Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3088 and EX28DRAFT_3089 are separated by 40 nucleotides EX28DRAFT_3089 and EX28DRAFT_3090 are separated by 147 nucleotides
EX28DRAFT_3088: EX28DRAFT_3088 - Arabinose efflux permease, at 399,775 to 401,241
_3088
EX28DRAFT_3089: EX28DRAFT_3089 - Transcriptional regulators, at 401,282 to 401,704
_3089
EX28DRAFT_3090: EX28DRAFT_3090 - Esterase/lipase, at 401,852 to 402,865
_3090
Position (kb) 401
402 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 400.285 kb on - strand, within EX28DRAFT_3088 at 400.364 kb on - strand, within EX28DRAFT_3088 at 400.462 kb on + strand, within EX28DRAFT_3088 at 400.462 kb on + strand, within EX28DRAFT_3088 at 400.462 kb on + strand, within EX28DRAFT_3088 at 400.464 kb on + strand, within EX28DRAFT_3088 at 400.465 kb on - strand, within EX28DRAFT_3088 at 400.538 kb on - strand, within EX28DRAFT_3088 at 400.539 kb on + strand, within EX28DRAFT_3088 at 400.539 kb on + strand, within EX28DRAFT_3088 at 400.539 kb on + strand, within EX28DRAFT_3088 at 400.540 kb on - strand, within EX28DRAFT_3088 at 400.597 kb on - strand, within EX28DRAFT_3088 at 400.639 kb on + strand, within EX28DRAFT_3088 at 400.639 kb on + strand, within EX28DRAFT_3088 at 400.640 kb on - strand, within EX28DRAFT_3088 at 400.679 kb on + strand, within EX28DRAFT_3088 at 400.680 kb on - strand, within EX28DRAFT_3088 at 400.694 kb on - strand, within EX28DRAFT_3088 at 400.694 kb on - strand, within EX28DRAFT_3088 at 400.825 kb on + strand, within EX28DRAFT_3088 at 401.250 kb on + strand at 401.250 kb on + strand at 401.251 kb on - strand at 401.251 kb on - strand at 401.251 kb on - strand at 401.283 kb on + strand at 401.283 kb on + strand at 401.284 kb on - strand at 401.284 kb on - strand at 401.284 kb on - strand at 401.418 kb on - strand, within EX28DRAFT_3089 at 401.832 kb on - strand at 401.848 kb on + strand at 401.947 kb on - strand at 401.959 kb on + strand, within EX28DRAFT_3090 at 402.157 kb on + strand, within EX28DRAFT_3090 at 402.158 kb on - strand, within EX28DRAFT_3090 at 402.301 kb on + strand, within EX28DRAFT_3090 at 402.499 kb on + strand, within EX28DRAFT_3090 at 402.509 kb on + strand, within EX28DRAFT_3090 at 402.510 kb on - strand, within EX28DRAFT_3090 at 402.530 kb on + strand, within EX28DRAFT_3090 at 402.572 kb on + strand, within EX28DRAFT_3090 at 402.573 kb on - strand, within EX28DRAFT_3090 at 402.602 kb on - strand, within EX28DRAFT_3090
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 400,285 - EX28DRAFT_3088 0.35 -0.2 400,364 - EX28DRAFT_3088 0.40 -0.1 400,462 + EX28DRAFT_3088 0.47 +0.2 400,462 + EX28DRAFT_3088 0.47 +0.1 400,462 + EX28DRAFT_3088 0.47 +0.7 400,464 + EX28DRAFT_3088 0.47 -0.4 400,465 - EX28DRAFT_3088 0.47 -0.3 400,538 - EX28DRAFT_3088 0.52 +0.3 400,539 + EX28DRAFT_3088 0.52 -0.2 400,539 + EX28DRAFT_3088 0.52 +1.7 400,539 + EX28DRAFT_3088 0.52 -0.6 400,540 - EX28DRAFT_3088 0.52 +0.2 400,597 - EX28DRAFT_3088 0.56 +0.2 400,639 + EX28DRAFT_3088 0.59 -0.7 400,639 + EX28DRAFT_3088 0.59 -0.0 400,640 - EX28DRAFT_3088 0.59 -0.3 400,679 + EX28DRAFT_3088 0.62 -0.2 400,680 - EX28DRAFT_3088 0.62 -0.3 400,694 - EX28DRAFT_3088 0.63 -0.1 400,694 - EX28DRAFT_3088 0.63 +0.1 400,825 + EX28DRAFT_3088 0.72 +0.9 401,250 + +0.3 401,250 + +0.3 401,251 - -0.1 401,251 - -0.2 401,251 - +0.1 401,283 + -1.1 401,283 + +1.0 401,284 - +0.6 401,284 - -0.6 401,284 - +0.6 401,418 - EX28DRAFT_3089 0.32 -1.0 401,832 - -1.1 401,848 + -1.0 401,947 - +0.4 401,959 + EX28DRAFT_3090 0.11 +0.2 402,157 + EX28DRAFT_3090 0.30 +1.2 402,158 - EX28DRAFT_3090 0.30 -0.4 402,301 + EX28DRAFT_3090 0.44 +0.5 402,499 + EX28DRAFT_3090 0.64 +1.0 402,509 + EX28DRAFT_3090 0.65 -3.5 402,510 - EX28DRAFT_3090 0.65 +2.0 402,530 + EX28DRAFT_3090 0.67 +0.2 402,572 + EX28DRAFT_3090 0.71 +0.0 402,573 - EX28DRAFT_3090 0.71 -0.2 402,602 - EX28DRAFT_3090 0.74 +2.8
Or see this region's nucleotide sequence