Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0972

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0970 and EX28DRAFT_0971 are separated by 1 nucleotidesEX28DRAFT_0971 and EX28DRAFT_0972 overlap by 1 nucleotidesEX28DRAFT_0972 and EX28DRAFT_0973 overlap by 14 nucleotidesEX28DRAFT_0973 and EX28DRAFT_0974 overlap by 4 nucleotides EX28DRAFT_0970: EX28DRAFT_0970 - ABC-type antimicrobial peptide transport system, ATPase component, at 972,097 to 972,903 _0970 EX28DRAFT_0971: EX28DRAFT_0971 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain, at 972,905 to 973,897 _0971 EX28DRAFT_0972: EX28DRAFT_0972 - ABC-type antimicrobial peptide transport system, permease component, at 973,897 to 974,787 _0972 EX28DRAFT_0973: EX28DRAFT_0973 - ABC-type antimicrobial peptide transport system, permease component, at 974,774 to 975,739 _0973 EX28DRAFT_0974: EX28DRAFT_0974 - ABC-type oligopeptide transport system, periplasmic component, at 975,736 to 977,376 _0974 Position (kb) 973 974 975Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 974.380 kb on - strand, within EX28DRAFT_0972at 974.690 kb on - strand, within EX28DRAFT_0972at 974.690 kb on - strand, within EX28DRAFT_0972at 974.718 kb on - strandat 974.771 kb on - strandat 974.781 kb on - strandat 974.798 kb on - strandat 974.845 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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974,380 - EX28DRAFT_0972 0.54 -1.9
974,690 - EX28DRAFT_0972 0.89 -3.9
974,690 - EX28DRAFT_0972 0.89 -2.7
974,718 - +0.2
974,771 - +1.6
974,781 - +1.6
974,798 - +0.0
974,845 + -2.2

Or see this region's nucleotide sequence