Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3018 and EX28DRAFT_3019 are separated by 8 nucleotides EX28DRAFT_3019 and EX28DRAFT_3020 overlap by 8 nucleotides
EX28DRAFT_3018: EX28DRAFT_3018 - poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA, at 326,233 to 328,671
_3018
EX28DRAFT_3019: EX28DRAFT_3019 - poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, at 328,680 to 330,617
_3019
EX28DRAFT_3020: EX28DRAFT_3020 - poly-beta-1,6 N-acetyl-D-glucosamine synthase, at 330,610 to 331,938
_3020
Position (kb) 328
329
330
331 Strain fitness (log2 ratio) -1
0
1
2
3 at 328.087 kb on + strand, within EX28DRAFT_3018 at 328.087 kb on + strand, within EX28DRAFT_3018 at 328.228 kb on + strand, within EX28DRAFT_3018 at 328.266 kb on + strand, within EX28DRAFT_3018 at 328.282 kb on + strand, within EX28DRAFT_3018 at 328.282 kb on + strand, within EX28DRAFT_3018 at 328.282 kb on + strand, within EX28DRAFT_3018 at 328.282 kb on + strand, within EX28DRAFT_3018 at 328.282 kb on + strand, within EX28DRAFT_3018 at 328.283 kb on - strand, within EX28DRAFT_3018 at 328.283 kb on - strand, within EX28DRAFT_3018 at 328.385 kb on - strand, within EX28DRAFT_3018 at 328.387 kb on + strand, within EX28DRAFT_3018 at 328.445 kb on - strand at 328.445 kb on - strand at 328.499 kb on - strand at 328.572 kb on + strand at 328.572 kb on + strand at 328.669 kb on + strand at 328.670 kb on - strand at 328.670 kb on - strand at 328.679 kb on + strand at 328.680 kb on - strand at 328.802 kb on + strand at 328.876 kb on - strand, within EX28DRAFT_3019 at 328.912 kb on + strand, within EX28DRAFT_3019 at 328.913 kb on - strand, within EX28DRAFT_3019 at 329.231 kb on + strand, within EX28DRAFT_3019 at 329.232 kb on - strand, within EX28DRAFT_3019 at 329.304 kb on + strand, within EX28DRAFT_3019 at 329.321 kb on + strand, within EX28DRAFT_3019 at 329.325 kb on + strand, within EX28DRAFT_3019 at 329.325 kb on + strand, within EX28DRAFT_3019 at 329.325 kb on + strand, within EX28DRAFT_3019 at 329.326 kb on - strand, within EX28DRAFT_3019 at 329.450 kb on + strand, within EX28DRAFT_3019 at 329.647 kb on - strand, within EX28DRAFT_3019 at 329.652 kb on + strand, within EX28DRAFT_3019 at 329.709 kb on + strand, within EX28DRAFT_3019 at 329.785 kb on - strand, within EX28DRAFT_3019 at 329.785 kb on - strand, within EX28DRAFT_3019 at 329.785 kb on - strand, within EX28DRAFT_3019 at 329.826 kb on - strand, within EX28DRAFT_3019 at 329.976 kb on - strand, within EX28DRAFT_3019 at 330.027 kb on + strand, within EX28DRAFT_3019 at 330.027 kb on + strand, within EX28DRAFT_3019 at 330.028 kb on - strand, within EX28DRAFT_3019 at 330.028 kb on - strand, within EX28DRAFT_3019 at 330.215 kb on + strand, within EX28DRAFT_3019 at 330.215 kb