Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1087

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1085 and EX28DRAFT_1086 overlap by 8 nucleotidesEX28DRAFT_1086 and EX28DRAFT_1087 are separated by 51 nucleotidesEX28DRAFT_1087 and EX28DRAFT_1088 overlap by 1 nucleotidesEX28DRAFT_1088 and EX28DRAFT_1089 are separated by 102 nucleotides EX28DRAFT_1085: EX28DRAFT_1085 - formate dehydrogenase, beta subunit, Fe-S containing, at 1,098,820 to 1,099,704 _1085 EX28DRAFT_1086: EX28DRAFT_1086 - formate dehydrogenase, gamma subunit, at 1,099,697 to 1,100,353 _1086 EX28DRAFT_1087: EX28DRAFT_1087 - CcdB protein, at 1,100,405 to 1,100,728 _1087 EX28DRAFT_1088: EX28DRAFT_1088 - hypothetical protein, at 1,100,728 to 1,100,916 _1088 EX28DRAFT_1089: EX28DRAFT_1089 - polyphosphate kinase 2, PA0141 family, at 1,101,019 to 1,101,837 _1089 Position (kb) 1100 1101Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1099.459 kb on + strand, within EX28DRAFT_1085at 1099.495 kb on + strand, within EX28DRAFT_1085at 1099.495 kb on + strand, within EX28DRAFT_1085at 1099.495 kb on + strand, within EX28DRAFT_1085at 1099.496 kb on - strand, within EX28DRAFT_1085at 1099.496 kb on - strand, within EX28DRAFT_1085at 1099.496 kb on - strand, within EX28DRAFT_1085at 1099.496 kb on - strand, within EX28DRAFT_1085at 1099.646 kb on - strandat 1099.646 kb on - strandat 1099.646 kb on - strandat 1099.702 kb on + strandat 1099.702 kb on + strandat 1099.702 kb on + strandat 1099.702 kb on + strandat 1099.703 kb on - strandat 1099.906 kb on + strand, within EX28DRAFT_1086at 1099.907 kb on - strand, within EX28DRAFT_1086at 1099.952 kb on - strand, within EX28DRAFT_1086at 1099.999 kb on + strand, within EX28DRAFT_1086at 1099.999 kb on + strand, within EX28DRAFT_1086at 1099.999 kb on + strand, within EX28DRAFT_1086at 1099.999 kb on + strand, within EX28DRAFT_1086at 1100.000 kb on - strand, within EX28DRAFT_1086at 1100.000 kb on - strand, within EX28DRAFT_1086at 1100.021 kb on + strand, within EX28DRAFT_1086at 1100.021 kb on + strand, within EX28DRAFT_1086at 1100.021 kb on + strand, within EX28DRAFT_1086at 1100.108 kb on + strand, within EX28DRAFT_1086at 1100.121 kb on - strand, within EX28DRAFT_1086at 1100.203 kb on + strand, within EX28DRAFT_1086at 1100.203 kb on + strand, within EX28DRAFT_1086at 1100.204 kb on - strand, within EX28DRAFT_1086at 1100.204 kb on - strand, within EX28DRAFT_1086at 1100.204 kb on - strand, within EX28DRAFT_1086at 1100.207 kb on + strand, within EX28DRAFT_1086at 1100.207 kb on + strand, within EX28DRAFT_1086at 1100.207 kb on + strand, within EX28DRAFT_1086at 1100.207 kb on + strand, within EX28DRAFT_1086at 1100.207 kb on + strand, within EX28DRAFT_1086at 1100.207 kb on + strand, within EX28DRAFT_1086at 1100.207 kb on + strand, within EX28DRAFT_1086at 1100.208 kb on - strand, within EX28DRAFT_1086at 1100.208 kb on - strand, within EX28DRAFT_1086at 1100.208 kb on - strand, within EX28DRAFT_1086at 1100.208 kb on - strand, within EX28DRAFT_1086at 1100.208 kb on - strand, within EX28DRAFT_1086at 1100.208 kb on - strand, within EX28DRAFT_1086at 1100.208 kb on - strand, within EX28DRAFT_1086at 1100.208 kb on - strand, within EX28DRAFT_1086at 1100.208 kb on - strand, within EX28DRAFT_1086at 1100.208 kb on - strand, within EX28DRAFT_1086at 1100.208 kb on - strand, within EX28DRAFT_1086at 1100.208 kb on - strand, within EX28DRAFT_1086at 1100.210 kb on - strand, within EX28DRAFT_1086at 1100.352 kb on - strandat 1100.406 kb on + strandat 1100.406 kb on + strandat 1100.410 kb on + strandat 1100.447 kb on - strand, within EX28DRAFT_1087at 1100.471 kb on + strand, within EX28DRAFT_1087at 1100.471 kb on + strand, within EX28DRAFT_1087at 1100.471 kb on + strand, within EX28DRAFT_1087at 1100.472 kb on - strand, within EX28DRAFT_1087at 1100.475 kb on + strand, within EX28DRAFT_1087at 1100.579 kb on - strand, within EX28DRAFT_1087at 1100.592 kb on + strand, within EX28DRAFT_1087at 1100.592 kb on + strand, within EX28DRAFT_1087at 1100.641 kb on - strand, within EX28DRAFT_1087at 1100.875 kb on - strand, within EX28DRAFT_1088at 1100.990 kb on + strandat 1101.006 kb on + strandat 1101.119 kb on + strand, within EX28DRAFT_1089at 1101.249 kb on - strand, within EX28DRAFT_1089at 1101.276 kb on + strand, within EX28DRAFT_1089at 1101.276 kb on + strand, within EX28DRAFT_1089at 1101.545 kb on + strand, within EX28DRAFT_1089at 1101.687 kb on + strand, within EX28DRAFT_1089

