Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1857

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1856 and EX28DRAFT_1857 are separated by 26 nucleotidesEX28DRAFT_1857 and EX28DRAFT_1858 are separated by 11 nucleotidesEX28DRAFT_1858 and EX28DRAFT_1859 are separated by 3 nucleotidesEX28DRAFT_1859 and EX28DRAFT_1860 are separated by 157 nucleotides EX28DRAFT_1856: EX28DRAFT_1856 - flagellar hook-basal body protein, at 1,872,400 to 1,873,650 _1856 EX28DRAFT_1857: EX28DRAFT_1857 - Flagellar hook capping protein, at 1,873,677 to 1,874,387 _1857 EX28DRAFT_1858: EX28DRAFT_1858 - flagellar basal-body rod protein FlgC, at 1,874,399 to 1,874,803 _1858 EX28DRAFT_1859: EX28DRAFT_1859 - flagellar basal-body rod protein FlgB, at 1,874,807 to 1,875,223 _1859 EX28DRAFT_1860: EX28DRAFT_1860 - flagella basal body P-ring formation protein FlgA, at 1,875,381 to 1,876,040 _1860 Position (kb) 1873 1874 1875Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1872.701 kb on + strand, within EX28DRAFT_1856at 1872.702 kb on - strand, within EX28DRAFT_1856at 1872.702 kb on - strand, within EX28DRAFT_1856at 1872.702 kb on - strand, within EX28DRAFT_1856at 1872.880 kb on - strand, within EX28DRAFT_1856at 1872.914 kb on - strand, within EX28DRAFT_1856at 1872.914 kb on - strand, within EX28DRAFT_1856at 1872.929 kb on + strand, within EX28DRAFT_1856at 1872.929 kb on + strand, within EX28DRAFT_1856at 1872.930 kb on - strand, within EX28DRAFT_1856at 1872.930 kb on - strand, within EX28DRAFT_1856at 1872.930 kb on - strand, within EX28DRAFT_1856at 1872.933 kb on + strand, within EX28DRAFT_1856at 1872.934 kb on - strand, within EX28DRAFT_1856at 1872.934 kb on - strand, within EX28DRAFT_1856at 1872.935 kb on + strand, within EX28DRAFT_1856at 1872.935 kb on + strand, within EX28DRAFT_1856at 1872.935 kb on + strand, within EX28DRAFT_1856at 1872.936 kb on - strand, within EX28DRAFT_1856at 1872.994 kb on - strand, within EX28DRAFT_1856at 1872.994 kb on - strand, within EX28DRAFT_1856at 1873.055 kb on + strand, within EX28DRAFT_1856at 1873.056 kb on - strand, within EX28DRAFT_1856at 1873.056 kb on - strand, within EX28DRAFT_1856at 1873.056 kb on - strand, within EX28DRAFT_1856at 1873.058 kb on + strand, within EX28DRAFT_1856at 1873.059 kb on - strand, within EX28DRAFT_1856at 1873.064 kb on + strand, within EX28DRAFT_1856at 1873.064 kb on + strand, within EX28DRAFT_1856at 1873.064 kb on + strand, within EX28DRAFT_1856at 1873.064 kb on + strand, within EX28DRAFT_1856at 1873.064 kb on + strand, within EX28DRAFT_1856at 1873.064 kb on + strand, within EX28DRAFT_1856at 1873.064 kb on + strand, within EX28DRAFT_1856at 1873.064 kb on + strand, within EX28DRAFT_1856at 1873.065 kb on - strand, within EX28DRAFT_1856at 1873.065 kb on - strand, within EX28DRAFT_1856at 1873.065 kb on - strand, within EX28DRAFT_1856at 1873.065 kb on - strand, within EX28DRAFT_1856at 1873.065 kb on - strand, within EX28DRAFT_1856at 1873.065 kb on - strand, within EX28DRAFT_1856at 1873.065 kb on - strand, within EX28DRAFT_1856at 1873.065 kb on - strand, within EX28DRAFT_1856at 1873.065 kb on - strand, within EX28DRAFT_1856at 1873.065 kb on - strand, within EX28DRAFT_1856at 1873.065 kb on - strand, within EX28DRAFT_1856at 1873.065 kb on - strand, within EX28DRAFT_1856at 1873.072 kb on - strand, within EX28DRAFT_1856at 1873.119 kb on + strand, within EX28DRAFT_1856at 