Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1425

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1424 and EX28DRAFT_1425 are separated by 9 nucleotidesEX28DRAFT_1425 and EX28DRAFT_1426 are separated by 121 nucleotidesEX28DRAFT_1426 and EX28DRAFT_1427 overlap by 4 nucleotides EX28DRAFT_1424: EX28DRAFT_1424 - diguanylate cyclase (GGDEF) domain, at 1,435,285 to 1,436,391 _1424 EX28DRAFT_1425: EX28DRAFT_1425 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 1,436,401 to 1,437,387 _1425 EX28DRAFT_1426: EX28DRAFT_1426 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 1,437,509 to 1,438,273 _1426 EX28DRAFT_1427: EX28DRAFT_1427 - Acyl carrier protein phosphodiesterase, at 1,438,270 to 1,438,884 _1427 Position (kb) 1436 1437 1438Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1435.428 kb on - strand, within EX28DRAFT_1424at 1435.435 kb on - strand, within EX28DRAFT_1424at 1435.614 kb on + strand, within EX28DRAFT_1424at 1435.676 kb on + strand, within EX28DRAFT_1424at 1435.791 kb on + strand, within EX28DRAFT_1424at 1435.807 kb on - strand, within EX28DRAFT_1424at 1435.841 kb on + strand, within EX28DRAFT_1424at 1435.870 kb on - strand, within EX28DRAFT_1424at 1436.007 kb on + strand, within EX28DRAFT_1424at 1436.036 kb on - strand, within EX28DRAFT_1424at 1436.381 kb on + strandat 1436.677 kb on - strand, within EX28DRAFT_1425at 1436.847 kb on + strand, within EX28DRAFT_1425at 1436.848 kb on - strand, within EX28DRAFT_1425at 1436.961 kb on + strand, within EX28DRAFT_1425at 1436.962 kb on - strand, within EX28DRAFT_1425at 1436.966 kb on + strand, within EX28DRAFT_1425at 1437.068 kb on + strand, within EX28DRAFT_1425at 1437.068 kb on + strand, within EX28DRAFT_1425at 1437.069 kb on - strand, within EX28DRAFT_1425at 1437.272 kb on - strand, within EX28DRAFT_1425at 1437.272 kb on - strand, within EX28DRAFT_1425at 1437.443 kb on + strandat 1437.467 kb on + strandat 1437.498 kb on - strandat 1437.508 kb on + strandat 1437.587 kb on - strand, within EX28DRAFT_1426at 1437.959 kb on + strand, within EX28DRAFT_1426at 1437.992 kb on - strand, within EX28DRAFT_1426at 1438.092 kb on - strand, within EX28DRAFT_1426at 1438.175 kb on - strand, within EX28DRAFT_1426at 1438.177 kb on + strand, within EX28DRAFT_1426at 1438.178 kb on - strand, within EX28DRAFT_1426at 1438.189 kb on + strand, within EX28DRAFT_1426at 1438.189 kb on + strand, within EX28DRAFT_1426at 1438.190 kb on - strand, within EX28DRAFT_1426at 1438.190 kb on - strand, within EX28DRAFT_1426at 1438.286 kb on + strandat 1438.287 kb on - strandat 1438.287 kb on - strandat 1438.287 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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1,435,428 - EX28DRAFT_1424 0.13 -1.1
1,435,435 - EX28DRAFT_1424 0.14 -0.8
1,435,614 + EX28DRAFT_1424 0.30 -1.8
1,435,676 + EX28DRAFT_1424 0.35 +0.5
1,435,791 + EX28DRAFT_1424 0.46 -0.4
1,435,807 - EX28DRAFT_1424 0.47 +0.5
1,435,841 + EX28DRAFT_1424 0.50 +0.5
1,435,870 - EX28DRAFT_1424 0.53 -2.3
1,436,007 + EX28DRAFT_1424 0.65 -0.1
1,436,036 - EX28DRAFT_1424 0.68 -0.3
1,436,381 + -0.1
1,436,677 - EX28DRAFT_1425 0.28 +0.6
1,436,847 + EX28DRAFT_1425 0.45 +0.2
1,436,848 - EX28DRAFT_1425 0.45 -0.6
1,436,961 + EX28DRAFT_1425 0.57 -1.6
1,436,962 - EX28DRAFT_1425 0.57 +0.6
1,436,966 + EX28DRAFT_1425 0.57 -0.4
1,437,068 + EX28DRAFT_1425 0.68 +1.5
1,437,068 + EX28DRAFT_1425 0.68 +0.5
1,437,069 - EX28DRAFT_1425 0.68 +2.9
1,437,272 - EX28DRAFT_1425 0.88 -0.3
1,437,272 - EX28DRAFT_1425 0.88 +0.1
1,437,443 + +0.2
1,437,467 + -0.4
1,437,498 - +0.5
1,437,508 + -0.1
1,437,587 - EX28DRAFT_1426 0.10 +0.5
1,437,959 + EX28DRAFT_1426 0.59 +0.3
1,437,992 - EX28DRAFT_1426 0.63 +0.6
1,438,092 - EX28DRAFT_1426 0.76 +0.8
1,438,175 - EX28DRAFT_1426 0.87 -0.7
1,438,177 + EX28DRAFT_1426 0.87 -1.1
1,438,178 - EX28DRAFT_1426 0.87 +0.7
1,438,189 + EX28DRAFT_1426 0.89 -0.7
1,438,189 + EX28DRAFT_1426 0.89 -0.3
1,438,190 - EX28DRAFT_1426 0.89 +0.3
1,438,190 - EX28DRAFT_1426 0.89 +0.3
1,438,286 + +1.0
1,438,287 - -0.8
1,438,287 - -0.2
1,438,287 - -1.1

Or see this region's nucleotide sequence