Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1277

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1275 and EX28DRAFT_1276 are separated by 57 nucleotidesEX28DRAFT_1276 and EX28DRAFT_1277 are separated by 64 nucleotidesEX28DRAFT_1277 and EX28DRAFT_1278 overlap by 4 nucleotidesEX28DRAFT_1278 and EX28DRAFT_1279 are separated by 62 nucleotidesEX28DRAFT_1279 and EX28DRAFT_1280 are separated by 47 nucleotides EX28DRAFT_1275: EX28DRAFT_1275 - hypothetical protein, at 1,294,558 to 1,295,229 _1275 EX28DRAFT_1276: EX28DRAFT_1276 - Bacterial Ig-like domain (group 2), at 1,295,287 to 1,296,030 _1276 EX28DRAFT_1277: EX28DRAFT_1277 - hypothetical protein, at 1,296,095 to 1,296,478 _1277 EX28DRAFT_1278: EX28DRAFT_1278 - hypothetical protein, at 1,296,475 to 1,296,915 _1278 EX28DRAFT_1279: EX28DRAFT_1279 - hypothetical protein, at 1,296,978 to 1,297,265 _1279 EX28DRAFT_1280: EX28DRAFT_1280 - hypothetical protein, at 1,297,313 to 1,297,663 _1280 Position (kb) 1296 1297Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1295.165 kb on + strandat 1295.165 kb on + strandat 1295.165 kb on + strandat 1295.230 kb on - strandat 1295.611 kb on + strand, within EX28DRAFT_1276at 1295.661 kb on - strand, within EX28DRAFT_1276at 1295.766 kb on - strand, within EX28DRAFT_1276at 1295.874 kb on + strand, within EX28DRAFT_1276at 1295.911 kb on - strand, within EX28DRAFT_1276at 1296.025 kb on - strandat 1296.051 kb on - strandat 1296.051 kb on - strandat 1296.080 kb on - strandat 1296.135 kb on - strand, within EX28DRAFT_1277at 1296.135 kb on - strand, within EX28DRAFT_1277at 1296.228 kb on + strand, within EX28DRAFT_1277at 1296.393 kb on + strand, within EX28DRAFT_1277at 1296.393 kb on + strand, within EX28DRAFT_1277at 1296.394 kb on - strand, within EX28DRAFT_1277at 1296.394 kb on - strand, within EX28DRAFT_1277at 1296.394 kb on - strand, within EX28DRAFT_1277at 1296.513 kb on + strandat 1296.514 kb on - strandat 1296.514 kb on - strandat 1296.573 kb on - strand, within EX28DRAFT_1278at 1296.683 kb on + strand, within EX28DRAFT_1278at 1296.684 kb on - strand, within EX28DRAFT_1278at 1296.684 kb on - strand, within EX28DRAFT_1278at 1296.782 kb on + strand, within EX28DRAFT_1278at 1296.783 kb on - strand, within EX28DRAFT_1278at 1296.783 kb on - strand, within EX28DRAFT_1278at 1296.785 kb on + strand, within EX28DRAFT_1278at 1296.866 kb on + strand, within EX28DRAFT_1278at 1296.866 kb on + strand, within EX28DRAFT_1278at 1297.017 kb on - strand, within EX28DRAFT_1279at 1297.038 kb on + strand, within EX28DRAFT_1279at 1297.038 kb on + strand, within EX28DRAFT_1279at 1297.039 kb on - strand, within EX28DRAFT_1279at 1297.039 kb on - strand, within EX28DRAFT_1279at 1297.039 kb on - strand, within EX28DRAFT_1279at 1297.039 kb on - strand, within EX28DRAFT_1279at 1297.039 kb on - strand, within EX28DRAFT_1279at 1297.065 kb on + strand, within EX28DRAFT_1279at 1297.106 kb on - strand, within EX28DRAFT_1279at 1297.106 kb on - strand, within EX28DRAFT_1279at 1297.106 kb on - strand, within EX28DRAFT_1279at 1297.136 kb on - strand, within EX28DRAFT_1279at 1297.158 kb on - strand, within EX28DRAFT_1279at 1297.169 kb on + strand, within EX28DRAFT_1279at 1297.170 kb on - strand, within EX28DRAFT_1279at 1297.170 kb on - strand, within EX28DRAFT_1279at 1297.170 kb on - strand, within EX28DRAFT_1279at 1297.171 kb on + strand, within EX28DRAFT_1279at 1297.172 kb on - strand, within EX28DRAFT_1279at 1297.172 kb on - strand, within EX28DRAFT_1279at 1297.253 kb on - strandat 1297.270 kb on + strandat 1297.271 kb on - strandat 1297.298 kb on + strandat 1297.361 kb on - strand, within EX28DRAFT_1280at 1297.443 kb on + strand, within EX28DRAFT_1280at 1297.444 kb on - strand, within EX28DRAFT_1280at 1297.444 kb on - strand, within EX28DRAFT_1280