1873.121 kb on + strand, within EX28DRAFT_1856at 1873.121 kb on + strand, within EX28DRAFT_1856at 1873.121 kb on + strand, within EX28DRAFT_1856at 1873.121 kb on + strand, within EX28DRAFT_1856at 1873.121 kb on + strand, within EX28DRAFT_1856at 1873.122 kb on - strand, within EX28DRAFT_1856at 1873.122 kb on - strand, within EX28DRAFT_1856at 1873.122 kb on - strand, within EX28DRAFT_1856at 1873.122 kb on - strand, within EX28DRAFT_1856at 1873.239 kb on + strand, within EX28DRAFT_1856at 1873.240 kb on - strand, within EX28DRAFT_1856at 1873.288 kb on + strand, within EX28DRAFT_1856at 1873.333 kb on - strand, within EX28DRAFT_1856at 1873.370 kb on + strand, within EX28DRAFT_1856at 1873.371 kb on - strand, within EX28DRAFT_1856at 1873.562 kb on + strandat 1873.562 kb on + strandat 1873.562 kb on + strandat 1873.562 kb on + strandat 1873.563 kb on - strandat 1873.563 kb on - strandat 1873.563 kb on - strandat 1873.563 kb on - strandat 1873.655 kb on + strandat 1873.655 kb on + strandat 1873.656 kb on - strandat 1873.664 kb on + strandat 1873.665 kb on - strandat 1873.665 kb on - strandat 1873.665 kb on - strandat 1873.679 kb on - strandat 1873.679 kb on - strandat 1873.679 kb on - strandat 1873.679 kb on - strandat 1873.682 kb on + strandat 1873.837 kb on + strand, within EX28DRAFT_1857at 1873.856 kb on + strand, within EX28DRAFT_1857at 1873.857 kb on - strand, within EX28DRAFT_1857at 1873.887 kb on - strand, within EX28DRAFT_1857at 1873.925 kb on + strand, within EX28DRAFT_1857at 1873.926 kb on - strand, within EX28DRAFT_1857at 1874.077 kb on - strand, within EX28DRAFT_1857at 1874.156 kb on + strand, within EX28DRAFT_1857at 1874.246 kb on + strand, within EX28DRAFT_1857at 1874.247 kb on - strand, within EX28DRAFT_1857at 1874.315 kb on + strand, within EX28DRAFT_1857at 1874.315 kb on + strand, within EX28DRAFT_1857at 1874.316 kb on - strand, within EX28DRAFT_1857at 1874.316 kb on - strand, within EX28DRAFT_1857at 1874.343 kb on - strandat 1874.343 kb on - strandat 1874.357 kb on + strandat 1874.401 kb on - strandat 1874.444 kb on - strand, within EX28DRAFT_1858at 1874.444 kb on - strand, within EX28DRAFT_1858at 1874.447 kb on - strand, within EX28DRAFT_1858at 1874.447 kb on - strand, within EX28DRAFT_1858at 1874.447 kb on - strand, within EX28DRAFT_1858at 1874.469 kb on + strand, within EX28DRAFT_1858at 1874.470 kb on - strand, within EX28DRAFT_1858at 1874.473 kb on + strand, within EX28DRAFT_1858at 1874.571 kb on + strand, within EX28DRAFT_1858at 1874.805 kb on + strandat 1874.805 kb on + strandat 1874.805 kb on + strandat 1874.969 kb on + strand, within EX28DRAFT_1859at 1875.008 kb on - strand, within EX28DRAFT_1859at 1875.170 kb on + strand, within EX28DRAFT_1859at 1875.261 kb on + strandat 1875.312 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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1,872,701 + EX28DRAFT_1856 0.24 +0.7
1,872,702 - EX28DRAFT_1856 0.24 +1.4
1,872,702 - EX28DRAFT_1856 0.24 +2.3
1,872,702 - EX28DRAFT_1856 0.24 +1.4
1,872,880 - EX28DRAFT_1856 0.38 +0.6
1,872,914 - EX28DRAFT_1856 0.41 +1.6
1,872,914 - EX28DRAFT_1856 0.41 +1.0
1,872,929 + EX28DRAFT_1856 0.42 -1.0
1,872,929 + EX28DRAFT_1856 0.42 +1.7
1,872,930 - EX28DRAFT_1856 0.42 +0.9
1,872,930 - EX28DRAFT_1856 0.42 +1.1
1,872,930 - EX28DRAFT_1856 0.42 +0.7
1,872,933 + EX28DRAFT_1856 0.43 -0.8
1,872,934 - EX28DRAFT_1856 0.43 +0.7
