Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1986 and EX28DRAFT_1987 are separated by 63 nucleotides EX28DRAFT_1987 and EX28DRAFT_1988 are separated by 186 nucleotides
EX28DRAFT_1986: EX28DRAFT_1986 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 1,987,619 to 1,988,674
_1986
EX28DRAFT_1987: EX28DRAFT_1987 - Uncharacterized protein conserved in bacteria, at 1,988,738 to 1,989,190
_1987
EX28DRAFT_1988: EX28DRAFT_1988 - Predicted ATP-dependent protease, at 1,989,377 to 1,991,137
_1988
Position (kb) 1988
1989
1990 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 1987.995 kb on + strand, within EX28DRAFT_1986 at 1988.358 kb on - strand, within EX28DRAFT_1986 at 1988.656 kb on - strand at 1988.672 kb on + strand at 1988.672 kb on + strand at 1988.687 kb on + strand at 1988.687 kb on + strand at 1988.716 kb on - strand at 1988.796 kb on + strand, within EX28DRAFT_1987 at 1988.797 kb on - strand, within EX28DRAFT_1987 at 1988.806 kb on + strand, within EX28DRAFT_1987 at 1988.807 kb on - strand, within EX28DRAFT_1987 at 1988.807 kb on - strand, within EX28DRAFT_1987 at 1988.991 kb on - strand, within EX28DRAFT_1987 at 1989.142 kb on - strand, within EX28DRAFT_1987 at 1989.205 kb on + strand at 1989.337 kb on + strand at 1989.340 kb on - strand at 1989.340 kb on - strand at 1989.352 kb on + strand at 1989.385 kb on + strand at 1989.582 kb on - strand, within EX28DRAFT_1988 at 1989.656 kb on - strand, within EX28DRAFT_1988 at 1989.781 kb on + strand, within EX28DRAFT_1988 at 1989.782 kb on - strand, within EX28DRAFT_1988 at 1989.813 kb on + strand, within EX28DRAFT_1988 at 1989.814 kb on - strand, within EX28DRAFT_1988 at 1989.967 kb on + strand, within EX28DRAFT_1988 at 1990.061 kb on + strand, within EX28DRAFT_1988 at 1990.061 kb on + strand, within EX28DRAFT_1988 at 1990.062 kb on - strand, within EX28DRAFT_1988 at 1990.062 kb on - strand, within EX28DRAFT_1988 at 1990.071 kb on - strand, within EX28DRAFT_1988
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 1,987,995 + EX28DRAFT_1986 0.36 -2.5 1,988,358 - EX28DRAFT_1986 0.70 -5.0 1,988,656 - -4.0 1,988,672 + +0.3 1,988,672 + +0.4 1,988,687 + -0.6 1,988,687 + -0.8 1,988,716 - -0.9 1,988,796 + EX28DRAFT_1987 0.13 -0.7 1,988,797 - EX28DRAFT_1987 0.13 -0.6 1,988,806 + EX28DRAFT_1987 0.15 -0.0 1,988,807 - EX28DRAFT_1987 0.15 +0.0 1,988,807 - EX28DRAFT_1987 0.15 -1.1 1,988,991 - EX28DRAFT_1987 0.56 -1.6 1,989,142 - EX28DRAFT_1987 0.89 -1.6 1,989,205 + -1.0 1,989,337 + -0.9 1,989,340 - -0.9 1,989,340 - +0.7 1,989,352 + -0.1 1,989,385 + -0.3 1,989,582 - EX28DRAFT_1988 0.12 -0.3 1,989,656 - EX28DRAFT_1988 0.16 -0.1 1,989,781 + EX28DRAFT_1988 0.23 -0.1 1,989,782 - EX28DRAFT_1988 0.23 -1.8 1,989,813 + EX28DRAFT_1988 0.25 +0.1 1,989,814 - EX28DRAFT_1988 0.25 -0.4 1,989,967 + EX28DRAFT_1988 0.34 +2.5 1,990,061 + EX28DRAFT_1988 0.39 +0.0 1,990,061 + EX28DRAFT_1988 0.39 -0.1 1,990,062 - EX28DRAFT_1988 0.39 +0.6 1,990,062 - EX28DRAFT_1988 0.39 +0.5 1,990,071 - EX28DRAFT_1988 0.39 -2.6
Or see this region's nucleotide sequence