Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3016

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3013 and EX28DRAFT_3014 are separated by 95 nucleotidesEX28DRAFT_3014 and EX28DRAFT_3015 are separated by 139 nucleotidesEX28DRAFT_3015 and EX28DRAFT_3016 are separated by 94 nucleotidesEX28DRAFT_3016 and EX28DRAFT_3017 are separated by 170 nucleotides EX28DRAFT_3013: EX28DRAFT_3013 - Uncharacterized membrane protein, possible Na+ channel or pump, at 322,967 to 323,683 _3013 EX28DRAFT_3014: EX28DRAFT_3014 - tRNA, at 323,779 to 323,854 _3014 EX28DRAFT_3015: EX28DRAFT_3015 - hypothetical protein, at 323,994 to 324,386 _3015 EX28DRAFT_3016: EX28DRAFT_3016 - Protein of unknown function (DUF1493), at 324,481 to 324,861 _3016 EX28DRAFT_3017: EX28DRAFT_3017 - Bacterial regulatory proteins, luxR family, at 325,032 to 325,610 _3017 Position (kb) 324 325Strain fitness (log2 ratio) -2 -1 0 1 2at 323.599 kb on + strand, within EX28DRAFT_3013at 323.891 kb on + strandat 323.891 kb on + strandat 323.893 kb on + strandat 323.950 kb on - strandat 323.970 kb on + strandat 323.970 kb on + strandat 323.970 kb on + strandat 323.970 kb on + strandat 324.000 kb on - strandat 324.000 kb on - strandat 324.000 kb on - strandat 324.089 kb on + strand, within EX28DRAFT_3015at 324.089 kb on + strand, within EX28DRAFT_3015at 324.174 kb on - strand, within EX28DRAFT_3015at 324.174 kb on - strand, within EX28DRAFT_3015at 324.174 kb on - strand, within EX28DRAFT_3015at 324.182 kb on + strand, within EX28DRAFT_3015at 324.259 kb on + strand, within EX28DRAFT_3015at 324.259 kb on + strand, within EX28DRAFT_3015at 324.376 kb on + strandat 324.377 kb on - strandat 324.381 kb on - strandat 324.402 kb on - strandat 324.438 kb on - strandat 324.454 kb on - strandat 324.509 kb on - strandat 324.526 kb on - strand, within EX28DRAFT_3016at 324.528 kb on - strand, within EX28DRAFT_3016at 324.528 kb on - strand, within EX28DRAFT_3016at 324.585 kb on + strand, within EX28DRAFT_3016at 324.585 kb on + strand, within EX28DRAFT_3016at 324.585 kb on + strand, within EX28DRAFT_3016at 324.585 kb on + strand, within EX28DRAFT_3016at 324.585 kb on + strand, within EX28DRAFT_3016at 324.586 kb on - strand, within EX28DRAFT_3016at 324.586 kb on - strand, within EX28DRAFT_3016at 324.612 kb on - strand, within EX28DRAFT_3016at 324.674 kb on + strand, within EX28DRAFT_3016at 324.674 kb on + strand, within EX28DRAFT_3016at 324.755 kb on - strand, within EX28DRAFT_3016at 324.805 kb on - strand, within EX28DRAFT_3016at 324.836 kb on - strandat 324.857 kb on - strandat 324.857 kb on - strandat 324.901 kb on - strandat 324.901 kb on - strandat 324.941 kb on - strandat 324.990 kb on - strandat 325.009 kb on + strandat 325.009 kb on + strandat 325.009 kb on + strandat 325.010 kb on - strandat 325.010 kb on - strandat 325.236 kb on - strand, within EX28DRAFT_3017at 325.248 kb on - strand, within EX28DRAFT_3017at 325.303 kb on - strand, within EX28DRAFT_3017at 325.344 kb on + strand, within EX28DRAFT_3017at 325.344 kb on + strand, within EX28DRAFT_3017at 325.345 kb on - strand, within EX28DRAFT_3017at 325.352 kb on + strand, within EX28DRAFT_3017at 325.438 kb on + strand, within EX28DRAFT_3017at 325.438 kb on + strand, within EX28DRAFT_3017at 325.445 kb on - strand, within EX28DRAFT_3017at 325.446 kb on + strand, within EX28DRAFT_3017at 325.506 kb on + strand, within EX28DRAFT_3017at 325.506 kb on + strand, within EX28DRAFT_3017

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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323,599 + EX28DRAFT_3013 0.88 -1.0
323,891 + +0.6
323,891 + +1.2
323,893 + -0.0
323,950 - -2.1
323,970 + -1.2
323,970 + -0.4
323,970 + +0.4
323,970 + -0.1
324,000 - +0.6
324,000 - +0.1
324,000 - -0.1
324,089 + EX28DRAFT_3015 0.24 -1.5
324,089 + EX28DRAFT_3015 0.24 +0.2
324,174 - EX28DRAFT_3015 0.46 -0.9
324,174 - EX28DRAFT_3015 0.46 -0.3
324,174 - EX28DRAFT_3015 0.46 -0.7
324,182 + EX28DRAFT_3015 0.48 -0.2
324,259 + EX28DRAFT_3015 0.67 -1.6
324,259 + EX28DRAFT_3015 0.67 +0.0
324,376 + -0.5
324,377 - -0.4
324,381 - +0.0
324,402 - -0.4
324,438 - -0.6
324,454 - +0.1
324,509 - +0.2
324,526 - EX28DRAFT_3016 0.12 +0.8
324,528 - EX28DRAFT_3016 0.12 -0.6
324,528 - EX28DRAFT_3016 0.12 -0.6
324,585 + EX28DRAFT_3016 0.27 +0.7
324,585 + EX28DRAFT_3016 0.27 +0.1
324,585 + EX28DRAFT_3016 0.27 +0.5
324,585 + EX28DRAFT_3016 0.27 -0.1
324,585 + EX28DRAFT_3016 0.27 -1.5
324,586 - EX28DRAFT_3016 0.28 +0.3
324,586 - EX28DRAFT_3016 0.28 -0.3
324,612 - EX28DRAFT_3016 0.34 +0.1
324,674 + EX28DRAFT_3016 0.51 +0.6
324,674 + EX28DRAFT_3016 0.51 +0.5
324,755 - EX28DRAFT_3016 0.72 +1.6
324,805 - EX28DRAFT_3016 0.85 -0.3
324,836 - +0.4
324,857 - +0.7
324,857 - +0.3
324,901 - +0.3
324,901 - -1.5
324,941 - -0.3
324,990 - -0.9
325,009 + -0.2
325,009 + +0.1
325,009 + +0.3
325,010 - +0.1
325,010 - -0.6
325,236 - EX28DRAFT_3017 0.35 -0.0
325,248 - EX28DRAFT_3017 0.37 -0.1
325,303 - EX28DRAFT_3017 0.47 -0.4
325,344 + EX28DRAFT_3017 0.54 -0.3
325,344 + EX28DRAFT_3017 0.54 -0.5
325,345 - EX28DRAFT_3017 0.54 -0.7
325,352 + EX28DRAFT_3017 0.55 -0.7
325,438 + EX28DRAFT_3017 0.70 -0.5
325,438 + EX28DRAFT_3017 0.70 -1.5
325,445 - EX28DRAFT_3017 0.71 +0.5
325,446 + EX28DRAFT_3017 0.72 -0.1
325,506 + EX28DRAFT_3017 0.82 +2.6
325,506 + EX28DRAFT_3017 0.82 -1.2

Or see this region's nucleotide sequence