Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1893

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1891 and EX28DRAFT_1892 are separated by 26 nucleotidesEX28DRAFT_1892 and EX28DRAFT_1893 are separated by 43 nucleotidesEX28DRAFT_1893 and EX28DRAFT_1894 are separated by 90 nucleotidesEX28DRAFT_1894 and EX28DRAFT_1895 are separated by 21 nucleotides EX28DRAFT_1891: EX28DRAFT_1891 - Type VIII secretion system (T8SS), CsgF protein, at 1,901,872 to 1,902,285 _1891 EX28DRAFT_1892: EX28DRAFT_1892 - Uncharacterized protein involved in formation of curli polymers, at 1,902,312 to 1,903,145 _1892 EX28DRAFT_1893: EX28DRAFT_1893 - Protein of unknown function (DUF1097), at 1,903,189 to 1,903,680 _1893 EX28DRAFT_1894: EX28DRAFT_1894 - Uncharacterized component of anaerobic dehydrogenases, at 1,903,771 to 1,904,322 _1894 EX28DRAFT_1895: EX28DRAFT_1895 - Histidinol phosphatase and related hydrolases of the PHP family, at 1,904,344 to 1,905,081 _1895 Position (kb) 1903 1904Strain fitness (log2 ratio) -2 -1 0 1at 1902.290 kb on + strandat 1902.294 kb on + strandat 1902.294 kb on + strandat 1902.294 kb on + strandat 1902.295 kb on - strandat 1902.295 kb on - strandat 1902.329 kb on - strandat 1902.329 kb on - strandat 1902.347 kb on - strandat 1902.361 kb on + strandat 1902.374 kb on + strandat 1902.374 kb on + strandat 1902.374 kb on + strandat 1902.392 kb on + strandat 1902.398 kb on - strand, within EX28DRAFT_1892at 1902.457 kb on + strand, within EX28DRAFT_1892at 1902.472 kb on - strand, within EX28DRAFT_1892at 1902.472 kb on - strand, within EX28DRAFT_1892at 1902.519 kb on - strand, within EX28DRAFT_1892at 1902.665 kb on + strand, within EX28DRAFT_1892at 1902.857 kb on + strand, within EX28DRAFT_1892at 1903.033 kb on - strand, within EX28DRAFT_1892at 1903.036 kb on + strand, within EX28DRAFT_1892at 1903.037 kb on - strand, within EX28DRAFT_1892at 1903.049 kb on + strand, within EX28DRAFT_1892at 1903.051 kb on + strand, within EX28DRAFT_1892at 1903.051 kb on + strand, within EX28DRAFT_1892at 1903.052 kb on - strand, within EX28DRAFT_1892at 1903.175 kb on + strandat 1903.244 kb on - strand, within EX28DRAFT_1893at 1903.301 kb on - strand, within EX28DRAFT_1893at 1903.347 kb on + strand, within EX28DRAFT_1893at 1903.428 kb on - strand, within EX28DRAFT_1893at 1903.489 kb on - strand, within EX28DRAFT_1893at 1903.518 kb on + strand, within EX28DRAFT_1893at 1903.519 kb on - strand, within EX28DRAFT_1893at 1903.660 kb on + strandat 1903.661 kb on - strandat 1903.661 kb on - strandat 1903.661 kb on - strandat 1903.661 kb on - strandat 1903.661 kb on - strandat 1903.661 kb on - strandat 1903.663 kb on + strandat 1903.684 kb on - strandat 1904.234 kb on - strand, within EX28DRAFT_1894at 1904.279 kb on + strandat 1904.279 kb on + strandat 1904.280 kb on - strandat 1904.345 kb on + strandat 1904.416 kb on + strandat 1904.446 kb on - strand, within EX28DRAFT_1895at 1904.446 kb on - strand, within EX28DRAFT_1895at 1904.608 kb on - strand, within EX28DRAFT_1895at 1904.608 kb on - strand, within EX28DRAFT_1895

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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1,902,290 + -0.8
1,902,294 + -0.0
1,902,294 + -0.0
1,902,294 + -0.7
1,902,295 - -0.0
1,902,295 - +0.2
1,902,329 - -0.2
1,902,329 - +1.4
1,902,347 - -2.3
1,902,361 + -1.7
1,902,374 + -1.0
1,902,374 + -0.5
1,902,374 + -0.2
1,902,392 + -0.5
1,902,398 - EX28DRAFT_1892 0.10 +1.0
1,902,457 + EX28DRAFT_1892 0.17 -1.4
1,902,472 - EX28DRAFT_1892 0.19 -1.8
1,902,472 - EX28DRAFT_1892 0.19 -1.2
1,902,519 - EX28DRAFT_1892 0.25 +0.2
1,902,665 + EX28DRAFT_1892 0.42 +0.7
1,902,857 + EX28DRAFT_1892 0.65 -0.1
1,903,033 - EX28DRAFT_1892 0.86 +1.5
1,903,036 + EX28DRAFT_1892 0.87 -1.6
1,903,037 - EX28DRAFT_1892 0.87 +0.1
1,903,049 + EX28DRAFT_1892 0.88 +0.7
1,903,051 + EX28DRAFT_1892 0.89 -0.4
1,903,051 + EX28DRAFT_1892 0.89 +0.6
1,903,052 - EX28DRAFT_1892 0.89 -0.7
1,903,175 + -0.0
1,903,244 - EX28DRAFT_1893 0.11 +0.5
1,903,301 - EX28DRAFT_1893 0.23 +0.6
1,903,347 + EX28DRAFT_1893 0.32 +1.2
1,903,428 - EX28DRAFT_1893 0.49 +0.7
1,903,489 - EX28DRAFT_1893 0.61 -1.6
1,903,518 + EX28DRAFT_1893 0.67 +1.4
1,903,519 - EX28DRAFT_1893 0.67 +0.6
1,903,660 + +0.7
1,903,661 - +0.7
1,903,661 - +0.5
1,903,661 - +0.3
1,903,661 - +0.6
1,903,661 - +0.0
1,903,661 - +0.0
1,903,663 + +0.6
1,903,684 - -0.8
1,904,234 - EX28DRAFT_1894 0.84 -0.2
1,904,279 + +0.1
1,904,279 + +0.1
1,904,280 - +0.1
1,904,345 + +0.0
1,904,416 + -0.6
1,904,446 - EX28DRAFT_1895 0.14 -0.6
1,904,446 - EX28DRAFT_1895 0.14 +0.6
1,904,608 - EX28DRAFT_1895 0.36 -1.4
1,904,608 - EX28DRAFT_1895 0.36 -0.5

Or see this region's nucleotide sequence