on + strand, within EX28DRAFT_3019 at 330.292 kb on - strand, within EX28DRAFT_3019 at 330.407 kb on + strand, within EX28DRAFT_3019 at 330.522 kb on + strand at 330.595 kb on - strand at 330.636 kb on + strand at 330.636 kb on + strand at 330.641 kb on + strand at 330.642 kb on - strand at 330.922 kb on - strand, within EX28DRAFT_3020 at 330.924 kb on - strand, within EX28DRAFT_3020 at 330.924 kb on - strand, within EX28DRAFT_3020 at 331.280 kb on - strand, within EX28DRAFT_3020 at 331.280 kb on - strand, within EX28DRAFT_3020 at 331.585 kb on + strand, within EX28DRAFT_3020 at 331.586 kb on - strand, within EX28DRAFT_3020 at 331.616 kb on - strand, within EX28DRAFT_3020
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 328,087 + EX28DRAFT_3018 0.76 +0.1 328,087 + EX28DRAFT_3018 0.76 -0.3 328,228 + EX28DRAFT_3018 0.82 -0.3 328,266 + EX28DRAFT_3018 0.83 -0.3 328,282 + EX28DRAFT_3018 0.84 -0.5 328,282 + EX28DRAFT_3018 0.84 -0.7 328,282 + EX28DRAFT_3018 0.84 +0.0 328,282 + EX28DRAFT_3018 0.84 -0.0 328,282 + EX28DRAFT_3018 0.84 +1.0 328,283 - EX28DRAFT_3018 0.84 -0.0 328,283 - EX28DRAFT_3018 0.84 -0.3 328,385 - EX28DRAFT_3018 0.88 +0.3 328,387 + EX28DRAFT_3018 0.88 -0.8 328,445 - +0.1 328,445 - -1.5 328,499 - -0.5 328,572 + +0.5 328,572 + +0.3 328,669 + -0.1 328,670 - -0.2 328,670 - -0.7 328,679 + +0.5 328,680 - -0.8 328,802 + +0.1 328,876 - EX28DRAFT_3019 0.10 -0.5 328,912 + EX28DRAFT_3019 0.12 +1.6 328,913 - EX28DRAFT_3019 0.12 +0.0 329,231 + EX28DRAFT_3019 0.28 +1.0 329,232 - EX28DRAFT_3019 0.28 -0.3 329,304 + EX28DRAFT_3019 0.32 +1.5 329,321 + EX28DRAFT_3019 0.33 +0.6 329,325 + EX28DRAFT_3019 0.33 -0.9 329,325 + EX28DRAFT_3019 0.33 -0.3 329,325 + EX28DRAFT_3019 0.33 +0.6 329,326 - EX28DRAFT_3019 0.33 -0.8 329,450 + EX28DRAFT_3019 0.40 +0.8 329,647 - EX28DRAFT_3019 0.50 +0.1 329,652 + EX28DRAFT_3019 0.50 +0.1 329,709 + EX28DRAFT_3019 0.53 -0.1 329,785 - EX28DRAFT_3019 0.57 +0.8 329,785 - EX28DRAFT_3019 0.57 +0.4 329,785 - EX28DRAFT_3019 0.57 +0.3 329,826 - EX28DRAFT_3019 0.59 -0.0 329,976 - EX28DRAFT_3019 0.67 +0.5 330,027 + EX28DRAFT_3019 0.70 +0.8 330,027 + EX28DRAFT_3019 0.70 +0.1 330,028 - EX28DRAFT_3019 0.70 +0.0 330,028 - EX28DRAFT_3019 0.70 -0.4 330,215 + EX28DRAFT_3019 0.79 +3.6 330,215 + EX28DRAFT_3019 0.79 -0.1 330,292 - EX28DRAFT_3019 0.83 +1.1 330,407 + EX28DRAFT_3019 0.89 -1.5 330,522 + -0.4 330,595 - +1.0 330,636 + -0.5 330,636 + -0.6 330,641 + +0.9 330,642 - +0.3 330,922 - EX28DRAFT_3020 0.23 -0.5 330,924 - EX28DRAFT_3020 0.24 -0.4 330,924 - EX28DRAFT_3020 0.24 -0.3 331,280 - EX28DRAFT_3020 0.50 +0.5 331,280 - EX28DRAFT_3020 0.50 +0.3 331,585 + EX28DRAFT_3020 0.73 +0.8 331,586 - EX28DRAFT_3020 0.73 +0.0 331,616 - EX28DRAFT_3020 0.76 -0.1
Or see this region's nucleotide sequence