Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1406

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1404 and EX28DRAFT_1405 are separated by 165 nucleotidesEX28DRAFT_1405 and EX28DRAFT_1406 are separated by 1 nucleotidesEX28DRAFT_1406 and EX28DRAFT_1407 are separated by 172 nucleotides EX28DRAFT_1404: EX28DRAFT_1404 - Predicted kinase, at 1,413,684 to 1,414,190 _1404 EX28DRAFT_1405: EX28DRAFT_1405 - Glutathione peroxidase, at 1,414,356 to 1,414,838 _1405 EX28DRAFT_1406: EX28DRAFT_1406 - Uncharacterized protein conserved in bacteria, at 1,414,840 to 1,415,328 _1406 EX28DRAFT_1407: EX28DRAFT_1407 - Beta-lactamase class C and other penicillin binding proteins, at 1,415,501 to 1,416,772 _1407 Position (kb) 1414 1415 1416Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1413.856 kb on + strand, within EX28DRAFT_1404at 1413.856 kb on + strand, within EX28DRAFT_1404at 1413.865 kb on - strand, within EX28DRAFT_1404at 1413.874 kb on - strand, within EX28DRAFT_1404at 1413.919 kb on + strand, within EX28DRAFT_1404at 1413.996 kb on - strand, within EX28DRAFT_1404at 1413.998 kb on + strand, within EX28DRAFT_1404at 1414.030 kb on - strand, within EX28DRAFT_1404at 1414.051 kb on + strand, within EX28DRAFT_1404at 1414.051 kb on + strand, within EX28DRAFT_1404at 1414.052 kb on - strand, within EX28DRAFT_1404at 1414.056 kb on - strand, within EX28DRAFT_1404at 1414.246 kb on + strandat 1414.254 kb on + strandat 1414.254 kb on + strandat 1414.255 kb on - strandat 1414.264 kb on + strandat 1414.264 kb on + strandat 1414.265 kb on - strandat 1414.265 kb on - strandat 1414.265 kb on - strandat 1414.274 kb on + strandat 1414.275 kb on - strandat 1414.336 kb on - strandat 1414.336 kb on - strandat 1414.461 kb on - strand, within EX28DRAFT_1405at 1414.591 kb on + strand, within EX28DRAFT_1405at 1414.669 kb on - strand, within EX28DRAFT_1405at 1414.693 kb on + strand, within EX28DRAFT_1405at 1414.693 kb on + strand, within EX28DRAFT_1405at 1414.693 kb on + strand, within EX28DRAFT_1405at 1414.693 kb on + strand, within EX28DRAFT_1405at 1414.694 kb on - strand, within EX28DRAFT_1405at 1414.694 kb on - strand, within EX28DRAFT_1405at 1414.715 kb on - strand, within EX28DRAFT_1405at 1414.715 kb on - strand, within EX28DRAFT_1405at 1414.791 kb on - strandat 1414.841 kb on + strandat 1414.934 kb on + strand, within EX28DRAFT_1406at 1414.934 kb on + strand, within EX28DRAFT_1406at 1414.934 kb on + strand, within EX28DRAFT_1406at 1414.934 kb on + strand, within EX28DRAFT_1406at 1414.935 kb on - strand, within EX28DRAFT_1406at 1414.935 kb on - strand, within EX28DRAFT_1406at 1414.938 kb on + strand, within EX28DRAFT_1406at 1414.966 kb on - strand, within EX28DRAFT_1406at 1415.059 kb on - strand, within EX28DRAFT_1406at 1415.063 kb on + strand, within EX28DRAFT_1406at 1415.063 kb on + strand, within EX28DRAFT_1406at 1415.124 kb on + strand, within EX28DRAFT_1406at 1415.125 kb on - strand, within EX28DRAFT_1406at 1415.129 kb on - strand, within EX28DRAFT_1406at 1415.138 kb on + strand, within EX28DRAFT_1406at 1415.139 kb on - strand, within EX28DRAFT_1406at 1415.160 kb on + strand, within EX28DRAFT_1406at 1415.160 kb on + strand, within EX28DRAFT_1406at 1415.179 kb on - strand, within EX28DRAFT_1406at 1415.190 kb on - strand, within EX28DRAFT_1406at 1415.190 kb on - strand, within EX28DRAFT_1406at 1415.190 kb on - strand, within EX28DRAFT_1406at 1415.193 kb on + strand, within EX28DRAFT_1406at 1415.194 kb on - strand, within EX28DRAFT_1406at 1415.202 kb on + strand, within EX28DRAFT_1406at 1415.240 kb on - strand, within EX28DRAFT_1406at 1415.258 kb on - strand, within EX28DRAFT_1406at 1415.282 kb on - strandat 1415.282 kb on - strandat 1415.413 kb on + strandat 1415.449 kb on + strandat 1415.459 kb on - strandat 1415.459 kb on - strandat 1415.501 kb on - strandat 1415.511 kb on + strandat 1415.657 kb on + strand, within EX28DRAFT_1407at 1415.657 kb on + strand, within EX28DRAFT_1407at 1415.657 kb on + strand, within EX28DRAFT_1407at 1415.658 kb on - strand, within EX28DRAFT_1407at 1415.658 kb on - strand, within EX28DRAFT_1407at 1415.658 kb on - strand, within EX28DRAFT_1407at 1415.658 kb on - strand, within EX28DRAFT_1407at 1415.658 kb on - strand, within EX28DRAFT_1407at 1415.658 kb on - strand, within EX28DRAFT_1407at 1415.660 kb on - strand, within EX28DRAFT_1407at 1415.660 kb on - strand, within EX28DRAFT_1407at 1415.971 kb on + strand, within EX28DRAFT_1407at 1415.972 kb on - strand, within EX28DRAFT_1407at 1416.005 kb on + strand, within EX28DRAFT_1407at 1416.006 kb on - strand, within EX28DRAFT_1407at 1416.009 kb on + strand, within EX28DRAFT_1407at 1416.009 kb on + strand, within EX28DRAFT_1407at 1416.009 kb on + strand, within EX28DRAFT_1407at 1416.010 kb on - strand, within EX28DRAFT_1407at 1416.104 kb on + strand, within EX28DRAFT_1407at 1416.105 kb on - strand, within EX28DRAFT_1407at 1416.174 kb on + strand, within EX28DRAFT_1407at 1416.188 kb on - strand, within EX28DRAFT_1407at 1416.238 kb on - strand, within EX28DRAFT_1407

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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1,413,856 + EX28DRAFT_1404 0.34 +0.4
1,413,856 + EX28DRAFT_1404 0.34 -2.3
1,413,865 - EX28DRAFT_1404 0.36 -1.4
1,413,874 - EX28DRAFT_1404 0.37 +0.6
1,413,919 + EX28DRAFT_1404 0.46 +0.5
1,413,996 - EX28DRAFT_1404 0.62 -1.1
1,413,998 + EX28DRAFT_1404 0.62 -1.4
1,414,030 - EX28DRAFT_1404 0.68 +1.0
1,414,051 + EX28DRAFT_1404 0.72 -0.1
1,414,051 + EX28DRAFT_1404 0.72 +2.6
1,414,052 - EX28DRAFT_1404 0.73 +3.2