1,872,934 - EX28DRAFT_1856 0.43 -1.3
1,872,935 + EX28DRAFT_1856 0.43 +0.1
1,872,935 + EX28DRAFT_1856 0.43 +1.5
1,872,935 + EX28DRAFT_1856 0.43 +0.3
1,872,936 - EX28DRAFT_1856 0.43 +0.9
1,872,994 - EX28DRAFT_1856 0.47 +0.9
1,872,994 - EX28DRAFT_1856 0.47 +1.4
1,873,055 + EX28DRAFT_1856 0.52 +0.3
1,873,056 - EX28DRAFT_1856 0.52 -0.1
1,873,056 - EX28DRAFT_1856 0.52 +2.0
1,873,056 - EX28DRAFT_1856 0.52 +0.2
1,873,058 + EX28DRAFT_1856 0.53 +0.5
1,873,059 - EX28DRAFT_1856 0.53 +1.3
1,873,064 + EX28DRAFT_1856 0.53 +1.0
1,873,064 + EX28DRAFT_1856 0.53 +0.6
1,873,064 + EX28DRAFT_1856 0.53 +0.3
1,873,064 + EX28DRAFT_1856 0.53 -0.1
1,873,064 + EX28DRAFT_1856 0.53 +0.2
1,873,064 + EX28DRAFT_1856 0.53 +0.5
1,873,064 + EX28DRAFT_1856 0.53 -0.5
1,873,064 + EX28DRAFT_1856 0.53 -0.2
1,873,065 - EX28DRAFT_1856 0.53 +2.0
1,873,065 - EX28DRAFT_1856 0.53 +0.5
1,873,065 - EX28DRAFT_1856 0.53 +0.7
1,873,065 - EX28DRAFT_1856 0.53 +0.1
1,873,065 - EX28DRAFT_1856 0.53 -0.8
1,873,065 - EX28DRAFT_1856 0.53 +0.9
1,873,065 - EX28DRAFT_1856 0.53 +0.5
1,873,065 - EX28DRAFT_1856 0.53 +0.1
1,873,065 - EX28DRAFT_1856 0.53 +1.7
1,873,065 - EX28DRAFT_1856 0.53 +0.1
1,873,065 - EX28DRAFT_1856 0.53 +1.0
1,873,065 - EX28DRAFT_1856 0.53 +0.9
1,873,072 - EX28DRAFT_1856 0.54 +2.2
1,873,119 + EX28DRAFT_1856 0.57 +1.3
1,873,121 + EX28DRAFT_1856 0.58 +1.2
1,873,121 + EX28DRAFT_1856 0.58 +1.9
1,873,121 + EX28DRAFT_1856 0.58 +1.1
1,873,121 + EX28DRAFT_1856 0.58 +3.0
1,873,121 + EX28DRAFT_1856 0.58 +0.9
1,873,122 - EX28DRAFT_1856 0.58 -3.1
1,873,122 - EX28DRAFT_1856 0.58 +1.1
1,873,122 - EX28DRAFT_1856 0.58 +1.0
1,873,122 - EX28DRAFT_1856 0.58 +1.3
1,873,239 + EX28DRAFT_1856 0.67 +1.2
1,873,240 - EX28DRAFT_1856 0.67 +0.0
1,873,288 + EX28DRAFT_1856 0.71 -1.5
1,873,333 - EX28DRAFT_1856 0.75 +0.9
1,873,370 + EX28DRAFT_1856 0.78 +1.3
1,873,371 - EX28DRAFT_1856 0.78 -0.2
1,873,562 + +1.2
1,873,562 + +0.9
1,873,562 + +0.1
1,873,562 + +0.7
1,873,563 - -3.4
1,873,563 - -2.8
1,873,563 - +0.9
1,873,563 - +0.7
1,873,655 + +0.0
1,873,655 + -0.0
1,873,656 - +0.9
1,873,664 + -0.2
1,873,665 - +0.4
1,873,665 - +0.8
1,873,665 - +1.0
1,873,679 - +0.1
1,873,679 - -0.9
1,873,679 - +0.9
1,873,679 - -0.9
1,873,682 + -0.2
1,873,837 + EX28DRAFT_1857 0.23 +0.8
1,873,856 + EX28DRAFT_1857 0.25 +0.4
1,873,857 - EX28DRAFT_1857 0.25 +0.0
1,873,887 - EX28DRAFT_1857 0.30 +0.9
1,873,925 + EX28DRAFT_1857 0.35 +1.5
1,873,926 - EX28DRAFT_1857 0.35 +1.1
1,874,077 - EX28DRAFT_1857 0.56 +0.5
1,874,156 + EX28DRAFT_1857 0.67 -0.2
1,874,246 + EX28DRAFT_1857 0.80 -0.5
1,874,247 - EX28DRAFT_1857 0.80 +1.1
1,874,315 + EX28DRAFT_1857 0.90 +1.2
1,874,315 + EX28DRAFT_1857 0.90 +0.5
1,874,316 - EX28DRAFT_1857 0.90 +1.6
1,874,316 - EX28DRAFT_1857 0.90 +1.7
1,874,343 - +0.4
1,874,343 - +0.9
1,874,357 + -0.2
1,874,401 - +0.9
1,874,444 - EX28DRAFT_1858 0.11 +0.8
1,874,444 - EX28DRAFT_1858 0.11 +0.3
1,874,447 - EX28DRAFT_1858 0.12 +1.4
1,874,447 - EX28DRAFT_1858 0.12 +0.7
1,874,447 - EX28DRAFT_1858 0.12 +0.0
1,874,469 + EX28DRAFT_1858 0.17 +1.3
1,874,470 - EX28DRAFT_1858 0.18 +1.4
1,874,473 + EX28DRAFT_1858 0.18 +0.5
1,874,571 + EX28DRAFT_1858 0.42 +0.2
1,874,805 + +0.8
1,874,805 + +0.1
1,874,805 + +1.0
1,874,969 + EX28DRAFT_1859 0.39 +3.4
1,875,008 - EX28DRAFT_1859 0.48 +0.4
1,875,170 + EX28DRAFT_1859 0.87 +0.4
1,875,261 + -0.7
1,875,312 + +0.6

Or see this region's nucleotide sequence