Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2943 and EX28DRAFT_2944 are separated by 5 nucleotides EX28DRAFT_2944 and EX28DRAFT_2945 are separated by 28 nucleotides
EX28DRAFT_2943: EX28DRAFT_2943 - single-stranded-DNA-specific exonuclease RecJ, at 253,527 to 255,260
_2943
EX28DRAFT_2944: EX28DRAFT_2944 - Protein-disulfide isomerase, at 255,266 to 255,979
_2944
EX28DRAFT_2945: EX28DRAFT_2945 - tyrosine recombinase XerD, at 256,008 to 256,904
_2945
Position (kb) 255
256 Strain fitness (log2 ratio) -2
-1
0
1
2 at 254.364 kb on - strand, within EX28DRAFT_2943 at 254.364 kb on - strand, within EX28DRAFT_2943 at 254.364 kb on - strand, within EX28DRAFT_2943 at 254.505 kb on + strand, within EX28DRAFT_2943 at 254.526 kb on - strand, within EX28DRAFT_2943 at 254.534 kb on + strand, within EX28DRAFT_2943 at 254.534 kb on + strand, within EX28DRAFT_2943 at 254.535 kb on - strand, within EX28DRAFT_2943 at 254.587 kb on + strand, within EX28DRAFT_2943 at 254.588 kb on - strand, within EX28DRAFT_2943 at 254.600 kb on + strand, within EX28DRAFT_2943 at 254.948 kb on - strand, within EX28DRAFT_2943 at 255.268 kb on - strand at 255.272 kb on - strand at 255.503 kb on - strand, within EX28DRAFT_2944 at 255.585 kb on + strand, within EX28DRAFT_2944 at 255.673 kb on + strand, within EX28DRAFT_2944 at 255.763 kb on - strand, within EX28DRAFT_2944 at 255.934 kb on + strand at 255.979 kb on + strand at 256.170 kb on + strand, within EX28DRAFT_2945 at 256.477 kb on + strand, within EX28DRAFT_2945 at 256.478 kb on - strand, within EX28DRAFT_2945 at 256.543 kb on - strand, within EX28DRAFT_2945 at 256.936 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 254,364 - EX28DRAFT_2943 0.48 +1.9 254,364 - EX28DRAFT_2943 0.48 -2.0 254,364 - EX28DRAFT_2943 0.48 +1.0 254,505 + EX28DRAFT_2943 0.56 -1.1 254,526 - EX28DRAFT_2943 0.58 -1.3 254,534 + EX28DRAFT_2943 0.58 -0.2 254,534 + EX28DRAFT_2943 0.58 -0.5 254,535 - EX28DRAFT_2943 0.58 -1.2 254,587 + EX28DRAFT_2943 0.61 -0.3 254,588 - EX28DRAFT_2943 0.61 -1.3 254,600 + EX28DRAFT_2943 0.62 -0.8 254,948 - EX28DRAFT_2943 0.82 -1.2 255,268 - -0.6 255,272 - +0.7 255,503 - EX28DRAFT_2944 0.33 -0.0 255,585 + EX28DRAFT_2944 0.45 +0.6 255,673 + EX28DRAFT_2944 0.57 +0.3 255,763 - EX28DRAFT_2944 0.70 +1.9 255,934 + +2.0 255,979 + -0.2 256,170 + EX28DRAFT_2945 0.18 -1.3 256,477 + EX28DRAFT_2945 0.52 -2.4 256,478 - EX28DRAFT_2945 0.52 -0.8 256,543 - EX28DRAFT_2945 0.60 -2.1 256,936 + +0.3
Or see this region's nucleotide sequence