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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1,295,165 + -0.2
1,295,165 + -0.7
1,295,165 + +2.4
1,295,230 - +0.4
1,295,611 + EX28DRAFT_1276 0.44 +2.4
1,295,661 - EX28DRAFT_1276 0.50 -0.5
1,295,766 - EX28DRAFT_1276 0.64 +4.6
1,295,874 + EX28DRAFT_1276 0.79 +0.2
1,295,911 - EX28DRAFT_1276 0.84 -1.2
1,296,025 - +0.5
1,296,051 - +2.6
1,296,051 - +0.5
1,296,080 - -0.1
1,296,135 - EX28DRAFT_1277 0.10 +0.7
1,296,135 - EX28DRAFT_1277 0.10 +0.7
1,296,228 + EX28DRAFT_1277 0.35 -0.5
1,296,393 + EX28DRAFT_1277 0.78 -0.4
1,296,393 + EX28DRAFT_1277 0.78 +0.5
1,296,394 - EX28DRAFT_1277 0.78 +3.2
1,296,394 - EX28DRAFT_1277 0.78 +0.4
1,296,394 - EX28DRAFT_1277 0.78 +1.5
1,296,513 + +0.2
1,296,514 - -0.0
1,296,514 - -0.9
1,296,573 - EX28DRAFT_1278 0.22 -0.3
1,296,683 + EX28DRAFT_1278 0.47 +1.7
1,296,684 - EX28DRAFT_1278 0.47 -0.5
1,296,684 - EX28DRAFT_1278 0.47 -0.4
1,296,782 + EX28DRAFT_1278 0.70 -3.0
1,296,783 - EX28DRAFT_1278 0.70 +0.2
1,296,783 - EX28DRAFT_1278 0.70 +3.1
1,296,785 + EX28DRAFT_1278 0.70 +0.6
1,296,866 + EX28DRAFT_1278 0.89 +0.8
1,296,866 + EX28DRAFT_1278 0.89 +0.1
1,297,017 - EX28DRAFT_1279 0.14 +1.0
1,297,038 + EX28DRAFT_1279 0.21 -0.8
1,297,038 + EX28DRAFT_1279 0.21 +3.7
1,297,039 - EX28DRAFT_1279 0.21 -0.4
1,297,039 - EX28DRAFT_1279 0.21 -0.5
1,297,039 - EX28DRAFT_1279 0.21 -0.6
1,297,039 - EX28DRAFT_1279 0.21 +0.1
1,297,039 - EX28DRAFT_1279 0.21 +0.4
1,297,065 + EX28DRAFT_1279 0.30 -0.1
1,297,106 - EX28DRAFT_1279 0.44 -2.5
1,297,106 - EX28DRAFT_1279 0.44 +0.6
1,297,106 - EX28DRAFT_1279 0.44 -0.0
1,297,136 - EX28DRAFT_1279 0.55 +0.9
1,297,158 - EX28DRAFT_1279 0.62 +0.9
1,297,169 + EX28DRAFT_1279 0.66 -0.9
1,297,170 - EX28DRAFT_1279 0.67 +0.2
1,297,170 - EX28DRAFT_1279 0.67 +1.1
1,297,170 - EX28DRAFT_1279 0.67 +1.4
1,297,171 + EX28DRAFT_1279 0.67 -0.7
1,297,172 - EX28DRAFT_1279 0.67 -1.5
1,297,172 - EX28DRAFT_1279 0.67 -0.2
1,297,253 - +0.1
1,297,270 + -0.7
1,297,271 - -0.4
1,297,298 + -1.1
1,297,361 - EX28DRAFT_1280 0.14 -1.2
1,297,443 + EX28DRAFT_1280 0.37 -1.2
1,297,444 - EX28DRAFT_1280 0.37 +1.1
1,297,444 - EX28DRAFT_1280 0.37 +0.1

Or see this region's nucleotide sequence