_3150 0.59 -0.0 451,417 - EX28DRAFT_3150 0.71 -1.1 451,419 - EX28DRAFT_3150 0.71 +0.6 451,419 - EX28DRAFT_3150 0.71 +0.0 451,444 - EX28DRAFT_3150 0.74 +0.5 451,696 - +0.0 451,745 + +0.2 451,746 - +0.3 451,751 + -0.2 451,997 - EX28DRAFT_3151 0.17 -1.4 451,997 - EX28DRAFT_3151 0.17 -0.4 452,107 + EX28DRAFT_3151 0.23 -0.2 452,186 - EX28DRAFT_3151 0.28 +1.0 452,350 - EX28DRAFT_3151 0.39 -0.1 452,722 + EX28DRAFT_3151 0.62 -0.6 452,723 - EX28DRAFT_3151 0.62 +0.5 452,783 + EX28DRAFT_3151 0.66 -0.1 452,784 - EX28DRAFT_3151 0.66 -0.1 452,805 + EX28DRAFT_3151 0.67 -0.2 452,806 - EX28DRAFT_3151 0.67 +0.3 452,816 - EX28DRAFT_3151 0.68 -2.1 452,835 + EX28DRAFT_3151 0.69 -1.0 452,835 + EX28DRAFT_3151 0.69 +0.3 453,056 + EX28DRAFT_3151 0.83 +0.6 453,194 - +0.9 453,226 + +0.1 453,227 - +1.2 453,341 + -0.1 453,341 + -0.5 453,342 - -0.7 453,342 - +0.1 453,342 - -1.5 453,396 + +0.0 453,461 + -1.0 453,461 + -0.3 453,490 + +0.1 453,505 + +0.2 453,505 + +0.7 453,506 - -0.1 453,506 - +0.1 453,506 - +0.4 453,638 + -0.0 453,638 + -0.6 453,639 - -0.3 453,639 - +0.3 453,837 - EX28DRAFT_3152 0.16 -0.2 454,007 + EX28DRAFT_3152 0.25 -0.3 454,070 + EX28DRAFT_3152 0.28 +0.2 454,138 + EX28DRAFT_3152 0.31 +0.7
Or see this region's nucleotide sequence