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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1,099,459 + EX28DRAFT_1085 0.72 +0.2
1,099,495 + EX28DRAFT_1085 0.76 -1.7
1,099,495 + EX28DRAFT_1085 0.76 +1.6
1,099,495 + EX28DRAFT_1085 0.76 -0.2
1,099,496 - EX28DRAFT_1085 0.76 +1.8
1,099,496 - EX28DRAFT_1085 0.76 -0.2
1,099,496 - EX28DRAFT_1085 0.76 +0.1
1,099,496 - EX28DRAFT_1085 0.76 +2.2
1,099,646 - -0.3
1,099,646 - -2.2
1,099,646 - -0.3
1,099,702 + -0.7
1,099,702 + +0.8
1,099,702 + -0.1
1,099,702 + -0.1
1,099,703 - +0.3
1,099,906 + EX28DRAFT_1086 0.32 -0.6
1,099,907 - EX28DRAFT_1086 0.32 +0.5
1,099,952 - EX28DRAFT_1086 0.39 -1.4
1,099,999 + EX28DRAFT_1086 0.46 +3.4
1,099,999 + EX28DRAFT_1086 0.46 +0.1
1,099,999 + EX28DRAFT_1086 0.46 -0.4
1,099,999 + EX28DRAFT_1086 0.46 +0.2
1,100,000 - EX28DRAFT_1086 0.46 -1.1
1,100,000 - EX28DRAFT_1086 0.46 -0.2
1,100,021 + EX28DRAFT_1086 0.49 +0.2
1,100,021 + EX28DRAFT_1086 0.49 -0.4
1,100,021 + EX28DRAFT_1086 0.49 +1.9
1,100,108 + EX28DRAFT_1086 0.63 +0.5
1,100,121 - EX28DRAFT_1086 0.65 +0.7
1,100,203 + EX28DRAFT_1086 0.77 -0.1
1,100,203 + EX28DRAFT_1086 0.77 -1.2
1,100,204 - EX28DRAFT_1086 0.77 +0.4
1,100,204 - EX28DRAFT_1086 0.77 +0.3
1,100,204 - EX28DRAFT_1086 0.77 -0.4
1,100,207 + EX28DRAFT_1086 0.78 -0.2
1,100,207 + EX28DRAFT_1086 0.78 +1.8
1,100,207 + EX28DRAFT_1086 0.78 +0.1
1,100,207 + EX28DRAFT_1086 0.78 +0.4
1,100,207 + EX28DRAFT_1086 0.78 +0.2
1,100,207 + EX28DRAFT_1086 0.78 -1.8
1,100,207 + EX28DRAFT_1086 0.78 +0.4
1,100,208 - EX28DRAFT_1086 0.78 -0.0
1,100,208 - EX28DRAFT_1086 0.78 -0.2
1,100,208 - EX28DRAFT_1086 0.78 -0.4
1,100,208 - EX28DRAFT_1086 0.78 +0.1
1,100,208 - EX28DRAFT_1086 0.78 -0.9
1,100,208 - EX28DRAFT_1086 0.78 -0.1
1,100,208 - EX28DRAFT_1086 0.78 +0.4
1,100,208 - EX28DRAFT_1086 0.78 +0.4
1,100,208 - EX28DRAFT_1086 0.78 +0.5
1,100,208 - EX28DRAFT_1086 0.78 +0.6
1,100,208 - EX28DRAFT_1086 0.78 +0.7
1,100,208 - EX28DRAFT_1086 0.78 +0.4
1,100,210 - EX28DRAFT_1086 0.78 -0.3
1,100,352 - -0.6
1,100,406 + -1.1
1,100,406 + -3.8
1,100,410 + -0.7
1,100,447 - EX28DRAFT_1087 0.13 -0.0
1,100,471 + EX28DRAFT_1087 0.20 -2.2
1,100,471 + EX28DRAFT_1087 0.20 -1.8
1,100,471 + EX28DRAFT_1087 0.20 +0.2
1,100,472 - EX28DRAFT_1087 0.21 +0.1
1,100,475 + EX28DRAFT_1087 0.22 -2.0
1,100,579 - EX28DRAFT_1087 0.54 +0.1
1,100,592 + EX28DRAFT_1087 0.58 -0.8
1,100,592 + EX28DRAFT_1087 0.58 -1.1
1,100,641 - EX28DRAFT_1087 0.73 -0.1
1,100,875 - EX28DRAFT_1088 0.78 -0.8
1,100,990 + +0.8
1,101,006 + -0.8
1,101,119 + EX28DRAFT_1089 0.12 +0.7
1,101,249 - EX28DRAFT_1089 0.28 -0.0
1,101,276 + EX28DRAFT_1089 0.31 +0.0
1,101,276 + EX28DRAFT_1089 0.31 +3.4
1,101,545 + EX28DRAFT_1089 0.64 -0.3
1,101,687 + EX28DRAFT_1089 0.82 -0.4

Or see this region's nucleotide sequence