Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1524 and EX28DRAFT_1525 are separated by 41 nucleotides EX28DRAFT_1525 and EX28DRAFT_1526 are separated by 97 nucleotides
EX28DRAFT_1524: EX28DRAFT_1524 - Dioxygenases related to 2-nitropropane dioxygenase, at 1,539,993 to 1,540,973
_1524
EX28DRAFT_1525: EX28DRAFT_1525 - Nucleoside-diphosphate-sugar epimerases, at 1,541,015 to 1,542,070
_1525
EX28DRAFT_1526: EX28DRAFT_1526 - Transcriptional regulator, at 1,542,168 to 1,543,055
_1526
Position (kb) 1541
1542
1543 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1540.040 kb on + strand at 1540.278 kb on - strand, within EX28DRAFT_1524 at 1540.320 kb on + strand, within EX28DRAFT_1524 at 1540.321 kb on - strand, within EX28DRAFT_1524 at 1540.746 kb on + strand, within EX28DRAFT_1524 at 1540.747 kb on - strand, within EX28DRAFT_1524 at 1540.890 kb on + strand at 1540.890 kb on + strand at 1540.891 kb on - strand at 1540.893 kb on - strand at 1540.971 kb on + strand at 1540.971 kb on + strand at 1541.089 kb on + strand at 1541.143 kb on + strand, within EX28DRAFT_1525 at 1541.505 kb on + strand, within EX28DRAFT_1525 at 1541.506 kb on - strand, within EX28DRAFT_1525 at 1541.506 kb on - strand, within EX28DRAFT_1525 at 1541.506 kb on - strand, within EX28DRAFT_1525 at 1541.506 kb on - strand, within EX28DRAFT_1525 at 1541.686 kb on + strand, within EX28DRAFT_1525 at 1541.709 kb on + strand, within EX28DRAFT_1525 at 1541.709 kb on + strand, within EX28DRAFT_1525 at 1541.709 kb on + strand, within EX28DRAFT_1525 at 1541.710 kb on - strand, within EX28DRAFT_1525 at 1541.736 kb on - strand, within EX28DRAFT_1525 at 1541.779 kb on + strand, within EX28DRAFT_1525 at 1541.907 kb on - strand, within EX28DRAFT_1525 at 1541.946 kb on - strand, within EX28DRAFT_1525 at 1542.064 kb on + strand at 1542.065 kb on - strand at 1542.065 kb on - strand at 1542.108 kb on - strand at 1542.176 kb on + strand at 1542.176 kb on + strand at 1542.194 kb on + strand at 1542.435 kb on - strand, within EX28DRAFT_1526 at 1542.724 kb on + strand, within EX28DRAFT_1526 at 1542.725 kb on - strand, within EX28DRAFT_1526 at 1542.957 kb on + strand, within EX28DRAFT_1526 at 1543.015 kb on + strand at 1543.016 kb on - strand at 1543.039 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 1,540,040 + -0.1 1,540,278 - EX28DRAFT_1524 0.29 -0.6 1,540,320 + EX28DRAFT_1524 0.33 +0.8 1,540,321 - EX28DRAFT_1524 0.33 +0.0 1,540,746 + EX28DRAFT_1524 0.77 -0.2 1,540,747 - EX28DRAFT_1524 0.77 -0.3 1,540,890 + -0.8 1,540,890 + +0.6 1,540,891 - -0.2 1,540,893 - +0.0 1,540,971 + -0.8 1,540,971 + -0.3 1,541,089 + +0.4 1,541,143 + EX28DRAFT_1525 0.12 -0.1 1,541,505 + EX28DRAFT_1525 0.46 +0.6 1,541,506 - EX28DRAFT_1525 0.46 +0.2 1,541,506 - EX28DRAFT_1525 0.46 -0.0 1,541,506 - EX28DRAFT_1525 0.46 +0.8 1,541,506 - EX28DRAFT_1525 0.46 +0.5 1,541,686 + EX28DRAFT_1525 0.64 -0.5 1,541,709 + EX28DRAFT_1525 0.66 +0.6 1,541,709 + EX28DRAFT_1525 0.66 +0.7 1,541,709 + EX28DRAFT_1525 0.66 +0.7 1,541,710 - EX28DRAFT_1525 0.66 -1.2 1,541,736 - EX28DRAFT_1525 0.68 +1.3 1,541,779 + EX28DRAFT_1525 0.72 +0.1 1,541,907 - EX28DRAFT_1525 0.84 -0.4 1,541,946 - EX28DRAFT_1525 0.88 +0.1 1,542,064 + -0.3 1,542,065 - +0.6 1,542,065 - +0.6 1,542,108 - +2.8 1,542,176 + +0.3 1,542,176 + +0.7 1,542,194 + +1.2 1,542,435 - EX28DRAFT_1526 0.30 +0.4 1,542,724 + EX28DRAFT_1526 0.63 +0.3 1,542,725 - EX28DRAFT_1526 0.63 -1.0 1,542,957 + EX28DRAFT_1526 0.89 -0.1 1,543,015 + -0.2 1,543,016 - -1.6 1,543,039 + -1.8
Or see this region's nucleotide sequence