1,414,056 - EX28DRAFT_1404 0.73 -0.0
1,414,246 + -1.0
1,414,254 + +0.3
1,414,254 + -2.2
1,414,255 - +0.3
1,414,264 + +0.1
1,414,264 + -1.4
1,414,265 - +0.3
1,414,265 - -0.8
1,414,265 - +1.3
1,414,274 + +1.3
1,414,275 - +0.1
1,414,336 - -0.8
1,414,336 - -0.5
1,414,461 - EX28DRAFT_1405 0.22 -1.3
1,414,591 + EX28DRAFT_1405 0.49 -0.9
1,414,669 - EX28DRAFT_1405 0.65 -0.2
1,414,693 + EX28DRAFT_1405 0.70 -1.2
1,414,693 + EX28DRAFT_1405 0.70 +4.7
1,414,693 + EX28DRAFT_1405 0.70 -0.5
1,414,693 + EX28DRAFT_1405 0.70 -0.0
1,414,694 - EX28DRAFT_1405 0.70 +0.5
1,414,694 - EX28DRAFT_1405 0.70 -0.4
1,414,715 - EX28DRAFT_1405 0.74 -0.5
1,414,715 - EX28DRAFT_1405 0.74 +0.1
1,414,791 - +1.0
1,414,841 + -1.3
1,414,934 + EX28DRAFT_1406 0.19 -1.4
1,414,934 + EX28DRAFT_1406 0.19 -0.5
1,414,934 + EX28DRAFT_1406 0.19 +0.9
1,414,934 + EX28DRAFT_1406 0.19 -0.3
1,414,935 - EX28DRAFT_1406 0.19 -1.3
1,414,935 - EX28DRAFT_1406 0.19 +0.2
1,414,938 + EX28DRAFT_1406 0.20 -0.9
1,414,966 - EX28DRAFT_1406 0.26 +0.2
1,415,059 - EX28DRAFT_1406 0.45 +0.2
1,415,063 + EX28DRAFT_1406 0.46 -0.9
1,415,063 + EX28DRAFT_1406 0.46 -1.5
1,415,124 + EX28DRAFT_1406 0.58 -0.4
1,415,125 - EX28DRAFT_1406 0.58 +0.6
1,415,129 - EX28DRAFT_1406 0.59 +1.1
1,415,138 + EX28DRAFT_1406 0.61 +0.5
1,415,139 - EX28DRAFT_1406 0.61 -2.8
1,415,160 + EX28DRAFT_1406 0.65 -0.1
1,415,160 + EX28DRAFT_1406 0.65 -1.0
1,415,179 - EX28DRAFT_1406 0.69 -0.3
1,415,190 - EX28DRAFT_1406 0.72 +0.7
1,415,190 - EX28DRAFT_1406 0.72 -0.9
1,415,190 - EX28DRAFT_1406 0.72 +0.2
1,415,193 + EX28DRAFT_1406 0.72 -0.4
1,415,194 - EX28DRAFT_1406 0.72 -0.1
1,415,202 + EX28DRAFT_1406 0.74 -0.5
1,415,240 - EX28DRAFT_1406 0.82 +1.1
1,415,258 - EX28DRAFT_1406 0.85 -1.2
1,415,282 - -0.4
1,415,282 - +0.1
1,415,413 + -0.3
1,415,449 + -1.0
1,415,459 - -0.9
1,415,459 - +0.1
1,415,501 - -0.8
1,415,511 + -1.1
1,415,657 + EX28DRAFT_1407 0.12 -0.8
1,415,657 + EX28DRAFT_1407 0.12 +0.4
1,415,657 + EX28DRAFT_1407 0.12 +0.3
1,415,658 - EX28DRAFT_1407 0.12 -1.4
1,415,658 - EX28DRAFT_1407 0.12 -0.4
1,415,658 - EX28DRAFT_1407 0.12 -0.6
1,415,658 - EX28DRAFT_1407 0.12 +0.8
1,415,658 - EX28DRAFT_1407 0.12 -0.5
1,415,658 - EX28DRAFT_1407 0.12 -0.0
1,415,660 - EX28DRAFT_1407 0.12 +0.6
1,415,660 - EX28DRAFT_1407 0.12 +0.3
1,415,971 + EX28DRAFT_1407 0.37 -3.7
1,415,972 - EX28DRAFT_1407 0.37 -0.4
1,416,005 + EX28DRAFT_1407 0.40 -1.0
1,416,006 - EX28DRAFT_1407 0.40 -0.3
1,416,009 + EX28DRAFT_1407 0.40 +3.6
1,416,009 + EX28DRAFT_1407 0.40 +1.4
1,416,009 + EX28DRAFT_1407 0.40 +0.8
1,416,010 - EX28DRAFT_1407 0.40 -0.2
1,416,104 + EX28DRAFT_1407 0.47 -0.7
1,416,105 - EX28DRAFT_1407 0.47 -0.4
1,416,174 + EX28DRAFT_1407 0.53 -0.3
1,416,188 - EX28DRAFT_1407 0.54 -0.9
1,416,238 - EX28DRAFT_1407 0.58 +0.7

Or see this region's nucleotide sequence